These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2444#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence [TTCATGATAGATAAGATCGTTCAGGGATGACGAAAGTTTACGATCCGCATTTCCACGTGATTTCGTCTGAACAAACGCCTTCGTAGTTCATATACGGTCTTCCCATCGATGCTTGAACGTTTCCTTGTTGAAAGATTAATTTGTAATAAGGAAGCGGTAGATGAAAAAAAAAAAACACGATGAGATTTCTAATTGTGAATCTTTTTAAAGAAAAATGGTTTGTTTCATTCGTGGTAGGTTTTACGCTTCGAACTATTGCGTGTTAATATGTGTAATGATTGAGAGAGAGAGAGAAAGAGAGAGAAAGTAACAATGAGAGAAAGAGAGAGAAAATGAGAATGAGAGGGAGAGAGAGAGAGAGAGAGAAAGAGTGTGTTGAAAATAAAAAGAAAAAAAATAACGCTTACCTACCTACGATAATTTATTATCGACCGTTTTATTTGTATCGACGATATATGACGAAAAGTATCGATCGTAGACGAATTTAGCGTAGATAGGTTTCGTACTTCGTATTTATTGAACATTACTAAATCCATTATATATCAAATATCTCATGTATTGGAGCCGAAGAGGACAATTGAAAATAAATAATTGTAACCAAAAAAAA] [+] EMBL BI508363 [TTCATGATAGATAAGATCGTTCAGGGATGACGAAAGTTTACGATCCGCATTTCCACGTGATTTCGTCTGAACAAACGCCTTCGTAGTTCATATACGGTCTTCCCATCGATGCTTGAACGTTTCCTTGTTGAAAGATTAATTTGTAATAAGGAAGCGGTAGATGAAAAAAAAAAAACACGATGAGATTTCTAATTGTGAATCTTTTTAAAGAAAAATGGTTTGTTTCATTCGTGGTAGGTTTTACGCTTCGAACTATTGCGTGTTAATATGTGTAATGATTGAGAGAGAGAGAGAAAGAGAGAGAAAGTAACAATGAGAGAAAGAGAGAGAAAATGAGAATGAGAGGGAGAGAGAGAGAGAGAGAGAAAGAGTGTGTTGAAAATAAAAAGAAAAAAAATAACGCTTACCTACCTACGATAATTTATTATCGACCGTTTTATTTGTATCGACGATATATGACGAAAAGTATCGATCGTAGACGAATTTAGCGTAGATAGGTTTCGTACTTCGTATTTATTGAACATTACTAAATCCATTATATATCAAATATCTCATGTATTGGAGCCGAAGAGGACAATTGAAAATAAATAATTGTAACCAAAAAAAA] consensusID : consensus_2444#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 554 fasta sequence [CGCATTTCCACGTGATTTCGTCTGAACAAACGCCTTCGTAGTTCATATACGGTCTTCCCATCGATGCTTGAACGTTTCCTTGTTGAAAGATTAATTTGTAATAAGGAAGCGATAGATAAAAAAAAAAAACACGATGAGATTTCTAATTGTGAATCTTTTTAAAGAAAAATGGTTTGTTTCATTCGTGGTAGGTTTTACGCTTCGAACTATTGCGTGTTAATATGTGTAATGATTGAGAAAGAGAGAGAAAGTAACAATGAGAGAAAGAGAGAGAAAATGAGAATGAGAGGGAGAGAGAGAGAGAGAGAGAAAGAGTGTATTGAAAATAAAAAGAAAAAAAATAACGCTTACCTACCTACGATAATTTATTATCGACCGTTTTATTTGTATCGACGATATATGACGAAAAGTATCGATCGTAGACGAATTTAGCGTAGATAGGTTTCGTACTTCGTATTTATTGAACATTACTAAATCCATTATATATCAAATATCTCATGTATTGGAGCCGAAGAGGACAATTGAAAATAAATAATTGTAACCAAAAAAAAAAA] [+] EMBL BI503290 [CGCATTTCCACGTGATTTCGTCTGAACAAACGCCTTCGTAGTTCATATACGGTCTTCCCATCGATGCTTGAACGTTTCCTTGTTGAAAGATTAATTTGTAATAAGGAAGCGATAGATAAAAAAAAAAAACACGATGAGATTTCTAATTGTGAATCTTTTTAAAGAAAAATGGTTTGTTTCATTCGTGGTAGGTTTTACGCTTCGAACTATTGCGTGTTAATATGTGTAATGATTGAGAAAGAGAGAGAAAGTAACAATGAGAGAAAGAGAGAGAAAATGAGAATGAGAGGGAGAGAGAGAGAGAGAGAGAAAGAGTGTATTGAAAATAAAAAGAAAAAAAATAACGCTTACCTACCTACGATAATTTATTATCGACCGTTTTATTTGTATCGACGATATATGACGAAAAGTATCGATCGTAGACGAATTTAGCGTAGATAGGTTTCGTACTTCGTATTTATTGAACATTACTAAATCCATTATATATCAAATATCTCATGTATTGGAGCCGAAGAGGACAATTGAAAATAAATAATTGTAACCAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2444#0 TTCATGATAGATAAGATCGTTCAGGGATGACGAAAGTTTACGATCCGCATTTCCACGTGA 60 consensus_2444#1 ---------------------------------------------CGCATTTCCACGTGA 15 *************** consensus_2444#0 TTTCGTCTGAACAAACGCCTTCGTAGTTCATATACGGTCTTCCCATCGATGCTTGAACGT 120 consensus_2444#1 TTTCGTCTGAACAAACGCCTTCGTAGTTCATATACGGTCTTCCCATCGATGCTTGAACGT 75 ************************************************************ consensus_2444#0 TTCCTTGTTGAAAGATTAATTTGTAATAAGGAAGCGGTAGATGAAAAAAAAAAAACACGA 180 consensus_2444#1 TTCCTTGTTGAAAGATTAATTTGTAATAAGGAAGCGATAGAT-AAAAAAAAAAAACACGA 134 ************************************ ***** ***************** consensus_2444#0 TGAGATTTCTAATTGTGAATCTTTTTAAAGAAAAATGGTTTGTTTCATTCGTGGTAGGTT 240 consensus_2444#1 TGAGATTTCTAATTGTGAATCTTTTTAAAGAAAAATGGTTTGTTTCATTCGTGGTAGGTT 194 ************************************************************ consensus_2444#0 TTACGCTTCGAACTATTGCGTGTTAATATGTGTAATGATTGAGAGAGAGAGAGAAAGAGA 300 consensus_2444#1 TTACGCTTCGAACTATTGCGTGTTAATATGTGTAATGATTGAGA----------AAGAGA 244 ******************************************** ****** consensus_2444#0 GAGAAAGTAACAATGAGAGAAAGAGAGAGAAAATGAGAATGAGAGGGAGAGAGAGAGAGA 360 consensus_2444#1 GAGAAAGTAACAATGAGAGAAAGAGAGAGAAAATGAGAATGAGAGGGAGAGAGAGAGAGA 304 ************************************************************ consensus_2444#0 GAGAGAAAGAGTGTGTTGAAAATAAAAAGAAAAAAAATAACGCTTACCTACCTACGATAA 420 consensus_2444#1 GAGAGAAAGAGTGTATTGAAAATAAAAAGAAAAAAAATAACGCTTACCTACCTACGATAA 364 ************** ********************************************* consensus_2444#0 TTTATTATCGACCGTTTTATTTGTATCGACGATATATGACGAAAAGTATCGATCGTAGAC 480 consensus_2444#1 TTTATTATCGACCGTTTTATTTGTATCGACGATATATGACGAAAAGTATCGATCGTAGAC 424 ************************************************************ consensus_2444#0 GAATTTAGCGTAGATAGGTTTCGTACTTCGTATTTATTGAACATTACTAAATCCATTATA 540 consensus_2444#1 GAATTTAGCGTAGATAGGTTTCGTACTTCGTATTTATTGAACATTACTAAATCCATTATA 484 ************************************************************ consensus_2444#0 TATCAAATATCTCATGTATTGGAGCCGAAGAGGACAATTGAAAATAAATAATTGTAACCA 600 consensus_2444#1 TATCAAATATCTCATGTATTGGAGCCGAAGAGGACAATTGAAAATAAATAATTGTAACCA 544 ************************************************************ consensus_2444#0 AAAAAAA--- 607 consensus_2444#1 AAAAAAAAAA 554 ******* |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |