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Apis mellifera
cluster # 2444 cluster # 2444       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2444#0 length = 607 sequences # 1  
consensus_2444#1 length = 554 sequences # 1  

consensusID : consensus_2444#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 607
fasta sequence
                              [TTCATGATAGATAAGATCGTTCAGGGATGACGAAAGTTTACGATCCGCATTTCCACGTGATTTCGTCTGAACAAACGCCTTCGTAGTTCATATACGGTCTTCCCATCGATGCTTGAACGTTTCCTTGTTGAAAGATTAATTTGTAATAAGGAAGCGGTAGATGAAAAAAAAAAAACACGATGAGATTTCTAATTGTGAATCTTTTTAAAGAAAAATGGTTTGTTTCATTCGTGGTAGGTTTTACGCTTCGAACTATTGCGTGTTAATATGTGTAATGATTGAGAGAGAGAGAGAAAGAGAGAGAAAGTAACAATGAGAGAAAGAGAGAGAAAATGAGAATGAGAGGGAGAGAGAGAGAGAGAGAGAAAGAGTGTGTTGAAAATAAAAAGAAAAAAAATAACGCTTACCTACCTACGATAATTTATTATCGACCGTTTTATTTGTATCGACGATATATGACGAAAAGTATCGATCGTAGACGAATTTAGCGTAGATAGGTTTCGTACTTCGTATTTATTGAACATTACTAAATCCATTATATATCAAATATCTCATGTATTGGAGCCGAAGAGGACAATTGAAAATAAATAATTGTAACCAAAAAAAA]

[+] EMBL BI508363             [TTCATGATAGATAAGATCGTTCAGGGATGACGAAAGTTTACGATCCGCATTTCCACGTGATTTCGTCTGAACAAACGCCTTCGTAGTTCATATACGGTCTTCCCATCGATGCTTGAACGTTTCCTTGTTGAAAGATTAATTTGTAATAAGGAAGCGGTAGATGAAAAAAAAAAAACACGATGAGATTTCTAATTGTGAATCTTTTTAAAGAAAAATGGTTTGTTTCATTCGTGGTAGGTTTTACGCTTCGAACTATTGCGTGTTAATATGTGTAATGATTGAGAGAGAGAGAGAAAGAGAGAGAAAGTAACAATGAGAGAAAGAGAGAGAAAATGAGAATGAGAGGGAGAGAGAGAGAGAGAGAGAAAGAGTGTGTTGAAAATAAAAAGAAAAAAAATAACGCTTACCTACCTACGATAATTTATTATCGACCGTTTTATTTGTATCGACGATATATGACGAAAAGTATCGATCGTAGACGAATTTAGCGTAGATAGGTTTCGTACTTCGTATTTATTGAACATTACTAAATCCATTATATATCAAATATCTCATGTATTGGAGCCGAAGAGGACAATTGAAAATAAATAATTGTAACCAAAAAAAA]


>consensus_2444#0 TTCATGATAGATAAGATCGTTCAGGGATGACGAAAGTTTACGATCCGCATTTCCACGTGA TTTCGTCTGAACAAACGCCTTCGTAGTTCATATACGGTCTTCCCATCGATGCTTGAACGT TTCCTTGTTGAAAGATTAATTTGTAATAAGGAAGCGGTAGATGAAAAAAAAAAAACACGA TGAGATTTCTAATTGTGAATCTTTTTAAAGAAAAATGGTTTGTTTCATTCGTGGTAGGTT TTACGCTTCGAACTATTGCGTGTTAATATGTGTAATGATTGAGAGAGAGAGAGAAAGAGA GAGAAAGTAACAATGAGAGAAAGAGAGAGAAAATGAGAATGAGAGGGAGAGAGAGAGAGA GAGAGAAAGAGTGTGTTGAAAATAAAAAGAAAAAAAATAACGCTTACCTACCTACGATAA TTTATTATCGACCGTTTTATTTGTATCGACGATATATGACGAAAAGTATCGATCGTAGAC GAATTTAGCGTAGATAGGTTTCGTACTTCGTATTTATTGAACATTACTAAATCCATTATA TATCAAATATCTCATGTATTGGAGCCGAAGAGGACAATTGAAAATAAATAATTGTAACCA AAAAAAA



consensusID : consensus_2444#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 554
fasta sequence
                              [CGCATTTCCACGTGATTTCGTCTGAACAAACGCCTTCGTAGTTCATATACGGTCTTCCCATCGATGCTTGAACGTTTCCTTGTTGAAAGATTAATTTGTAATAAGGAAGCGATAGATAAAAAAAAAAAACACGATGAGATTTCTAATTGTGAATCTTTTTAAAGAAAAATGGTTTGTTTCATTCGTGGTAGGTTTTACGCTTCGAACTATTGCGTGTTAATATGTGTAATGATTGAGAAAGAGAGAGAAAGTAACAATGAGAGAAAGAGAGAGAAAATGAGAATGAGAGGGAGAGAGAGAGAGAGAGAGAAAGAGTGTATTGAAAATAAAAAGAAAAAAAATAACGCTTACCTACCTACGATAATTTATTATCGACCGTTTTATTTGTATCGACGATATATGACGAAAAGTATCGATCGTAGACGAATTTAGCGTAGATAGGTTTCGTACTTCGTATTTATTGAACATTACTAAATCCATTATATATCAAATATCTCATGTATTGGAGCCGAAGAGGACAATTGAAAATAAATAATTGTAACCAAAAAAAAAAA]

[+] EMBL BI503290             [CGCATTTCCACGTGATTTCGTCTGAACAAACGCCTTCGTAGTTCATATACGGTCTTCCCATCGATGCTTGAACGTTTCCTTGTTGAAAGATTAATTTGTAATAAGGAAGCGATAGATAAAAAAAAAAAACACGATGAGATTTCTAATTGTGAATCTTTTTAAAGAAAAATGGTTTGTTTCATTCGTGGTAGGTTTTACGCTTCGAACTATTGCGTGTTAATATGTGTAATGATTGAGAAAGAGAGAGAAAGTAACAATGAGAGAAAGAGAGAGAAAATGAGAATGAGAGGGAGAGAGAGAGAGAGAGAGAAAGAGTGTATTGAAAATAAAAAGAAAAAAAATAACGCTTACCTACCTACGATAATTTATTATCGACCGTTTTATTTGTATCGACGATATATGACGAAAAGTATCGATCGTAGACGAATTTAGCGTAGATAGGTTTCGTACTTCGTATTTATTGAACATTACTAAATCCATTATATATCAAATATCTCATGTATTGGAGCCGAAGAGGACAATTGAAAATAAATAATTGTAACCAAAAAAAAAAA]


>consensus_2444#1 CGCATTTCCACGTGATTTCGTCTGAACAAACGCCTTCGTAGTTCATATACGGTCTTCCCA TCGATGCTTGAACGTTTCCTTGTTGAAAGATTAATTTGTAATAAGGAAGCGATAGATAAA AAAAAAAAACACGATGAGATTTCTAATTGTGAATCTTTTTAAAGAAAAATGGTTTGTTTC ATTCGTGGTAGGTTTTACGCTTCGAACTATTGCGTGTTAATATGTGTAATGATTGAGAAA GAGAGAGAAAGTAACAATGAGAGAAAGAGAGAGAAAATGAGAATGAGAGGGAGAGAGAGA GAGAGAGAGAAAGAGTGTATTGAAAATAAAAAGAAAAAAAATAACGCTTACCTACCTACG ATAATTTATTATCGACCGTTTTATTTGTATCGACGATATATGACGAAAAGTATCGATCGT AGACGAATTTAGCGTAGATAGGTTTCGTACTTCGTATTTATTGAACATTACTAAATCCAT TATATATCAAATATCTCATGTATTGGAGCCGAAGAGGACAATTGAAAATAAATAATTGTA ACCAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2444#0      TTCATGATAGATAAGATCGTTCAGGGATGACGAAAGTTTACGATCCGCATTTCCACGTGA 60
consensus_2444#1      ---------------------------------------------CGCATTTCCACGTGA 15
                                                                   ***************

consensus_2444#0      TTTCGTCTGAACAAACGCCTTCGTAGTTCATATACGGTCTTCCCATCGATGCTTGAACGT 120
consensus_2444#1      TTTCGTCTGAACAAACGCCTTCGTAGTTCATATACGGTCTTCCCATCGATGCTTGAACGT 75
                      ************************************************************

consensus_2444#0      TTCCTTGTTGAAAGATTAATTTGTAATAAGGAAGCGGTAGATGAAAAAAAAAAAACACGA 180
consensus_2444#1      TTCCTTGTTGAAAGATTAATTTGTAATAAGGAAGCGATAGAT-AAAAAAAAAAAACACGA 134
                      ************************************ ***** *****************

consensus_2444#0      TGAGATTTCTAATTGTGAATCTTTTTAAAGAAAAATGGTTTGTTTCATTCGTGGTAGGTT 240
consensus_2444#1      TGAGATTTCTAATTGTGAATCTTTTTAAAGAAAAATGGTTTGTTTCATTCGTGGTAGGTT 194
                      ************************************************************

consensus_2444#0      TTACGCTTCGAACTATTGCGTGTTAATATGTGTAATGATTGAGAGAGAGAGAGAAAGAGA 300
consensus_2444#1      TTACGCTTCGAACTATTGCGTGTTAATATGTGTAATGATTGAGA----------AAGAGA 244
                      ********************************************          ******

consensus_2444#0      GAGAAAGTAACAATGAGAGAAAGAGAGAGAAAATGAGAATGAGAGGGAGAGAGAGAGAGA 360
consensus_2444#1      GAGAAAGTAACAATGAGAGAAAGAGAGAGAAAATGAGAATGAGAGGGAGAGAGAGAGAGA 304
                      ************************************************************

consensus_2444#0      GAGAGAAAGAGTGTGTTGAAAATAAAAAGAAAAAAAATAACGCTTACCTACCTACGATAA 420
consensus_2444#1      GAGAGAAAGAGTGTATTGAAAATAAAAAGAAAAAAAATAACGCTTACCTACCTACGATAA 364
                      ************** *********************************************

consensus_2444#0      TTTATTATCGACCGTTTTATTTGTATCGACGATATATGACGAAAAGTATCGATCGTAGAC 480
consensus_2444#1      TTTATTATCGACCGTTTTATTTGTATCGACGATATATGACGAAAAGTATCGATCGTAGAC 424
                      ************************************************************

consensus_2444#0      GAATTTAGCGTAGATAGGTTTCGTACTTCGTATTTATTGAACATTACTAAATCCATTATA 540
consensus_2444#1      GAATTTAGCGTAGATAGGTTTCGTACTTCGTATTTATTGAACATTACTAAATCCATTATA 484
                      ************************************************************

consensus_2444#0      TATCAAATATCTCATGTATTGGAGCCGAAGAGGACAATTGAAAATAAATAATTGTAACCA 600
consensus_2444#1      TATCAAATATCTCATGTATTGGAGCCGAAGAGGACAATTGAAAATAAATAATTGTAACCA 544
                      ************************************************************

consensus_2444#0      AAAAAAA--- 607
consensus_2444#1      AAAAAAAAAA 554
                      *******   




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)