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Apis mellifera
cluster # 2458 cluster # 2458       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2458#0 length = 550 sequences # 1  
consensus_2458#1 length = 548 sequences # 1  

consensusID : consensus_2458#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 550
fasta sequence
                              [GCACGCGAGAATCGCGGCTCTGAACGAGGCGCTCGTCGAGGGACTTTTGAGAAGGGACGATTTGCACATGGAACAAGATTCGATGCTCGTCGACGTCGAAGATCTCACCAGATATCTAGGTGCCAAGCAGGAGTCGTTGAAGAAGAAGCAGAACGCGAGGGAGCAGCAGTGCACGGGGAGCAGCAGAAGTCATCATCAGCAGGGCGGCAACCCGGGCCAGAACAAATCGTCGTCGATCAAGCCGAAGCTGACGCACCGTGGCCTGGTCTCGTTGGTGAGGAAATAATGCCTCGCCACGAGACTGCGCGGTCTCGTCGGAAATTAAGCGGGGAAGGCTTACCTTCCCGAGAGAGGACGCGAGCAAGTATACGCAATTAACATCTGCTCGATTCGATCTGCCGATCTCTCGCCCCTCCCTCCCCGATCGAACAATTTCTCGAACTCGACTCCCGGTTCCGGTATGCTGGAACGATCGCCCTTCCCTGCCCTCCCTCCTCCTCCTCCCTCTCGAGAGGAAGGGAACGAGAAACGAGAGATTTATTCGGACGAA]

[+] EMBL BI503262             [GCACGCGAGAATCGCGGCTCTGAACGAGGCGCTCGTCGAGGGACTTTTGAGAAGGGACGATTTGCACATGGAACAAGATTCGATGCTCGTCGACGTCGAAGATCTCACCAGATATCTAGGTGCCAAGCAGGAGTCGTTGAAGAAGAAGCAGAACGCGAGGGAGCAGCAGTGCACGGGGAGCAGCAGAAGTCATCATCAGCAGGGCGGCAACCCGGGCCAGAACAAATCGTCGTCGATCAAGCCGAAGCTGACGCACCGTGGCCTGGTCTCGTTGGTGAGGAAATAATGCCTCGCCACGAGACTGCGCGGTCTCGTCGGAAATTAAGCGGGGAAGGCTTACCTTCCCGAGAGAGGACGCGAGCAAGTATACGCAATTAACATCTGCTCGATTCGATCTGCCGATCTCTCGCCCCTCCCTCCCCGATCGAACAATTTCTCGAACTCGACTCCCGGTTCCGGTATGCTGGAACGATCGCCCTTCCCTGCCCTCCCTCCTCCTCCTCCCTCTCGAGAGGAAGGGAACGAGAAACGAGAGATTTATTCGGACGAA]


>consensus_2458#0 GCACGCGAGAATCGCGGCTCTGAACGAGGCGCTCGTCGAGGGACTTTTGAGAAGGGACGA TTTGCACATGGAACAAGATTCGATGCTCGTCGACGTCGAAGATCTCACCAGATATCTAGG TGCCAAGCAGGAGTCGTTGAAGAAGAAGCAGAACGCGAGGGAGCAGCAGTGCACGGGGAG CAGCAGAAGTCATCATCAGCAGGGCGGCAACCCGGGCCAGAACAAATCGTCGTCGATCAA GCCGAAGCTGACGCACCGTGGCCTGGTCTCGTTGGTGAGGAAATAATGCCTCGCCACGAG ACTGCGCGGTCTCGTCGGAAATTAAGCGGGGAAGGCTTACCTTCCCGAGAGAGGACGCGA GCAAGTATACGCAATTAACATCTGCTCGATTCGATCTGCCGATCTCTCGCCCCTCCCTCC CCGATCGAACAATTTCTCGAACTCGACTCCCGGTTCCGGTATGCTGGAACGATCGCCCTT CCCTGCCCTCCCTCCTCCTCCTCCCTCTCGAGAGGAAGGGAACGAGAAACGAGAGATTTA TTCGGACGAA



consensusID : consensus_2458#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 548
fasta sequence
                              [ACACCGGCTCGAATTCGGCCCCGATCGACGAGGCCGATTTCTTCGCAAGGCAGGCGAGATTGCAAACCGAGGCACGAATGGCCTTGGCTCAGGCCAAAGAAATGGCCCACATGCAGATGGAAGTGGAGAGGCAAAGGCTGAAACAGAGCCCCATCACCGAGATGGTGCGATCCAGCCTCGAAAAAGTTGGCGTTCAACTCGGCGAGGATAGGCGCAGATTGTCACGAGTACTTTTAACGGAGCTAAACGTCGCCCAGCTTCAAGTGGTGGCGAACGACTTGCACGCGAGAATCGCGGCTCTGAACGAGGCGCTCGTCGAGGGACTTTTGAGAAGGGACGATTTGCACATGGAACAAGATTCGATGCTCGTCGACGTCGAAGATCTCACCAGATATCTCTTCTGCTGCGTTCACATGCACAGAGGTGCCAAGCAGGAGTCGTTGAAGAAGAAGCAGAACGCGAGGGAGCAGCAGTGCACGGGGAGCAGCAGAAGTCATCATCAGCAGGGCGGCAACCCGGGCCAGAACAAATCGTCGTCGATCAAGCCG]

[+] EMBL BI506001             [ACACCGGCTCGAATTCGGCCCCGATCGACGAGGCCGATTTCTTCGCAAGGCAGGCGAGATTGCAAACCGAGGCACGAATGGCCTTGGCTCAGGCCAAAGAAATGGCCCACATGCAGATGGAAGTGGAGAGGCAAAGGCTGAAACAGAGCCCCATCACCGAGATGGTGCGATCCAGCCTCGAAAAAGTTGGCGTTCAACTCGGCGAGGATAGGCGCAGATTGTCACGAGTACTTTTAACGGAGCTAAACGTCGCCCAGCTTCAAGTGGTGGCGAACGACTTGCACGCGAGAATCGCGGCTCTGAACGAGGCGCTCGTCGAGGGACTTTTGAGAAGGGACGATTTGCACATGGAACAAGATTCGATGCTCGTCGACGTCGAAGATCTCACCAGATATCTCTTCTGCTGCGTTCACATGCACAGAGGTGCCAAGCAGGAGTCGTTGAAGAAGAAGCAGAACGCGAGGGAGCAGCAGTGCACGGGGAGCAGCAGAAGTCATCATCAGCAGGGCGGCAACCCGGGCCAGAACAAATCGTCGTCGATCAAGCCG]


>consensus_2458#1 ACACCGGCTCGAATTCGGCCCCGATCGACGAGGCCGATTTCTTCGCAAGGCAGGCGAGAT TGCAAACCGAGGCACGAATGGCCTTGGCTCAGGCCAAAGAAATGGCCCACATGCAGATGG AAGTGGAGAGGCAAAGGCTGAAACAGAGCCCCATCACCGAGATGGTGCGATCCAGCCTCG AAAAAGTTGGCGTTCAACTCGGCGAGGATAGGCGCAGATTGTCACGAGTACTTTTAACGG AGCTAAACGTCGCCCAGCTTCAAGTGGTGGCGAACGACTTGCACGCGAGAATCGCGGCTC TGAACGAGGCGCTCGTCGAGGGACTTTTGAGAAGGGACGATTTGCACATGGAACAAGATT CGATGCTCGTCGACGTCGAAGATCTCACCAGATATCTCTTCTGCTGCGTTCACATGCACA GAGGTGCCAAGCAGGAGTCGTTGAAGAAGAAGCAGAACGCGAGGGAGCAGCAGTGCACGG GGAGCAGCAGAAGTCATCATCAGCAGGGCGGCAACCCGGGCCAGAACAAATCGTCGTCGA TCAAGCCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2458#0      --GCACGCGAGAATCGCGGCTCTGAACGAGGCGCTCGTCGAGGGACTTTTGAGAAGGGAC 58
consensus_2458#1      ACACCGGCTCGAATT-CGGCCCCGATCGACGAG---GCCGATTTCTTCGCAAGGCAGGCG 56
                         *  **  ****  **** * ** *** * *   * ***     *    **   **  

consensus_2458#0      GATTTGCACATGGAACAAGATTCGATGCTCGTCGACGTCGAAGATCTCACCAGATATCTA 118
consensus_2458#1      AGATTGCAAACCGAGGCACGAATGGCCTTGGCTCAGGCCAAAGAAATGGCCC-ACATGCA 115
                         ***** *  **   *     *    * *   * * * ****  *  **  * **  *

consensus_2458#0      GGTGCCAAGCAGGAGTCGTTGAAGAAGAAGCAGAACGCGAGGGAGCAG-CAGTGC-ACGG 176
consensus_2458#1      GATG--GAAGTGGAGAGGCAAAGGCTGAAACAGAGCCCCATCACCGAGATGGTGCGATCC 173
                      * **   *   ****  *   * *  *** **** * * *      **   **** *   

consensus_2458#0      GGAGCAGCAGAAGTCATCATCAGCAGGGCGGCAACCCGGGCCAGAACAAATCGTCGTCGA 236
consensus_2458#1      AGCCTCGAAAAAGTTGGCGTT--CAACTCGGCGA---GGATAGGCGCAGATTGTCA-CGA 227
                       *    * * ****   * *   **   **** *   **    *  ** ** ***  ***

consensus_2458#0      TCAAGCCGAAGCTGACGCACCGTGGCCTGGTCTCGTTGGTGAGGAAATAATGCCTCGC-C 295
consensus_2458#1      GTACTTTTAACGGAGCTAAACGTCGCCCAGCTTCA--AGTGGTGGCG-AACGACTTGCAC 284
                        *     **     *  * *** ***  *  **    ***  *    ** * ** ** *

consensus_2458#0      ACGAGACTGCGCGGTCTCGTCGGAAATTAAGCGGGGAAGGCTTACCTTCCCGAGAGAGGA 355
consensus_2458#1      GCGAGAAT-CGCGGCTCTGAACGAGGC-GCTCGTCGAGGGACT--TTTGAGAAGGGACGA 340
                       ***** * *****    *   **       **  ** **  *   **    ** ** **

consensus_2458#0      CGCGAGCAAGTATACGCAATTAACATCTGCTCGATTCGA-----TCTGCCGATCTCTCGC 410
consensus_2458#1      TTTGCACATGGAACAAGATTCGATGCTCGTCGACGTCGAAGATCTCACCAGATATCTCTT 400
                         *  ** * *     * *  *     *      ****     **  * *** ****  

consensus_2458#0      CCCTCCCTCCCCGATCGAACAATTTCTCGAACTCGACTCCCGGTTCCGGTATGCTGGAAC 470
consensus_2458#1      CTGCTGCGTTCACATGCACAGAGGTGCCAAGCAGGAGTCGTTGAAGAAGAAGCAGAACGC 460
                      *     *   *  **  *   *  *  * * *  ** **   *     * *        *

consensus_2458#0      GATCGCCCTTCCCTGCCCTCCCTCCTCCTCC--TCCCTCTCGAGAGGAAGGGAACGAGAA 528
consensus_2458#1      GAGGGAGCAGCAGTGCACGGGGAGCAGCAGAAGTCATCATCAGCAGGGCGGCAACCCGGG 520
                      **  *  *  *  *** *      *  *     **    **   ***  ** ***  *  

consensus_2458#0      ACGAGAGATTTATTCG--GACGAA---- 550
consensus_2458#1      CCAGAACAAATCGTCGTCGATCAAGCCG 548
                       *   * *  *  ***  **  **    




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)