These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2458#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence [GCACGCGAGAATCGCGGCTCTGAACGAGGCGCTCGTCGAGGGACTTTTGAGAAGGGACGATTTGCACATGGAACAAGATTCGATGCTCGTCGACGTCGAAGATCTCACCAGATATCTAGGTGCCAAGCAGGAGTCGTTGAAGAAGAAGCAGAACGCGAGGGAGCAGCAGTGCACGGGGAGCAGCAGAAGTCATCATCAGCAGGGCGGCAACCCGGGCCAGAACAAATCGTCGTCGATCAAGCCGAAGCTGACGCACCGTGGCCTGGTCTCGTTGGTGAGGAAATAATGCCTCGCCACGAGACTGCGCGGTCTCGTCGGAAATTAAGCGGGGAAGGCTTACCTTCCCGAGAGAGGACGCGAGCAAGTATACGCAATTAACATCTGCTCGATTCGATCTGCCGATCTCTCGCCCCTCCCTCCCCGATCGAACAATTTCTCGAACTCGACTCCCGGTTCCGGTATGCTGGAACGATCGCCCTTCCCTGCCCTCCCTCCTCCTCCTCCCTCTCGAGAGGAAGGGAACGAGAAACGAGAGATTTATTCGGACGAA] [+] EMBL BI503262 [GCACGCGAGAATCGCGGCTCTGAACGAGGCGCTCGTCGAGGGACTTTTGAGAAGGGACGATTTGCACATGGAACAAGATTCGATGCTCGTCGACGTCGAAGATCTCACCAGATATCTAGGTGCCAAGCAGGAGTCGTTGAAGAAGAAGCAGAACGCGAGGGAGCAGCAGTGCACGGGGAGCAGCAGAAGTCATCATCAGCAGGGCGGCAACCCGGGCCAGAACAAATCGTCGTCGATCAAGCCGAAGCTGACGCACCGTGGCCTGGTCTCGTTGGTGAGGAAATAATGCCTCGCCACGAGACTGCGCGGTCTCGTCGGAAATTAAGCGGGGAAGGCTTACCTTCCCGAGAGAGGACGCGAGCAAGTATACGCAATTAACATCTGCTCGATTCGATCTGCCGATCTCTCGCCCCTCCCTCCCCGATCGAACAATTTCTCGAACTCGACTCCCGGTTCCGGTATGCTGGAACGATCGCCCTTCCCTGCCCTCCCTCCTCCTCCTCCCTCTCGAGAGGAAGGGAACGAGAAACGAGAGATTTATTCGGACGAA] consensusID : consensus_2458#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 548 fasta sequence [ACACCGGCTCGAATTCGGCCCCGATCGACGAGGCCGATTTCTTCGCAAGGCAGGCGAGATTGCAAACCGAGGCACGAATGGCCTTGGCTCAGGCCAAAGAAATGGCCCACATGCAGATGGAAGTGGAGAGGCAAAGGCTGAAACAGAGCCCCATCACCGAGATGGTGCGATCCAGCCTCGAAAAAGTTGGCGTTCAACTCGGCGAGGATAGGCGCAGATTGTCACGAGTACTTTTAACGGAGCTAAACGTCGCCCAGCTTCAAGTGGTGGCGAACGACTTGCACGCGAGAATCGCGGCTCTGAACGAGGCGCTCGTCGAGGGACTTTTGAGAAGGGACGATTTGCACATGGAACAAGATTCGATGCTCGTCGACGTCGAAGATCTCACCAGATATCTCTTCTGCTGCGTTCACATGCACAGAGGTGCCAAGCAGGAGTCGTTGAAGAAGAAGCAGAACGCGAGGGAGCAGCAGTGCACGGGGAGCAGCAGAAGTCATCATCAGCAGGGCGGCAACCCGGGCCAGAACAAATCGTCGTCGATCAAGCCG] [+] EMBL BI506001 [ACACCGGCTCGAATTCGGCCCCGATCGACGAGGCCGATTTCTTCGCAAGGCAGGCGAGATTGCAAACCGAGGCACGAATGGCCTTGGCTCAGGCCAAAGAAATGGCCCACATGCAGATGGAAGTGGAGAGGCAAAGGCTGAAACAGAGCCCCATCACCGAGATGGTGCGATCCAGCCTCGAAAAAGTTGGCGTTCAACTCGGCGAGGATAGGCGCAGATTGTCACGAGTACTTTTAACGGAGCTAAACGTCGCCCAGCTTCAAGTGGTGGCGAACGACTTGCACGCGAGAATCGCGGCTCTGAACGAGGCGCTCGTCGAGGGACTTTTGAGAAGGGACGATTTGCACATGGAACAAGATTCGATGCTCGTCGACGTCGAAGATCTCACCAGATATCTCTTCTGCTGCGTTCACATGCACAGAGGTGCCAAGCAGGAGTCGTTGAAGAAGAAGCAGAACGCGAGGGAGCAGCAGTGCACGGGGAGCAGCAGAAGTCATCATCAGCAGGGCGGCAACCCGGGCCAGAACAAATCGTCGTCGATCAAGCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2458#0 --GCACGCGAGAATCGCGGCTCTGAACGAGGCGCTCGTCGAGGGACTTTTGAGAAGGGAC 58 consensus_2458#1 ACACCGGCTCGAATT-CGGCCCCGATCGACGAG---GCCGATTTCTTCGCAAGGCAGGCG 56 * ** **** **** * ** *** * * * *** * ** ** consensus_2458#0 GATTTGCACATGGAACAAGATTCGATGCTCGTCGACGTCGAAGATCTCACCAGATATCTA 118 consensus_2458#1 AGATTGCAAACCGAGGCACGAATGGCCTTGGCTCAGGCCAAAGAAATGGCCC-ACATGCA 115 ***** * ** * * * * * * * **** * ** * ** * consensus_2458#0 GGTGCCAAGCAGGAGTCGTTGAAGAAGAAGCAGAACGCGAGGGAGCAG-CAGTGC-ACGG 176 consensus_2458#1 GATG--GAAGTGGAGAGGCAAAGGCTGAAACAGAGCCCCATCACCGAGATGGTGCGATCC 173 * ** * **** * * * *** **** * * * ** **** * consensus_2458#0 GGAGCAGCAGAAGTCATCATCAGCAGGGCGGCAACCCGGGCCAGAACAAATCGTCGTCGA 236 consensus_2458#1 AGCCTCGAAAAAGTTGGCGTT--CAACTCGGCGA---GGATAGGCGCAGATTGTCA-CGA 227 * * * **** * * ** **** * ** * ** ** *** *** consensus_2458#0 TCAAGCCGAAGCTGACGCACCGTGGCCTGGTCTCGTTGGTGAGGAAATAATGCCTCGC-C 295 consensus_2458#1 GTACTTTTAACGGAGCTAAACGTCGCCCAGCTTCA--AGTGGTGGCG-AACGACTTGCAC 284 * ** * * *** *** * ** *** * ** * ** ** * consensus_2458#0 ACGAGACTGCGCGGTCTCGTCGGAAATTAAGCGGGGAAGGCTTACCTTCCCGAGAGAGGA 355 consensus_2458#1 GCGAGAAT-CGCGGCTCTGAACGAGGC-GCTCGTCGAGGGACT--TTTGAGAAGGGACGA 340 ***** * ***** * ** ** ** ** * ** ** ** ** consensus_2458#0 CGCGAGCAAGTATACGCAATTAACATCTGCTCGATTCGA-----TCTGCCGATCTCTCGC 410 consensus_2458#1 TTTGCACATGGAACAAGATTCGATGCTCGTCGACGTCGAAGATCTCACCAGATATCTCTT 400 * ** * * * * * * **** ** * *** **** consensus_2458#0 CCCTCCCTCCCCGATCGAACAATTTCTCGAACTCGACTCCCGGTTCCGGTATGCTGGAAC 470 consensus_2458#1 CTGCTGCGTTCACATGCACAGAGGTGCCAAGCAGGAGTCGTTGAAGAAGAAGCAGAACGC 460 * * * ** * * * * * * ** ** * * * * consensus_2458#0 GATCGCCCTTCCCTGCCCTCCCTCCTCCTCC--TCCCTCTCGAGAGGAAGGGAACGAGAA 528 consensus_2458#1 GAGGGAGCAGCAGTGCACGGGGAGCAGCAGAAGTCATCATCAGCAGGGCGGCAACCCGGG 520 ** * * * *** * * * ** ** *** ** *** * consensus_2458#0 ACGAGAGATTTATTCG--GACGAA---- 550 consensus_2458#1 CCAGAACAAATCGTCGTCGATCAAGCCG 548 * * * * *** ** ** |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |