These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_249#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 514 fasta sequence [GCAACTAATCGAACGTATTTTCCTTGTTGAGCGTGTACCACGTTTCGTGTCGTAAGACTTAAAGAATGCGTTACGTGGCCGCTTATCTTTTAGCTGTTTTAGGAGGAAAAACTTCTCCTAATCAAAATGATATTGAAAAAATTTTATCATCTGTTGGAATTGAAACAGATGGTGAAAAACTTAAAAAAGTTATCGCAGAACTAAATGGAAAATCAATTGAAGAACTTATTTCGCAAGGAATGGAAAAATTATTATCTATGCCAGTTGGTGGTGGTGTTGCAGTTAGTGCAGATGCTGCACCAGTTGGAGGTACTACTGCTCCAGCTGAAGAAAAGAAAGAAGAAAAGAAACCAGCAAAAGAAGAATCTGAATCAGAAGATGATGATATGGGTTTCGGTCTTTTCGATTAAATAATTCATAATAATATCTNNATAATAACTATTTGTAAAATCTATATTATACAGTTTTGACAAGATTATTCGAAATAAATTATATTTTTAATTTNNNAAAAAAA] [+] EMBL BI515438 [GCAACTAATCGAACGTATTTTCCTTGTTGAGCGTGTACCACGTTTCGTGTCGTAAGACTTAAAGAATGCGTTACGTGGCCGCTTATCTTTTAGCTGTTTTAGGAGGAAAAACTTCTCCTAATCAAAATGATATTGAAAAAATTTTATCATCTGTTGGAATTGAAACAGATGGTGAAAAACTTAAAAAAGTTATCGCAGAACTAAATGGAAAATCAATTGAAGAACTTATTTCGCAAGGAATGGAAAAATTATTATCTATGCCAGTTGGTGGTGGTGTTGCAGTTAGTGCAGATGCTGCACCAGTTGGAGGTACTACTGCTCCAGCTGAAGAAAAGAAAGAAGAAAAGAAACCAGCAAAAGAAGAATCTGAATCAGAAGATGATGATATGGGTTTCGGTCTTTTCGATTAAATAATTCATAATAATATCTNNATAATAACTATTTGTAAAATCTATATTATACAGTTTTGACAAGATTATTCGAAATAAA ] [+] EMBL BG101667 [ CGTGTCGTAAGACTTAAAGAATGCGTTACGTGGCCGCTTATCTTTTAGCTGTTTTAGGAGGAAAAACTTCTCCTAATCAAAATGATATTGAAAAAATTTTATCATCTGTTGGAATTGAAACAGATGGTGAAAAACTCAAAAAAGTTATCGCAGAACTAAATGGAAAATCAATTGAAGAACTTATTTCGCAAGGAATGGAAAAATTATTATCTATGCCAGTTGGTGGTGGTGTTGCAGTTAGTGCAGA ] [+] EMBL BG101668 [ TGTCGTAAGACTTAAAGAATGCGTTACGTGGCCGCTTATCTTTTAGCTGTTTTAGGAGGAAAAACTTCTCCTAATCAAAATGATATTGAAAAAATTTTATCATCTGTTGGAATTGAAACAGATGGTGAAAAACTTAAAAAAGTTATCGCAGAACTAAATGGAAAATCAATTGAAGAACTTATTTCGCAAGGAATGGAAAAATTATTATCTATGCCAGTTGGTGGTGGTG TGCAGTTAGTGCAGAT ] [+] EMBL BI510594 [ AAAGAATGCGTTACGTGGCCGCTTATCTTTTAGCTGTTTTAGGAGGAAAAACTTCTCCTAATCAAAATGATATTGAAAAAATTTTATCATCTGTTGGAATTGAAACAGATGGTGAAAAACTTAAAAAAGTTATCGCAGAACTAAATGGAAAATCAATTGAAGAACTTATTTCGCAAGGAATGGAAAAATTATTATCTATGCCAGTTGGTGGTGGTGTTGCAGTTAGTGCAGATGCTGCACCAGTTGGAGGTACTACTGCTCCAGCTGAAGAAAAGAAAGAAGAAAAGAAACCAGCAAAAGAAGAATCTGAATCAGAAGATGATGATATGGGTTTCGGTCTTTTCGATTAAATAATTCATAATAATATCTGTATAATAACTATTTGTAAAATCTATATTATACAGTTTTGACAAGATTATTCGAAATAAATTATATTTTTAATTTNNNAAAAAAA] consensusID : consensus_249#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence [TNATAAGCGGTGGTNGCGGCCGAGGTCACGTTTCGTGTNGTAAGACTTAAAGANTGCGTTACGTGGCCGCTTATCTTTTAGCTGTTTTAGGAGGAAAAACTTCTCCTAATCAAAATGATATTGAAAAAATTTTATCATCTGTTGGAATTGAAACAGATGGTGAAAAACTTAAAAAAGTTATCGCAGAACTNAATGGAAAATCAATTGAAGAACTTATTTCGCAAGGAATGGAAAAATTATTATCTATGCCAGTTGGTGGTGGTGTTGCAGT] [+] EMBL BG101669 [TNATAAGCGGTGGTNGCGGCCGAGGTCACGTTTCGTGTNGTAAGACTTAAAGANTGCGTTACGTGGCCGCTTATCTTTTAGCTGTTTTAGGAGGAAAAACTTCTCCTAATCAAAATGATATTGAAAAAATTTTATCATCTGTTGGAATTGAAACAGATGGTGAAAAACTTAAAAAAGTTATCGCAGAACTNAATGGAAAATCAATTGAAGAACTTATTTCGCAAGGAATGGAAAAATTATTATCTATGCCAGTTGGTGGTGGTGTTGCAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_249#0 GCAACTAATCGAACGTATTTTCCTTGTTGAGCGTGTACCACGTTTCGTGTCGTAAGACTT 60 consensus_249#1 -----TNATAAGCGGTGGTNGCG--GCCGAG-----GTCACGTTTCGTGTNGTAAGACTT 48 * ** ** * * * *** ************ ********* consensus_249#0 AAAGAATGCGTTACGTGGCCGCTTATCTTTTAGCTGTTTTAGGAGGAAAAACTTCTCCTA 120 consensus_249#1 AAAGANTGCGTTACGTGGCCGCTTATCTTTTAGCTGTTTTAGGAGGAAAAACTTCTCCTA 108 ***** ****************************************************** consensus_249#0 ATCAAAATGATATTGAAAAAATTTTATCATCTGTTGGAATTGAAACAGATGGTGAAAAAC 180 consensus_249#1 ATCAAAATGATATTGAAAAAATTTTATCATCTGTTGGAATTGAAACAGATGGTGAAAAAC 168 ************************************************************ consensus_249#0 TTAAAAAAGTTATCGCAGAACTAAATGGAAAATCAATTGAAGAACTTATTTCGCAAGGAA 240 consensus_249#1 TTAAAAAAGTTATCGCAGAACTNAATGGAAAATCAATTGAAGAACTTATTTCGCAAGGAA 228 ********************** ************************************* consensus_249#0 TGGAAAAATTATTATCTATGCCAGTTGGTGGTGGTGTTGCAGTTAGTGCAGATGCTGCAC 300 consensus_249#1 TGGAAAAATTATTATCTATGCCAGTTGGTGGTGGTGTTGCAGT----------------- 271 ******************************************* consensus_249#0 CAGTTGGAGGTACTACTGCTCCAGCTGAAGAAAAGAAAGAAGAAAAGAAACCAGCAAAAG 360 consensus_249#1 ------------------------------------------------------------ consensus_249#0 AAGAATCTGAATCAGAAGATGATGATATGGGTTTCGGTCTTTTCGATTAAATAATTCATA 420 consensus_249#1 ------------------------------------------------------------ consensus_249#0 ATAATATCTNNATAATAACTATTTGTAAAATCTATATTATACAGTTTTGACAAGATTATT 480 consensus_249#1 ------------------------------------------------------------ consensus_249#0 CGAAATAAATTATATTTTTAATTTNNNAAAAAAA 514 consensus_249#1 ---------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |