These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_250#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 546 fasta sequence [AAATCGACGATGAAAAAGCGCGGGAAATTATATTAAAGACGGAAGAACGCGCAAAAAGGGTGTTGGAAGAGCGAGAAGGAGTGGTGGTTTCAGAAATGGCCATCGAAGACACGGCCCGTGATTTCACGATAGAATCGGTGGTCGATCGTGCACAGATCACGTCGGAGACATTGCAAACTGTCTCCGTGTCGGAAGTGCACACGGAGGCCAGCGTTCAAGAGATCAGACGAGTGGACACAAAAAAAGAAAAAGAAATATTAGACAAAAAAGAAAAAGAAATATTAGACAAAAAAGAAAAAGAAAAGTTAGAGAAAAAAGATAAAGAAACATCAGGAAAAAAAGACAAGGAAACATCAGGGAAAAAAGACAAGGAAATATCAGAAAAAAAAGATAAGGAAACATTAGAAAAAAAAAAAAAAAAANNNCCAAAAGAAAAAGGTATCCCTTAAATTCACCATAGACTGTACACATCCTGCAGANGATAATATTATGGATGTAGCTAATTTCGAAAAATATTTACATGAAAGAATTAAAGTTGCTGGCAAA] [+] EMBL BI510984 [AAATCGACGATGAAAAAGCGCGGGAAATTATATTAAAGACGGAAGAACGCGCAAAAAGGGTGTTGGAAGAGCGAGAAGGAGTGGTGGTTTCAGAAATGGCCATCGAAGACACGGCCCGTGATTTCACGATAGAATCGGTGGTCGATCGTGCACAGATCACGTCGGAGACATTGCAAACTGTCTCCGTGTCGGAAGTGCACACGGAGGCCAGCGTTCAAGAGATCAGACGAGTGGACACAAAAAAAGAAAAAGAAATATTAGACAAAAAAGAAAAAGAAATATTAGACAAAAAAGAAAAAGAAAAGTTAGAGAAAAAAGATAAAGAAACATCAGGAAAAAAAGACAAGGAAACATCAGGGAAAAAAGACAAGGAAATATCAGAAAAAAAAGATAAGGAAACATTAGAAAAAAAAAAAAAAAAANNNCCAAAAGAAAAAGGTATCCCTTAAATTCACCATAGACTGTACACATCCTGCAGANGATAATATTATGGATGTAGCTAATTTCGAAAAATATTTACATGAAAGAATTAAAGTTGCTGGCAAA] [+] EMBL BI511115 [ GGGAAATTATATTAAAGACGGAAGAACGCGCAAAAAGGGTGTTGGAAGAGCGAGAAGGAGTGGTGGTTTCAGAAATGGCCATCGAAGACACGGCCCGTGATTTCACGATAGAATCGGTGGTCGATCGTGCACAGATCACGTCGGAGACATTGCAAACTGTCTCCGTGTCGGAAGTGCACACGGAGGCCAGCGTTCAAGAGATCAGACGAGTGGACACAAAAAAAGAAAAAGAAATATTAGACAAAAAAGAAAAAGAAATATTAGACAAAAAAGAAAAAGAAAAGTTAGAGAAAAAAGATAAAGAAACATCAGGAAAAAAAGACAAGGAAACATCAGGGAAAAAAGACAAGGAAATATCAGAAAAAAAAGATAAGGAAACATTAGAA ] [+] EMBL BI510661 [ TATATTAAAGACGGAAGAACGCGCAAAAAGGGTGTTGGAAGAGCGAGAAGGAGTGGTGGTTTCAGAAATGGCCATCGAAGACACGGCCCGTGATTTCACGATAGAATCGGTGGTCGATCGTGCACAGATCACGTCGGAGACATTGCAAACTGTCTCCGTGTCGGAAGTGCACACGGAGGCCAGCGTTCAAGAGATCAGACGAGTGGACACAAAAAAAGAAAAAGAAATATTAGACAAAAAAGAAAAAGAAATATTAGACAAAAAAGAAAAAGAAAAGTTAGAGAAAAAAGATAAAGAAACATCAGGAAAA ] consensusID : consensus_250#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 502 fasta sequence [GTAAACATGGCTCCGCCTACTACAAAGAAGTCCAAGGGACCAGCCATTAAAAAACAGGCCCTTCGGGGTAAAGGCCAAAAGAAAAAGGTATCCCTTAAATTCACCATAGACTGTACACATCCTGCAGAAGATAATATTATGGATGTAGCTAATTTCGAAAAATATTTACATGAAAGAATTAAAGGTTGCTGGCAAAACAAATAATTTTGGTAACAGGTGTTACATTGGAAAGGGATAAGATGAAACTATCTGTTAACAGTGATATCGATTTTTCTAAACGGTATCTCAAATATCTTACAAAAAAATATTTGAAAAAAAATAAATTACGTGATTGGTTACGTGTTGTATCAAAAGACAAAGNAACCTATGAGTTAAGGTACTTCCAGATTAACAGTCAAGAAGATGATGATGAAGAAGATGCAGAATAAAATTTTAATTGTATGATGCAATTACAGAATTATCTGTACATATTTCTACTAATAAATAATAGGAAAAAAAAAAA] [+] EMBL BG101654 [GTAAACATGGCTCCGCCTACTACAAAGAAGTCCAAGGGACCAGCCATTAAAAAACAGGCCCTTCGGGGTAAAGGCCAAAAGAAAAAGGTATCCCTTAAATTCACTATAGACTGTACACATCCTGCAGAAGATAATATTATGGATGTAGCTAATTTCGAAAAATATTTACATGAAAGAATTAAAGGTTGCTGGCAAAACAAATAATTTTGGTAACAGGTGTTACATTGGAAAGGGATAAGATGAAACTATCTGTTAACAGTGATATCGATTTTTCTAAACGGTATCTCAAATATCTTACAAAAAAATATTTG AAAAAAATAAATTACGTGATTGGTTACGTGTTGT TCAAAAGACAAAGN ] [+] EMBL BI505438 [ TACAAAGAAGTCCAAGGGACCAGCCATTAAAAAACAGGCCCTTCGGGGTAAAGGCCAAAAGAAAAAGGTATCCCTTAAATTCACCATAGACTGTACACATCCTGCAGAAGATAATATTATGGATGTAGCTAATTTCGAAAAATATTTACATGAAAGAATTAAA GTTGCTGGCAAAACAAATAATTTTGGTAACA GTGTTACATTGGAAAGGGATAAGATGAAACTATCTGTTAACAGTGATATCGATTTTTCTAAACGGTATCTCAAATATCTTACAAAAAAATATTTGAAAAAAAATAAATTACGTGATTGGTTACGTGTTGTATCAAAAGACAAAGAAACCTATGAGTTAAGGTACTTCCAGATTAACAGTCAAGAAGATGATGATGAAGAAGATGCAGAATAAAATTTTAATTGTATGATGCAATTACAGAATTATCTGTACATATTTCTACTAATAAATAATAGGAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_250#0 AAATCGACGATGAAAAAGCGCGGGAAATTATATTAAAGACGGAAGAACGCGCAAAAAGGG 60 consensus_250#1 --------GTAAACATGGCTCCGCCTACTACAAAGAAGTCCAAGGGACCAGCCATTAAAA 52 * * * ** * * * ** * *** * * * ** ** * * consensus_250#0 TGTTGGAAGAGCGAGAAGGAGTGGTGGTTTCAGAAATGGCCATCGAAGACACGGCCCGTG 120 consensus_250#1 AACAGGCCCTTCGGGGTAAAGGCCAAAAGAAAAAGGTATCCCTTAAATTCA---CCATAG 109 ** ** * ** * * * ** * ** ** ** * consensus_250#0 ATTTCACGATAGAATCGGTGGTCGATCGTGCACAGATCACGTCGGAGACATTGCAAACTG 180 consensus_250#1 ACTGTAC---ACATCCTGCAGAAGATAATATTATGG--ATGTAGCTAATTTCGAAAAATA 164 * * ** * * * * * *** * * * ** * * * * *** * consensus_250#0 TCTCCGTGTCGGAAGTGCACACGGAGGCCAGCGTTCAAGAGATCAG--ACGAGTGG-ACA 237 consensus_250#1 TTTACATGAAAGAATTAAAGGTTGCTGGCAAAACAAATAATTTTGGTAACAGGTGTTACA 224 * * * ** *** * * * * ** * * * * ** *** *** consensus_250#0 CAAAAAAAGAAAAAGAAATATTAGACAAAAAAGAAAAAGAAATATTAGACAAAAAAGAAA 297 consensus_250#1 TTGGAAAGGGATAAGATGAAACTATCTGTTAACAGTGATATCGATTTTTCTAAACGGTAT 284 *** * * **** * * ** * * * *** * *** * * consensus_250#0 AAGAAAAGTTAGAGAAAAAAGATAAAGAAACATCAGGAAAAAAAGACAAGGAAACATCAG 357 consensus_250#1 CTCAAATATCTTACAAAAAAATATTTGAAAAAAAATAAATTACGTGATTGGTTACGTGTT 344 *** * * ****** **** * * ** * ** ** * consensus_250#0 GGAA-AAAAGACAAGGAAATATCAGAAAAAAAAGATAAGGAAACATTAGAAAAAAAAAAA 416 consensus_250#1 GTATCAAAAGACAAAGNAACCT-------ATGAGTTAAGGTACTTCCAGATTAACAGTCA 397 * * ********* * ** * * ** ***** * *** ** * * consensus_250#0 AAAAAANNNCCAAAAGAAAAAGGTATCCCTTAAATTCACCATAGACTGTACACATCCTGC 476 consensus_250#1 AGAAGATGATGATGAAGAAGATGCA------GAATAAAATTTTAATTGTATG----ATGC 447 * ** * * * ** * * * *** * * * **** *** consensus_250#0 AGANGATAATATTATGGATGTAGCTAATTTCGAAAAATATTTACATGAAAGAATTAAAGT 536 consensus_250#1 A-ATTACAGAATTATC--TGTACATATTTCTACTAATAAATAATAGGAAAAAAAAAAA-- 502 * * * * ***** **** ** ** ** * * * * **** ** *** consensus_250#0 TGCTGGCAAA 546 consensus_250#1 ---------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |