These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_257#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 616 fasta sequence [AAACTAAAATTCCCATAAGTACTTTTAAGTGTGATTCGTATATTATAACGCATATATATATATGCATGCATACCGGTTATATTTAACTATTCGTTAAACGATATGTGTATTATTGCGTAAACTATAAGACGTTCGAAGACGTTCATCGTACGTATGTTATGTATATGCGTTTGGAACCGCTCGGATAAGTAATTGACACAGTCGATACAGCAGACAGAGTGGTGGTTTACGTGACAGCTTAGACCAGGTTAAGGTTATGTCGAAAATTCGATCGAGCGAACCAATGTGTGTGATACTCGAAATATATTCATATACGTGGTCGGGAAATGACGTGAAATTCCTACGGTCGAGACACCGTGCCGTTGATTCTTAATATTGGATTTATCTTCACGGTCCTCGTTTAAAATATCTTCCGATTTTAATACTCGCTTCAGAAAAATTGACATTTTTCCGTTTATAAGGTTAACCTGCTTAAGTGCACACGTATGGAAATTCAAGCGAAATTCTCGCCGATTCTTGTTGATATTTTAAATTGCGAAGCCAGGAAAGATCTGTTTCG--GCTTTCAATTCGAGTTCAATCCGGGGAAAAAGGAAATTATAGCGAATATATCGATAT] [-] EMBL BE844530 [AAACTAAAATTCCCATAAGTACTTTTAAGTGTGATTCGTATATTATAACGCATATATATATATGCATGCATACCGGTTATATTTAACTATTCGTTAAACGATATGTGTATTATTGCGTAAACTATAAGACGTTCGAAGACGTTCATCGTACGTATGTTATGTATATGCGTTTGGAACCGCTCGGATAAGTAATTGACACAGTCGATACAGCAGACAGAGTGGTGGTTTACGTGACAGCTTAGACCAGGTTAAGGTTATGTCGAAAATTCGATCGAGCGAACCAATGTGTGTGATACTCGAAATATATTCATATACGTGGTCGGGAAATAATGTGAAATTCTTACGGTCGAAACATCGTGCCGTTGATTCTTAATATTGGATTTATCTTCACGGTCCTCGTTTAAAATATCTTCCGATTTTAATACTCGCTTCAGAAAAATTGACATTTTTCCGTTTATAAGGTTAACCTGCTTAAGTGCACACGTATGGAAATTCAAGCGAAATTCTCGCCGATTCTTGTTGATATTTTAAATTGCGAAGCCAGAAAAAATCTGTTTCGAATTTTTCAATTCGAATTCA ] [+] EMBL BI507481 [ AAACGATATGTGTATTATTGCGTAAACTATAAGACGTTCGAAGACGTTCATCGTACGTATGTTATGTATATGCGTTTGGAACCGCTCGGATAAGTAATTGACACAGTCGATACAGCAGACAGAGTGGTGGTTTACGTGACAGCTTAGACCAGGTTAAGGTTATGTCGAAAATTCGATCGAGCGAACCAATGTGTGTGATACTCGAAATATATTCATATACGTGGTCGGGAAATGACGTGAAATTCCTACGGTCGAGACACCGTGCCGTTGATTCTTAATATTGGATTTATCTTCACGGTCCTCGTTTAAAATATCTTCCGATTTTAATACTCGCTTCAGAAAAATTGACATTTTTCCGTTTATAAGGTTAACCTGCTTAAGTGCACACGTATGGAAATTCAAGCGAAATTCTCGCCGATTCTTGTTGATATTTTAAATTGCGAAGCCAGGAAAGATCTGTTTCG GCTTTCAATTCGAGTTCAATCCGGGGAAAAAGGAAATTATAGCGAATATATCGATAT] [+] EMBL BI504145 [ GCGAACCAATGTGTGTGATACTCGAAATATATTCATATACGTGGTCGGGAAATGACGTGAAATTCCTACGGTCGAGACACCGTGCCGTTGATTCTTAATATTGGATTTATCTTCACGGTCCTCGTTTAAAATATCTTCCGATTTTAATACTCGCTTCAGAAAAATTGACATTTTTCCGTTTATAAGGTTAACCTGCTTAAGTGCACACGTATGGAAATTCAAGCGAAATTCTCGCCGATTCTTGTTGATATTTTAAATTGCGAAGCCAGGAAAGATCTGTTTCG GCTTTCA ] consensusID : consensus_257#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 453 fasta sequence [AATAGGTGTCGCGGAACGAGAAAATTTACAATGATTTTTGCGCTATGCTAAATTCGAGTCTTCGCAGTCTACGGTAAAATCTTAGTGATCGGATACAGGAAGAAATCCTGTAACCATAACATAAGCGTTTATGGTATTTTATATTCTTTGGAATGCTTATAGTAGCGTATTCCACGAGCATTCGTTCGTTATTTATTATCTTCTGCTTTTATTTCACTAGTATTATTTCTCGCAACTATTTCCTTCTTTTTCACTGTGGCAATATCATCTTTGGTTCAAACTCTTCTCTATACATAAAAAGTCGCAAAGATATGAAAGATAAGATGCAAGTGATGGGTATTCATATGTAGATACACGACTGCTACAGATATATCGATATATTTGCTATAATTTCCTTTTTCCCCGGATTGAATTCGAATTGAAAAATTCGAAACAGATTTTTTCTGGCTTCGC] [+] EMBL BI514389 [AATAGGTGTCGCGGAACGAGAAAATTTACAATGATTTTTGCGCTATGCTAAATTCGAGTCTTCGCAGTCTACGGTAAAATCTTAGTGATCGGATACAGGAAGAAATCCTGTAACCATAACATAAGCGTTTATGGTATTTTATATTCTTTGGAATGCTTATAGTAGCGTATTCCACGAGCATTCGTTCGTTATTTATTATCTTCTGCTTTTATTTCACTAGTATTATTTCTCGCAACTATTTCCTTCTTTTTCACTGTGGCAATATCATCTTTGGTTCAAACTCTTCTCTATACATAAAAAGTCGCAAAGATATGAAAGATAAGATGCAAGTGATGGGTATTCATATGTAGATACACGACTGCTACAGATATATCGATATATTTGCTATAATTTCCTTTTTCCCCGGATTGAATTCGAATTGAAAAATTCGAAACAGATTTTTTCTGGCTTCGC] [+] EMBL BI514376 [AATAGGTGTCGCGGAACGAGAAAATTTACAATGATTTTTGCGCTATGCTAAATTCGAGTCTTCGCAGTCTACGGTAAAATCTTAGTGATCGGATACAGGAAGAAATCCTGTAACCATAACATAAGCGTTTATGGTATTTTATATTCTTTGGAATGCTTATAGTAGCGTATTCCACGAGCATTCGTTCGTTATTTATTATCTTCTGCTTTTATTTCACTAGTATTATTTCTCGCAACTATTTCCTTCTTTTTCACTGTGGCAATATCATCTTTGGTTCAAACTCTTCTCTATACATAAAAAGTCGCAAAGATATGAAAGATAAGATGCAAGTGATGGGTATTCATATGTAGATACACGACTGCTACAGATATATCGATATATTTGCTATAATTTCCTTTTTCCCCGGATTGAATTCGAATTGAAAAATTCGAAACAGATTTTTTCTGGCTTC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_257#0 AAACTAAAATTCCCATAAGTACTTTTAAGTGTGATTCGTATATTATAACGCATATATATA 60 consensus_257#1 ------------------------------------------------------------ consensus_257#0 TATGCATGCATACCGGTTATATTTAACTATTCGTTAAACGATATGTGTATTATTGCGTAA 120 consensus_257#1 ---------------------------------------AATAGGTGT-----CGCG-GA 15 *** **** *** * consensus_257#0 ACTATAAGACGTTCGAAGACGTTCATCGTACGTATGTTATGTATATGCGTTTGGAACCGC 180 consensus_257#1 ACGAGAAAATTTACAATGATTTTTG-CGC---TATGCTAAATTCGAGTCTTCGCAGT--C 69 ** * ** * * * * ** ** ** **** ** * * ** * * * consensus_257#0 TCGGATAAGTAATTGACACAGTCGATACAGCAGACAGAGTGGTGGT--TTACGTGACAGC 238 consensus_257#1 TACGGTAAAATCTTAGTG-ATCGGATACAGGAAGAAATCCTGTAACCATAACATAAGCGT 128 * * *** ** * ******* * * ** * ** * * * consensus_257#0 TTAGACCAGGTTAAGGTTATGTCGAAAATTCGATCGAGCGAAC-CAATGTGTGTGATACT 297 consensus_257#1 TTATGGTATTTTATA-TTCTTTGGAATGCTTATAGTAGCGTATTCCACGAGCATT-CGTT 186 *** * *** ** * * *** * **** * * * * * * * consensus_257#0 CGAAATATATTCATATACGTGGTCGGGAAATGACGTGAAATTCCTACGGTCGAGACACCG 357 consensus_257#1 CGTTATTTATTATCTTCTGCTTTTATTTCACTAGTATTATTTCTCGCAACTATTTCCTTC 246 ** ** **** * * * * * * *** * * consensus_257#0 TGCCGTTGATTCTTAATATTGGATTTATCTTCACGGTCCTCGTTTAAAATATCTTCCGAT 417 consensus_257#1 TTTTTCACTGTGGCAATATCATCTTTGG-TTCAAACTCTTCTCTATACATAAAAAGTCGC 305 * * ***** *** **** ** ** * * *** consensus_257#0 TTTAATACTCGCTTCAGAAA--AATTGACATTTTTCCGTTTATAAGGTTAACCTGCTTAA 475 consensus_257#1 AAAGATATGAAAGATAAGATGCAAGTGATGGGTATTCATATGTA--GATACACGACT--G 361 *** * * ** *** * * * * * ** * ** * ** consensus_257#0 GTGCACACGTATGGAAATTCAAGCGAAATTCTCGCCGATTCTTGTTGATATTTTAAATTG 535 consensus_257#1 CTACAGATATATCGATATATTTGCTATAATTTCCTTTTTCCCCGGATTGAATTCGAATTG 421 * ** * *** ** ** ** * * * ** * * * * ** ***** consensus_257#0 CGAAGCCAGGAA-AGATCTGTTTCGGCTTTCAATTCGAGTTCAATCCGGGGAAAAAGGAA 594 consensus_257#1 AAAAATTCGAAACAGATTTTTTCTGGCTTCGC---------------------------- 453 ** * ** **** * ** ***** consensus_257#0 ATTATAGCGAATATATCGATAT 616 consensus_257#1 ---------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |