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Apis mellifera
cluster # 2622 cluster # 2622       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2622#0 length = 627 sequences # 1  
consensus_2622#1 length = 580 sequences # 1  

consensusID : consensus_2622#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 627
fasta sequence
                              [TTTCTTAGGTATCTATTAGAAGGATTACACGAGGATGTGAACAGGGTGACGGTGAAACCGCAACCGATACACACGGATATTCCTGAAATGTACACAGACAGTCAGAAGGCAGTAGAAAGCTGGAAACGCTACTTACGTAGTGAAGATAGTATGATAGTGGACGTTTTCGTGGGTCAATTACGTTCGTCGTTACATTGCACTTCTTGTGACCATGTGTCAGTCACATTGGATCCTTTCTGGGATCTCAGTTTGCCAATACCGGCTAGAAGTGGTACAGTGAAGTTGAGCCAATGTTTGGAGCATTTCACGCGAGAAGAGGTGCTCGACGGTGATGAAAAACCGACTTGTTCCAAGTGTCAGATGAGGAGAAAGTGCACGAAAAGTTTCAGCATACAAAAGTTCCCGAAAATTCTTGTTATTCACTTAAAACGTTTCTCACCAATGGAACGATTCCGCAGCAAGCTAAATGTGATGGTAGATTTTCCATTGACAGGTTTGGATCTCAGTGCCTTTGCTGCGCCTAGAGTTCCGGGTTGTACGTACAATTTATACGGTGTCGCGAACCATTCGGGCACAACACACTCCGGTCATTACACAGCATATTGTAAGCATCCATACTCGGCAGAA]

[+] EMBL BI508824             [TTTCTTAGGTATCTATTAGAAGGATTACACGAGGATGTGAACAGGGTGACGGTGAAACCGCAACCGATACACACGGATATTCCTGAAATGTACACAGACAGTCAGAAGGCAGTAGAAAGCTGGAAACGCTACTTACGTAGTGAAGATAGTATGATAGTGGACGTTTTCGTGGGTCAATTACGTTCGTCGTTACATTGCACTTCTTGTGACCATGTGTCAGTCACATTGGATCCTTTCTGGGATCTCAGTTTGCCAATACCGGCTAGAAGTGGTACAGTGAAGTTGAGCCAATGTTTGGAGCATTTCACGCGAGAAGAGGTGCTCGACGGTGATGAAAAACCGACTTGTTCCAAGTGTCAGATGAGGAGAAAGTGCACGAAAAGTTTCAGCATACAAAAGTTCCCGAAAATTCTTGTTATTCACTTAAAACGTTTCTCACCAATGGAACGATTCCGCAGCAAGCTAAATGTGATGGTAGATTTTCCATTGACAGGTTTGGATCTCAGTGCCTTTGCTGCGCCTAGAGTTCCGGGTTGTACGTACAATTTATACGGTGTCGCGAACCATTCGGGCACAACACACTCCGGTCATTACACAGCATATTGTAAGCATCCATACTCGGCAGAA]


>consensus_2622#0 TTTCTTAGGTATCTATTAGAAGGATTACACGAGGATGTGAACAGGGTGACGGTGAAACCG CAACCGATACACACGGATATTCCTGAAATGTACACAGACAGTCAGAAGGCAGTAGAAAGC TGGAAACGCTACTTACGTAGTGAAGATAGTATGATAGTGGACGTTTTCGTGGGTCAATTA CGTTCGTCGTTACATTGCACTTCTTGTGACCATGTGTCAGTCACATTGGATCCTTTCTGG GATCTCAGTTTGCCAATACCGGCTAGAAGTGGTACAGTGAAGTTGAGCCAATGTTTGGAG CATTTCACGCGAGAAGAGGTGCTCGACGGTGATGAAAAACCGACTTGTTCCAAGTGTCAG ATGAGGAGAAAGTGCACGAAAAGTTTCAGCATACAAAAGTTCCCGAAAATTCTTGTTATT CACTTAAAACGTTTCTCACCAATGGAACGATTCCGCAGCAAGCTAAATGTGATGGTAGAT TTTCCATTGACAGGTTTGGATCTCAGTGCCTTTGCTGCGCCTAGAGTTCCGGGTTGTACG TACAATTTATACGGTGTCGCGAACCATTCGGGCACAACACACTCCGGTCATTACACAGCA TATTGTAAGCATCCATACTCGGCAGAA



consensusID : consensus_2622#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 580
fasta sequence
                              [TATTGTAAGCATCCATACTCGGCAGAATGGCACGAGTACAATGATAGCCGGGTGTCCGCGGTTCCAGCGCGATCGGTCGTTTCCAACGAAGCCTACGTACTGTTCTACGAGCAGCAGCCTCACAGCTCTCACTTGTAACCTTACGCCATGCTTAGAGTATGAAAAAAAAAAAAAAAAACGACCATCTTGCCTCTCAATACCTCAGTCCAGCATATAGTATAAAAAAAAGAAAACCGACAAAGAGAAAAGAAAAAATTAATAATAAGTGAAACTATACTTTATCGTGTGGTATTGAAAAGCGACTAAACATTGAACGTTGAGGTCGTTTTTATCGAGAATAAAAAACGGATCGTGTGTGTATTNNGTGACTATTGGCGATAATCATGTTTCCATTAAAGCCAAAATTTTGTTTTTCCTCGTGGATATTAGATATATCTCATTCGTGGTCCAGTCATTTTTACTTCGGCTTCTTTAGAAACCAGACACTTTAGTGCATTTTCCGATACGNAGGTTTATTACAAAATAGTCCTCTGAAAGATTAATAAGATGCTTAATATGAGCAAAACATTTTTCAGAAGTT]

[+] EMBL BI508930             [TATTGTAAGCATCCATACTCGGCAGAATGGCACGAGTACAATGATAGCCGGGTGTCCGCGGTTCCAGCGCGATCGGTCGTTTCCAACGAAGCCTACGTACTGTTCTACGAGCAGCAGCCTCACAGCTCTCACTTGTAACCTTACGCCATGCTTAGAGTATGAAAAAAAAAAAAAAAAACGACCATCTTGCCTCTCAATACCTCAGTCCAGCATATAGTATAAAAAAAAGAAAACCGACAAAGAGAAAAGAAAAAATTAATAATAAGTGAAACTATACTTTATCGTGTGGTATTGAAAAGCGACTAAACATTGAACGTTGAGGTCGTTTTTATCGAGAATAAAAAACGGATCGTGTGTGTATTNNGTGACTATTGGCGATAATCATGTTTCCATTAAAGCCAAAATTTTGTTTTTCCTCGTGGATATTAGATATATCTCATTCGTGGTCCAGTCATTTTTACTTCGGCTTCTTTAGAAACCAGACACTTTAGTGCATTTTCCGATACGNAGGTTTATTACAAAATAGTCCTCTGAAAGATTAATAAGATGCTTAATATGAGCAAAACATTTTTCAGAAGTT]


>consensus_2622#1 TATTGTAAGCATCCATACTCGGCAGAATGGCACGAGTACAATGATAGCCGGGTGTCCGCG GTTCCAGCGCGATCGGTCGTTTCCAACGAAGCCTACGTACTGTTCTACGAGCAGCAGCCT CACAGCTCTCACTTGTAACCTTACGCCATGCTTAGAGTATGAAAAAAAAAAAAAAAAACG ACCATCTTGCCTCTCAATACCTCAGTCCAGCATATAGTATAAAAAAAAGAAAACCGACAA AGAGAAAAGAAAAAATTAATAATAAGTGAAACTATACTTTATCGTGTGGTATTGAAAAGC GACTAAACATTGAACGTTGAGGTCGTTTTTATCGAGAATAAAAAACGGATCGTGTGTGTA TTNNGTGACTATTGGCGATAATCATGTTTCCATTAAAGCCAAAATTTTGTTTTTCCTCGT GGATATTAGATATATCTCATTCGTGGTCCAGTCATTTTTACTTCGGCTTCTTTAGAAACC AGACACTTTAGTGCATTTTCCGATACGNAGGTTTATTACAAAATAGTCCTCTGAAAGATT AATAAGATGCTTAATATGAGCAAAACATTTTTCAGAAGTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2622#0      TTTCTTAGGTATCTAT---TAGAAGGATTACACGAGGATGTGAACAGGGTGACGGTGAAA 57
consensus_2622#1      TATTGTAAGCATCCATACTCGGCAGAATGGCACGAGTACA-----ATGATAGCCGGGTGT 55
                      * *  ** * *** **     * ** **  ****** *       * * *  * * *   

consensus_2622#0      CCGCAA--CCGATACACACGGATATTCCTGA-AATGTACACAGACAGTCAGAAGGCAGTA 114
consensus_2622#1      CCGCGGTTCCAGCGCGATCGGTCGTTTCCAACGAAGCCTACGTACTGTTCTACG--AGCA 113
                      ****    **    *   ***   ** *  *  * *   **  ** **   * *  ** *

consensus_2622#0      GAAAGCTGGAAACGCT-ACTTACGTAGTGAAGATAGTATGATAGTGGACGTTTTCGTGGG 173
consensus_2622#1      GCAGCCTCACAGCTCTCACTTGT------AACCTTACGCCATGCTTAGAGTATGAAAAAA 167
                      * *  **   * * ** ****        **  *      **  *    ** *       

consensus_2622#0      TCAATTACGTTCGTCGTTACATTGCACTTCTTGTGACCATGTGTCAGTCACATTGGATCC 233
consensus_2622#1      AAAAAAAAAAACGAC----CATCTTGCCTCT-----CAATACCTCAGTC-CAGCATATAG 217
                        **  *    ** *    ***    * ***     * **   ****** **    **  

consensus_2622#0      TTTCTGGGATCTCAGTTTGCCAATACCGGCTAGAAGTGGTACAGTGAAGTTGAGCCAATG 293
consensus_2622#1      TATAAAAAAAAGAAAACCGACAAAGAGAAAAGAAAAAATTAATAATAAGTGAAACTATAC 277
                      * *     *    *    * ***          **    **     ****  * * *   

consensus_2622#0      TTTGGAGCATTTCACGCGAGAAGAGGTGCTCGACGGTGA-TGAAAAACCGACTTGTTCCA 352
consensus_2622#1      TTTATCGTGTGGTATT---GAAAAGCGACTAAACATTGAACGTTGAGGTCGTTTTTATCG 334
                      ***   *  *   *     *** **   **  **  ***  *   *      ** *  * 

consensus_2622#0      AGTGTCAGATGAGGAGAAAGTGCACGAAAAGTTTCAGCATACAAAAGTTCCCGAAAATTC 412
consensus_2622#1      AGAATAAAAAACGGATCGTGTGTGTATTNNGTGACTATTGGCGATAATC-----ATGTTT 389
                      **  * * *   ***    ***        **  *      * * * *      *  ** 

consensus_2622#0      TTGTTATTCACTTAAAACGTTTCTCACCAATGGAACGATTCCGCAGCAAGCTAAATGTGA 472
consensus_2622#1      CCATTA--AAGCCAAAATTTTGTTTTTCCTCGTGGATATTAGATA-TATCTCATTCGTGG 446
                         ***   *   ****  **  *   *   *     ***    *  *    *   *** 

consensus_2622#0      T--GGTAGATTTTCCATTGACAGGTTTGGATCTCAGTGCCTTTGCTGCGCCTAGAGTTCC 530
consensus_2622#1      TCCAGTCATTTTTACTTCGGCTTCTTTAGAAACCAGACACTTTAGTGCATTT-----TCC 501
                      *   **   **** * * * *   *** **   ***   ****  ***   *     ***

consensus_2622#0      GGGTTGTACGTACAATTTATA-CGGTGTCGCGAACCATTCGGGCACAACACACTCCGGTC 589
consensus_2622#1      GATACGNAGGTTTATTACAAAATAGTCCTCTGAAAGATT----AATAAGATGCTT-AATA 556
                      *    * * **  * *  * *   **     ***  ***     * ** *  **    * 

consensus_2622#0      ATTACACAGCATATTGTAAGCATCCATACTCGGCAGAA 627
consensus_2622#1      TGAGCAAAACATTTTTCAGAAGTT-------------- 580
                          ** * *** **  *    *               




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)