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Apis mellifera
cluster # 263 cluster # 263       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_263#0 length = 733 sequences # 4  
consensus_263#1 length = 580 sequences # 1  

consensusID : consensus_263#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 733
fasta sequence
                              [TTGGCCGCGTTGCGGTTGAACAGCGAGCGCAAAAAGCGATCGTGTACGATCCTCTGTAATGTTGATGCGTTCCCGTTTCGATGGCCTGGAATTAATAATTATATATAGTCGAGTGAGTTAAAAATCGTTAAAAACTCGACGATTCTCGGTACTCTCGTCCCG-TTTTTTTCTCGAGGC-GCGAGACACGTTTTATCACGTTGGAGGGAGAGACGAGAGACGAGAGGATCGTGTGACAATTC-GCGTACCACTCGTTGCGACAGTCAATTAGTTTTAAATTC-AGCTTTTCGCGAGGAGCGATCGCAATGATGCACGAGCAATGAGCCTGTCCCCAAGGATCGAGGGACAGAGAAGGAGAGAAAGAAAAAAGGAATGAAAAAAAAGAATGTCGAAGNGGGTCGAACTTGAATCGAATCCCTCGAAGAGAACAAGAACACAGGTAAACGAGNGGAGACGTAGATCTCGCCGGTCGCGACCTNGACGCGTTGCAACGACGTCCGTCGATCGATATCCCATCGATCGATCTCTCTATCCTGCTTTCGTCATTGTTAACCTTAAATCCTTTTTCCATAATTTTGCCCTGTCCCATAATATGCCCTGTATCCTTGTCCTTGTTTCCTCAACGACTGACGATTCCCTCCTTCCCCCTTTGAAAACCCAGTGAATTTTGTACCGAAATGCGAAACTTGGAAAAGCTACTTTCATATACGGAATTTAATTTTTTCACGAAACATGT]

[+] EMBL BI515845             [TTGGCCGCGTTGCTGTTGAACAGCGAGCGCAAAAAGCGATCGTGTACGATCCTCTGTAATGTTGATGCGTTCCCGTTTCGATGGCCTGGAATTAATAATTATATATAGTCGAGTGAGTTAAAAATCGTTAAAAACTCGACGATTCTCGGTACTCTCGTCCCG TTTTTTTCTCGAGGC GCGAGACACGTTTTATCACGTTGGAGGGAGAGACGAGAGANNNGAGGATCGTGTGACAATTC GCGTACCACTCGTTGCGACAGTCAATTAGTTTTAAATTC AGCTTTTCGCGAGGAGCGATCGCAATGATGCACGAGCAATGAGCCTGTCCCCAAGGATCGAGGGACAGAGAAGGAGAGAAAGAAAAAAGGAATGAAAAAAAAGAATGTCGAAGAGGGTCGAACTTGAATCGAATCCCTCGAAGAGAACAAGAACACAGGTAAACGAGAGGAGACGTAG                                                                                                                                                                                                                                                                                     ]
[+] EMBL BI513737             [          TGCGGTTGAACAGCGAGCGCAAAAAGCGATCGTGTACGATCCTCTGTAATGTTGATGCGTTCCCGTTTCGATGGCCTGGAATTAATAATTATATATAGTCGAGTGAGTTAAAAATCGTTAAAAACTCGACGATTCTCGGTACTCTCGTCCCG TTTTTTTCTCGAGGC GCGAGACACGTTTTATCACGTTGGAGGGAGAGACGAGAGACGAGAGGATCGTGTGACAATTC GCGTACCACTCGTTGCGACAGTCAATTAGTTTTAAATTC AGCTTTTCGCGAGGAGCGATCGCAATGATGCACGAGCAATGAGCCTGTCCCCAAGGATCGAGGGACAGAGAAGGAGAGAAAGAAAAAAGGAATGAAAAAAAAGAATGTCGAAGNGGGTCGAACTTGAATCGAATCCCTCGAAGAGAACAAGAACACAGGTAAACGAGNGGAGACGTAGATCTCGCCGGTCGCGACCTNGACGCGTTGCAACGACGTCCGTCGATCGATATCCCATCGATCGATCTCTCTATCCTGCTTTCCTCATTCTTA                                                                                                                                                                                         ]
[+] EMBL BI515940             [                        GAGCGCAAAAAGCGATCGTGTACGATCCTCTGTAATGTTGATGCGTTCCCGTTTCGATGGCCTGGAATTAATAATTATATATAGTCGAGTGAGTTAAAAATCGTTAAAAACTCGACGATTCTCGGTACTCTCGTCCCG TTTTTTTCTCGAGGC GCGAGACACGTTTTATCACGTTGGAGGGAGAGACGAGAGACGAGAGGATCGTGTGACAATTC GCGTACCACTCGTTGCGACAGTCAATTAGTTTTAAATTC AGCTTTTCGCGAGGAGCGATCGCAATGATGCACGAGCAATGAGCCTGTCCCCAAGGATCGAGGGACAGAGAAGGAGAGAAAGAAAAAAGGAATGAAAAAAAAGAATGTCGAAGNGGGTCGAACTTGAATCGAATCCCTCGAAGAGAACAAGAACACAGGTAAACGAGNGGAGACGTAGATCTCGCCGGTCGCGACCTNNACGCGTTGCAACGACGTCCGTCGATCGATATCCCATCGATCGATCTCTCTATCCT                                                                                                                                                                                                         ]
[-] EMBL BE844472             [                                                                                                                             ttaaAAAACTTGGAGGATTCTCGGTATTCTTGTCCCGTTTTTTTTCTGGAGGCGGCGAGACACGTTTTATCACGTTGGAGGGAGAGACGAGAGACGAGAGGATCGTGTGACAATTCGGGGTACCACTCGTTGCGACAGTCAATTAGTTTTAAATTCAAGCTTTTCGCGAGGAGCGATCGCAATGATGCACGAGCAATGAGCCTGTCCCCAAGGATCGAGGGACAGAGAAGGAGAGAAAGAAAAAAGGAATGAAAAAAAAGAATGTCGAAGAGGGTCGAACTTGAATCGAATCCCTCGAAGAGAACAAGAACACAGGTAAACGAGAGGAGACGTAGATCTCGCCGGTCGCGACCTGGACGCGTTGCAACGACGTCCGTCGATCGATATCCCATCGATCGATGTGTGTATCCTGCTTTCGTCATTGTTAACCTTAAATCCTTTTTCCATAATTTTGCCCTGTCCCATAATATGCCCTGTATCCTTGTCCTTGTTTCCTCAACGACTGACGATTCCCTCCTTCCCCCTTTGAAAACCCAGTGAATTTTGTACCGAAATGCGAAACTTGGAAAAGCTACTTTCATATACGGAATTTAATTTTTTCACGAAACATGT]


>consensus_263#0 TTGGCCGCGTTGCGGTTGAACAGCGAGCGCAAAAAGCGATCGTGTACGATCCTCTGTAAT GTTGATGCGTTCCCGTTTCGATGGCCTGGAATTAATAATTATATATAGTCGAGTGAGTTA AAAATCGTTAAAAACTCGACGATTCTCGGTACTCTCGTCCCGTTTTTTTCTCGAGGCGCG AGACACGTTTTATCACGTTGGAGGGAGAGACGAGAGACGAGAGGATCGTGTGACAATTCG CGTACCACTCGTTGCGACAGTCAATTAGTTTTAAATTCAGCTTTTCGCGAGGAGCGATCG CAATGATGCACGAGCAATGAGCCTGTCCCCAAGGATCGAGGGACAGAGAAGGAGAGAAAG AAAAAAGGAATGAAAAAAAAGAATGTCGAAGNGGGTCGAACTTGAATCGAATCCCTCGAA GAGAACAAGAACACAGGTAAACGAGNGGAGACGTAGATCTCGCCGGTCGCGACCTNGACG CGTTGCAACGACGTCCGTCGATCGATATCCCATCGATCGATCTCTCTATCCTGCTTTCGT CATTGTTAACCTTAAATCCTTTTTCCATAATTTTGCCCTGTCCCATAATATGCCCTGTAT CCTTGTCCTTGTTTCCTCAACGACTGACGATTCCCTCCTTCCCCCTTTGAAAACCCAGTG AATTTTGTACCGAAATGCGAAACTTGGAAAAGCTACTTTCATATACGGAATTTAATTTTT TCACGAAACATGT



consensusID : consensus_263#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 580
fasta sequence
                              [GAGAGAGAGTGTGTGCGTGTGCGTATGTTGAGAAATATAATGCATCAAATATGAAACATTTATCGCCTGATCTCGTGTTCCTCCGCAGTCGATTGAAAATAAAAGAAAGTGAGTATGAGGGAAGAGATATGGTATAGCGTGCCGGTTCATAAACGAGGTTCGTCGTCTCGTAAGTTCTTCTTCGATCAGCGACGGAAAGGAAGAAAATGGATTAGGAGAGGAAAGCGTGTGAGACGAGAACCGCGCGCGTAATTTGACAAAAAGAACGTTAATATAATTATGTACGAGGGGGGGGAAAAAAAAAGAAAAGAACGATGCATGTGTTGAAAGTGAATATCGGAATTAAAAGAAAATAGAGAACAGAGAAAATATGTACTGAAAAGAAAAAGAAAAAAAAAAGAAAGAAAGAAAGAAAGAAAAAAAACCGAGCGGAAGTGTACGCGTGTGAGCGTAACCAGGCAACGCGATGTTCGAAAAGAAAAACAAATTTGGCCACGTTGCGGGTTGAACAGCGAGCGCAAAAAGCGATCGTGTACGATCCTCTGTAATGTTGATGCGTTCCCGTTCGATGGCCTGGAAT]

[+] EMBL BE844473             [GAGAGAGAGTGTGTGCGTGTGCGTATGTTGAGAAATATAATGCATCAAATATGAAACATTTATCGCCTGATCTCGTGTTCCTCCGCAGTCGATTGAAAATAAAAGAAAGTGAGTATGAGGGAAGAGATATGGTATAGCGTGCCGGTTCATAAACGAGGTTCGTCGTCTCGTAAGTTCTTCTTCGATCAGCGACGGAAAGGAAGAAAATGGATTAGGAGAGGAAAGCGTGTGAGACGAGAACCGCGCGCGTAATTTGACAAAAAGAACGTTAATATAATTATGTACGAGGGGGGGGAAAAAAAAAGAAAAGAACGATGCATGTGTTGAAAGTGAATATCGGAATTAAAAGAAAATAGAGAACAGAGAAAATATGTACTGAAAAGAAAAAGAAAAAAAAAAGAAAGAAAGAAAGAAAGAAAAAAAACCGAGCGGAAGTGTACGCGTGTGAGCGTAACCAGGCAACGCGATGTTCGAAAAGAAAAACAAATTTGGCCACGTTGCGGGTTGAACAGCGAGCGCAAAAAGCGATCGTGTACGATCCTCTGTAATGTTGATGCGTTCCCGTTCGATGGCCTGGAAT]


>consensus_263#1 GAGAGAGAGTGTGTGCGTGTGCGTATGTTGAGAAATATAATGCATCAAATATGAAACATT TATCGCCTGATCTCGTGTTCCTCCGCAGTCGATTGAAAATAAAAGAAAGTGAGTATGAGG GAAGAGATATGGTATAGCGTGCCGGTTCATAAACGAGGTTCGTCGTCTCGTAAGTTCTTC TTCGATCAGCGACGGAAAGGAAGAAAATGGATTAGGAGAGGAAAGCGTGTGAGACGAGAA CCGCGCGCGTAATTTGACAAAAAGAACGTTAATATAATTATGTACGAGGGGGGGGAAAAA AAAAGAAAAGAACGATGCATGTGTTGAAAGTGAATATCGGAATTAAAAGAAAATAGAGAA CAGAGAAAATATGTACTGAAAAGAAAAAGAAAAAAAAAAGAAAGAAAGAAAGAAAGAAAA AAAACCGAGCGGAAGTGTACGCGTGTGAGCGTAACCAGGCAACGCGATGTTCGAAAAGAA AAACAAATTTGGCCACGTTGCGGGTTGAACAGCGAGCGCAAAAAGCGATCGTGTACGATC CTCTGTAATGTTGATGCGTTCCCGTTCGATGGCCTGGAAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_263#0      TTGGCCGCGTTGCGGTTGAACAGCGAGCGCAAAAAGCGATCGTGTACGATCCTCTGTAAT 60
consensus_263#1      ------------------GAGAGAGAGTGTGTGC-GTGTGCGTATGTTGAGAAATATAAT 41
                                        * ** *** *      * *  *** *         * ****

consensus_263#0      GTTGATGCGTTCCCGTTTCGATGGCCTGGAATTAATAATTATATATAGTCGAGTGAGT-T 119
consensus_263#1      GCATCAAATATGAAACATTTATCGCCTG-ATCTCGTGTTCCTCCGCAGTCGATTGAAAAT 100
                     *         *      *  ** ***** *  *  *  *  *    ****** ***   *

consensus_263#0      AAAAATCGTTAAAAACTCG--ACGATTCTCGGTACTCTCGTCCCGTTTTTTTCTCGAGGC 177
consensus_263#1      AAAAGAAAGTGAGTATGAGGGAAGAGATATGGTA-TAGCGTGCCGGTTCATAAACGAGGT 159
                     ****     * *  *   *  * **     **** *  *** *** **  *   ***** 

consensus_263#0      GCGA-GACACGTTTTATCACGTTGGAGGGAGAGACGAGAGACGAGAGGATCGTGTGACAA 236
consensus_263#1      TCGTCGTCTCGTAAGTTCTTCTTCGATC-AGCGACGGAAAGGAAGAAAATGGATTAGGAG 218
                      **  * * ***    **   ** **   ** ****  *    ***  ** *  *   * 

consensus_263#0      TTCGCGTACCACTCGTTGCGACAGTCAATTAGTTTTAAATTCAGCTTTTCGCGAGGAGCG 296
consensus_263#1      A--GGAAAGCGTGTGAGACGAGAACCG--------CGCGCGTAATTTGACAAAAAGAACG 268
                        *   * *    *   *** *  *                *  **  *   * ** **

consensus_263#0      AT--CGCAATGATGCACGAGCAATGAGCCTGTCCCCAAGGATCGAGGGACAGAGAAGGAG 354
consensus_263#1      TTAATATAATTATGTACGAGGGGGGGGAAAAAAA--AAGAAAAGAACGATGCATGTGTTG 326
                      *     *** *** *****    * *         *** *  **  **   *   *  *

consensus_263#0      AGAAAGAAAAAAGGAATGAAAAAAAAGAATGTCGAAGNGGGTCGAACTTGAATCGAATCC 414
consensus_263#1      AAAGTGAATATCGGAATTAAAAGAAA--ATAGAGAACAGAGA-AAATATGTACTGAA--- 380
                     * *  *** *  ***** **** ***  **   ***  * *   **  ** *  ***   

consensus_263#0      CTCGAAGAGAACAAGAACACAGGTAAACGAGNGGAGACGTAGATCTCGCCGGTCGCGACC 474
consensus_263#1      ----AAGAAAAAGAAAAAAAAAAGAAAGAAAGAAAGAAAGAAAAAAAACCGAGCG-GAAG 435
                         **** **  * ** * *   ***  *    ***   * *     ***  ** **  

consensus_263#0      TNGACGCGTTGCAACGACGTCCGTCGAT-CGATATCCCATCGATCGATCTCTCTATCCTG 533
consensus_263#1      TGTACGCGTGTGAGCGTAACCAGGCAACGCGATGTTCGAAAAGAAAAACA---------A 486
                     *  ******   * **    * * * *  **** * * *       * *           

consensus_263#0      CTTTCGTCATTGTTAACCTTAAATCCTTTTTCCATAATTTTGCCCTGTCCCATAATATGC 593
consensus_263#1      ATTTGGCCACGTTGCGGGTTGAACAGCGAGCGCAAAAAGCGATCGTGTACGATCCTCTGT 546
                      *** * **   *     ** **         ** **      * *** * **  * ** 

consensus_263#0      CCTGTATCCTTGTCCTTGTTTCCTCAACGACTGACGATTCCCTCCTTCCCCCTTTGAAAA 653
consensus_263#1      AATGTTGATGCGTTCCCGTT----CGATGGCCTGGAAT---------------------- 580
                       ***      ** *  ***    * * * *     **                      

consensus_263#0      CCCAGTGAATTTTGTACCGAAATGCGAAACTTGGAAAAGCTACTTTCATATACGGAATTT 713
consensus_263#1      ------------------------------------------------------------
                                                                                 

consensus_263#0      AATTTTTTCACGAAACATGT 733
consensus_263#1      --------------------
                                         




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)