These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_263#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 733 fasta sequence [TTGGCCGCGTTGCGGTTGAACAGCGAGCGCAAAAAGCGATCGTGTACGATCCTCTGTAATGTTGATGCGTTCCCGTTTCGATGGCCTGGAATTAATAATTATATATAGTCGAGTGAGTTAAAAATCGTTAAAAACTCGACGATTCTCGGTACTCTCGTCCCG-TTTTTTTCTCGAGGC-GCGAGACACGTTTTATCACGTTGGAGGGAGAGACGAGAGACGAGAGGATCGTGTGACAATTC-GCGTACCACTCGTTGCGACAGTCAATTAGTTTTAAATTC-AGCTTTTCGCGAGGAGCGATCGCAATGATGCACGAGCAATGAGCCTGTCCCCAAGGATCGAGGGACAGAGAAGGAGAGAAAGAAAAAAGGAATGAAAAAAAAGAATGTCGAAGNGGGTCGAACTTGAATCGAATCCCTCGAAGAGAACAAGAACACAGGTAAACGAGNGGAGACGTAGATCTCGCCGGTCGCGACCTNGACGCGTTGCAACGACGTCCGTCGATCGATATCCCATCGATCGATCTCTCTATCCTGCTTTCGTCATTGTTAACCTTAAATCCTTTTTCCATAATTTTGCCCTGTCCCATAATATGCCCTGTATCCTTGTCCTTGTTTCCTCAACGACTGACGATTCCCTCCTTCCCCCTTTGAAAACCCAGTGAATTTTGTACCGAAATGCGAAACTTGGAAAAGCTACTTTCATATACGGAATTTAATTTTTTCACGAAACATGT] [+] EMBL BI515845 [TTGGCCGCGTTGCTGTTGAACAGCGAGCGCAAAAAGCGATCGTGTACGATCCTCTGTAATGTTGATGCGTTCCCGTTTCGATGGCCTGGAATTAATAATTATATATAGTCGAGTGAGTTAAAAATCGTTAAAAACTCGACGATTCTCGGTACTCTCGTCCCG TTTTTTTCTCGAGGC GCGAGACACGTTTTATCACGTTGGAGGGAGAGACGAGAGANNNGAGGATCGTGTGACAATTC GCGTACCACTCGTTGCGACAGTCAATTAGTTTTAAATTC AGCTTTTCGCGAGGAGCGATCGCAATGATGCACGAGCAATGAGCCTGTCCCCAAGGATCGAGGGACAGAGAAGGAGAGAAAGAAAAAAGGAATGAAAAAAAAGAATGTCGAAGAGGGTCGAACTTGAATCGAATCCCTCGAAGAGAACAAGAACACAGGTAAACGAGAGGAGACGTAG ] [+] EMBL BI513737 [ TGCGGTTGAACAGCGAGCGCAAAAAGCGATCGTGTACGATCCTCTGTAATGTTGATGCGTTCCCGTTTCGATGGCCTGGAATTAATAATTATATATAGTCGAGTGAGTTAAAAATCGTTAAAAACTCGACGATTCTCGGTACTCTCGTCCCG TTTTTTTCTCGAGGC GCGAGACACGTTTTATCACGTTGGAGGGAGAGACGAGAGACGAGAGGATCGTGTGACAATTC GCGTACCACTCGTTGCGACAGTCAATTAGTTTTAAATTC AGCTTTTCGCGAGGAGCGATCGCAATGATGCACGAGCAATGAGCCTGTCCCCAAGGATCGAGGGACAGAGAAGGAGAGAAAGAAAAAAGGAATGAAAAAAAAGAATGTCGAAGNGGGTCGAACTTGAATCGAATCCCTCGAAGAGAACAAGAACACAGGTAAACGAGNGGAGACGTAGATCTCGCCGGTCGCGACCTNGACGCGTTGCAACGACGTCCGTCGATCGATATCCCATCGATCGATCTCTCTATCCTGCTTTCCTCATTCTTA ] [+] EMBL BI515940 [ GAGCGCAAAAAGCGATCGTGTACGATCCTCTGTAATGTTGATGCGTTCCCGTTTCGATGGCCTGGAATTAATAATTATATATAGTCGAGTGAGTTAAAAATCGTTAAAAACTCGACGATTCTCGGTACTCTCGTCCCG TTTTTTTCTCGAGGC GCGAGACACGTTTTATCACGTTGGAGGGAGAGACGAGAGACGAGAGGATCGTGTGACAATTC GCGTACCACTCGTTGCGACAGTCAATTAGTTTTAAATTC AGCTTTTCGCGAGGAGCGATCGCAATGATGCACGAGCAATGAGCCTGTCCCCAAGGATCGAGGGACAGAGAAGGAGAGAAAGAAAAAAGGAATGAAAAAAAAGAATGTCGAAGNGGGTCGAACTTGAATCGAATCCCTCGAAGAGAACAAGAACACAGGTAAACGAGNGGAGACGTAGATCTCGCCGGTCGCGACCTNNACGCGTTGCAACGACGTCCGTCGATCGATATCCCATCGATCGATCTCTCTATCCT ] [-] EMBL BE844472 [ ttaaAAAACTTGGAGGATTCTCGGTATTCTTGTCCCGTTTTTTTTCTGGAGGCGGCGAGACACGTTTTATCACGTTGGAGGGAGAGACGAGAGACGAGAGGATCGTGTGACAATTCGGGGTACCACTCGTTGCGACAGTCAATTAGTTTTAAATTCAAGCTTTTCGCGAGGAGCGATCGCAATGATGCACGAGCAATGAGCCTGTCCCCAAGGATCGAGGGACAGAGAAGGAGAGAAAGAAAAAAGGAATGAAAAAAAAGAATGTCGAAGAGGGTCGAACTTGAATCGAATCCCTCGAAGAGAACAAGAACACAGGTAAACGAGAGGAGACGTAGATCTCGCCGGTCGCGACCTGGACGCGTTGCAACGACGTCCGTCGATCGATATCCCATCGATCGATGTGTGTATCCTGCTTTCGTCATTGTTAACCTTAAATCCTTTTTCCATAATTTTGCCCTGTCCCATAATATGCCCTGTATCCTTGTCCTTGTTTCCTCAACGACTGACGATTCCCTCCTTCCCCCTTTGAAAACCCAGTGAATTTTGTACCGAAATGCGAAACTTGGAAAAGCTACTTTCATATACGGAATTTAATTTTTTCACGAAACATGT] consensusID : consensus_263#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence [GAGAGAGAGTGTGTGCGTGTGCGTATGTTGAGAAATATAATGCATCAAATATGAAACATTTATCGCCTGATCTCGTGTTCCTCCGCAGTCGATTGAAAATAAAAGAAAGTGAGTATGAGGGAAGAGATATGGTATAGCGTGCCGGTTCATAAACGAGGTTCGTCGTCTCGTAAGTTCTTCTTCGATCAGCGACGGAAAGGAAGAAAATGGATTAGGAGAGGAAAGCGTGTGAGACGAGAACCGCGCGCGTAATTTGACAAAAAGAACGTTAATATAATTATGTACGAGGGGGGGGAAAAAAAAAGAAAAGAACGATGCATGTGTTGAAAGTGAATATCGGAATTAAAAGAAAATAGAGAACAGAGAAAATATGTACTGAAAAGAAAAAGAAAAAAAAAAGAAAGAAAGAAAGAAAGAAAAAAAACCGAGCGGAAGTGTACGCGTGTGAGCGTAACCAGGCAACGCGATGTTCGAAAAGAAAAACAAATTTGGCCACGTTGCGGGTTGAACAGCGAGCGCAAAAAGCGATCGTGTACGATCCTCTGTAATGTTGATGCGTTCCCGTTCGATGGCCTGGAAT] [+] EMBL BE844473 [GAGAGAGAGTGTGTGCGTGTGCGTATGTTGAGAAATATAATGCATCAAATATGAAACATTTATCGCCTGATCTCGTGTTCCTCCGCAGTCGATTGAAAATAAAAGAAAGTGAGTATGAGGGAAGAGATATGGTATAGCGTGCCGGTTCATAAACGAGGTTCGTCGTCTCGTAAGTTCTTCTTCGATCAGCGACGGAAAGGAAGAAAATGGATTAGGAGAGGAAAGCGTGTGAGACGAGAACCGCGCGCGTAATTTGACAAAAAGAACGTTAATATAATTATGTACGAGGGGGGGGAAAAAAAAAGAAAAGAACGATGCATGTGTTGAAAGTGAATATCGGAATTAAAAGAAAATAGAGAACAGAGAAAATATGTACTGAAAAGAAAAAGAAAAAAAAAAGAAAGAAAGAAAGAAAGAAAAAAAACCGAGCGGAAGTGTACGCGTGTGAGCGTAACCAGGCAACGCGATGTTCGAAAAGAAAAACAAATTTGGCCACGTTGCGGGTTGAACAGCGAGCGCAAAAAGCGATCGTGTACGATCCTCTGTAATGTTGATGCGTTCCCGTTCGATGGCCTGGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_263#0 TTGGCCGCGTTGCGGTTGAACAGCGAGCGCAAAAAGCGATCGTGTACGATCCTCTGTAAT 60 consensus_263#1 ------------------GAGAGAGAGTGTGTGC-GTGTGCGTATGTTGAGAAATATAAT 41 * ** *** * * * *** * * **** consensus_263#0 GTTGATGCGTTCCCGTTTCGATGGCCTGGAATTAATAATTATATATAGTCGAGTGAGT-T 119 consensus_263#1 GCATCAAATATGAAACATTTATCGCCTG-ATCTCGTGTTCCTCCGCAGTCGATTGAAAAT 100 * * * ** ***** * * * * * ****** *** * consensus_263#0 AAAAATCGTTAAAAACTCG--ACGATTCTCGGTACTCTCGTCCCGTTTTTTTCTCGAGGC 177 consensus_263#1 AAAAGAAAGTGAGTATGAGGGAAGAGATATGGTA-TAGCGTGCCGGTTCATAAACGAGGT 159 **** * * * * * ** **** * *** *** ** * ***** consensus_263#0 GCGA-GACACGTTTTATCACGTTGGAGGGAGAGACGAGAGACGAGAGGATCGTGTGACAA 236 consensus_263#1 TCGTCGTCTCGTAAGTTCTTCTTCGATC-AGCGACGGAAAGGAAGAAAATGGATTAGGAG 218 ** * * *** ** ** ** ** **** * *** ** * * * consensus_263#0 TTCGCGTACCACTCGTTGCGACAGTCAATTAGTTTTAAATTCAGCTTTTCGCGAGGAGCG 296 consensus_263#1 A--GGAAAGCGTGTGAGACGAGAACCG--------CGCGCGTAATTTGACAAAAAGAACG 268 * * * * *** * * * ** * * ** ** consensus_263#0 AT--CGCAATGATGCACGAGCAATGAGCCTGTCCCCAAGGATCGAGGGACAGAGAAGGAG 354 consensus_263#1 TTAATATAATTATGTACGAGGGGGGGGAAAAAAA--AAGAAAAGAACGATGCATGTGTTG 326 * *** *** ***** * * *** * ** ** * * * consensus_263#0 AGAAAGAAAAAAGGAATGAAAAAAAAGAATGTCGAAGNGGGTCGAACTTGAATCGAATCC 414 consensus_263#1 AAAGTGAATATCGGAATTAAAAGAAA--ATAGAGAACAGAGA-AAATATGTACTGAA--- 380 * * *** * ***** **** *** ** *** * * ** ** * *** consensus_263#0 CTCGAAGAGAACAAGAACACAGGTAAACGAGNGGAGACGTAGATCTCGCCGGTCGCGACC 474 consensus_263#1 ----AAGAAAAAGAAAAAAAAAAGAAAGAAAGAAAGAAAGAAAAAAAACCGAGCG-GAAG 435 **** ** * ** * * *** * *** * * *** ** ** consensus_263#0 TNGACGCGTTGCAACGACGTCCGTCGAT-CGATATCCCATCGATCGATCTCTCTATCCTG 533 consensus_263#1 TGTACGCGTGTGAGCGTAACCAGGCAACGCGATGTTCGAAAAGAAAAACA---------A 486 * ****** * ** * * * * **** * * * * * consensus_263#0 CTTTCGTCATTGTTAACCTTAAATCCTTTTTCCATAATTTTGCCCTGTCCCATAATATGC 593 consensus_263#1 ATTTGGCCACGTTGCGGGTTGAACAGCGAGCGCAAAAAGCGATCGTGTACGATCCTCTGT 546 *** * ** * ** ** ** ** * *** * ** * ** consensus_263#0 CCTGTATCCTTGTCCTTGTTTCCTCAACGACTGACGATTCCCTCCTTCCCCCTTTGAAAA 653 consensus_263#1 AATGTTGATGCGTTCCCGTT----CGATGGCCTGGAAT---------------------- 580 *** ** * *** * * * * ** consensus_263#0 CCCAGTGAATTTTGTACCGAAATGCGAAACTTGGAAAAGCTACTTTCATATACGGAATTT 713 consensus_263#1 ------------------------------------------------------------ consensus_263#0 AATTTTTTCACGAAACATGT 733 consensus_263#1 -------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |