These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_269#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 509 fasta sequence [CGAAAATGTCACGTTATCGTGAATGGGATCTTTCATGTAAAGTTTATGTCGGTAATTTAGGAAATAGTGCTAGTAAACATGAAATTGAAAGTGCATTTAGTAAATATGGTCCACTTAGAAATGTGTGGGTTGCTAGAAATCCACCGGGATTTGCTTTTGTAGAATTTGAAGATCCACGAGATGCAGAAGATGCAGTTAGGGGATTAGATGGAACACGCTGTTGTGGAACTAGAGTAAGAGTAGAAATGTCTTCAGGAAGAAGCAGACGTGGAGGTGGTGGACGAAGACCAGGTCCAAGATATTCCAGGTCCAGATCTCGCAGTCCTCGAAGGAGATCATTGGGTCGTTATCCAAGGTCAAGATCCCGTAGCCCGCGCAGAAGATCTTTAACCCGTAGTCGCAGCCGAGATCGTCGTTCTCGTTCGGATTCCCGTGACAGACGTTAGATGCTAAAAGTATTCCAGACAATGGATCTACTAAATATGGCAGAAAGAAGATAAAAGAAAAAT] [+] EMBL BI512618 [CGAAAATGTCACGTTATCGTGAATGGGATCTTTCATGTAAAGTTTATGTCGGTAATTTAGGAAATAGTGCTAGTAAACATGAAATTGAAAGTGCATTTAGTAAATATGGTCCACTTAGAAATGTGTGGGTTGCTAGAAATCCACCGGGATTTGCTTTTGTAGAATTTGAAGATCCACGAGATGCAGAAGATGCAGTTAGGGGATTAGATGGAACACGCTGTTGTGGAACTAGAGTAAGAGTAGAAATGTCTTCAGGAAGAAGCAGACGTGGAGGTGGTGGACGAAGACCAGGTCCAAGATATTCCAGGTCCAGATCTCGCAGTCCTCGAAGGAGATCATTGGGTCGTTATCCAAGGTCAAGATCCCGTAGCCCGCGCAGAAGATCTTTAACCCGTAGTCGCAGCCGAGATCGTCGTTCTCGTTCGGATTCCCGTGACAGACGTTAGATGCTAAAAGTATTCCAGACAATGGATCTACTAAATATGGCAGAAAGAAGATAAAAGAAAAAT] consensusID : consensus_269#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 486 fasta sequence [GATCTCTGACCCGTAGCCGCAGCCGAGACCGCCGTTCTCGTTCGGATTCCCGTGACAGACGTTAGGTGCTAAAAGTGTTCGAGAGAATGGACCGACTAAATGTGGCGGAAAGAAGGCAAAAGAAAACTGATTTTATATGTACATAAAAAAAGATAATCGTTACTACACATACATATTCGGTCGAAATAATGATTATAGTAAAAGAAAAAGACATTTATAAGAGATACAAAAATAACATGTACACGATGTTTAATATTTAAATTGTTAATTTTGTGCACACAAAGCGTGTATAAAAATTAAACACATACACACAAAAAAGTGCTTGTGAATGACCACACATGCACAATTTCATACATACACATATACACATATAATACATATATTATGTACAGACGCATTTTACACACATACAAAATTTTTGTGATGTAAACTATCGAGTGCAGTGGATCTTTTAACAAGATGTGCTCATTGCTTTAAAGTGTACGA] [+] EMBL BI510693 [GATCTCTGACCCGTAGCCGCAGCCGAGACCGCCGTTCTCGTTCGGATTCCCGTGACAGACGTTAGGTGCTAAAAGTGTTCGAGAGAATGGACCGACTAAATGTGGCGGAAAGAAGGCAAAAGAAAACTGATTTTATATGTACATAAAAAAAGATAATCGTTACTACACATACATATTCGGTCGAAATAATGATTATAGTAAAAGAAAAAGACATTTATAAGAGATACAAAAATAACATGTACACGATGTTTAATATTTAAATTGTTAATTTTGTGCACACAAAGCGTGTATAAAAATTAAACACATACACACAAAAAAGTGCTTGTGAATGACCACACATGCACAATTTCATACATACACATATACACATATAATACATATATTATGTACAGACGCATTTTACACACATACAAAATTTTTGTGATGTAAACTATCGAGTGCAGTGGATCTTTTAACAAGATGTGCTCATTGCTTTAAAGTGTACGA] consensusID : consensus_269#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence [CGTGTAAAGTTTATGTTGGTAATCTAGGAAATAGTGCTAGTAAACATGAAATTGAAAGTGCATTCAGTAAATATGGTCCACTTAGAAATGTGTGGGTAGCTAGAAATCCACCTGGATTTGCTTTTGTGGAATTTGAAGATCCACGAGACGCAGAAGATGCAGTTAGAGGATTAGATGGAACACGCTGTTGTGGAACTAGAGTAAGAGTAGAGATGTCTTCAGGAAGAAGTAGACGTGCAAGTGGTGGACGGAGACCAGGTCCAAGATACTCCAGGTAAGAAATCTTAGTGTTAAATATTAATATTTTACAGCAACATTTGAGCTGCTGCAGATGGCTAAGTGTCTTATCAAGTAGGTATTATAGTGCAGTTATCAAATAAGGATGTCAAGAAACGATGCACGGGTTTCGGTGAATTTTTTTATGCACAAAAGATATTTTTTAAAATTATTTTATATAAGAATGCAGATAGAATATATATAT] [+] EMBL BI511226 [CGTGTAAAGTTTATGTTGGTAATCTAGGAAATAGTGCTAGTAAACATGAAATTGAAAGTGCATTCAGTAAATATGGTCCACTTAGAAATGTGTGGGTAGCTAGAAATCCACCTGGATTTGCTTTTGTGGAATTTGAAGATCCACGAGACGCAGAAGATGCAGTTAGAGGATTAGATGGAACACGCTGTTGTGGAACTAGAGTAAGAGTAGAGATGTCTTCAGGAAGAAGTAGACGTGCAAGTGGTGGACGGAGACCAGGTCCAAGATACTCCAGGTAAGAAATCTTAGTGTTAAATATTAATATTTTACAGCAACATTTGAGCTGCTGCAGATGGCTAAGTGTCTTATCAAGTAGGTATTATAGTGCAGTTATCAAATAAGGATGTCAAGAAACGATGCACGGGTTTCGGTGAATTTTTTTATGCACAAAAGATATTTTTTAAAATTATTTTATATAAGAATGCAGATAGAATATATATAT] consensusID : consensus_269#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 435 fasta sequence [TTTTTTTTTAATAAATCAATTCATTTAAAAACACGCAAAATGTCACGTTATCGTGAATGGGATCTTTCGTGTAAAGTTTATGTTGGTAATCTAGGAAATAGTGCTAGTAAACATGAAATTGAAAGTGCATTCAGTAAATATGGTCCACTTAGAAATGTGTGGGTAGCTAGAAATCCACCTGGATTTGCTTTTGTGGAATTTGAAGATCCACGAGACGCAGAAGATGCAGTTAGAGGATTAGATGGAACACGCTGTTGTGGAACTAGAGTAAGAGTAGAGATGTCTTCAGGAAGAAGTAGACGTGCAAGTGGTGGACGGAGACCAGGTCCAAGATACTCCAGGTCAAGGTCCCGTAGCCCGCGCAGGAGATCTCTGACCCGTAGCCGCAGCCGAGNCCGCCGTTCTCGTTCGGATTCCCGTGACAGACGTTAGGTG] [+] EMBL BI510982 [TTTTTTTTTAATAAATCAATTCATTTAAAAACACGCAAAATGTCACGTTATCGTGAATGGGATCTTTCGTGTAAAGTTTATGTTGGTAATCTAGGAAATAGTGCTAGTAAACATGAAATTGAAAGTGCATTCAGTAAATATGGTCCACTTAGAAATGTGTGGGTAGCTAGAAATCCACCTGGATTTGCTTTTGTGGAATTTGAAGATCCACGAGACGCAGAAGATGCAGTTAGAGGATTAGATGGAACACGCTGTTGTGGAACTAGAGTAAGAGTAGAGATGTCTTCAGGAAGAAGTAGACGTGCAAGTGGTGGACGGAGACCAGGTCCAAGATACTCCAGGTCAAGGTCCCGTAGCCCGCGCAGGAGATCTCTGACCCGTAGCCGCAGCCGAGNCCGCCGTTCTCGTTCGGATTCCCGTGACAGACGTTAGGTG] consensusID : consensus_269#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 311 fasta sequence [TAGAAATGTGTGGGTAGCTAGAAATCCACCTGGATTTGCTTTTGTGGAATTTGAAGATCCACGAGACGCAGAAGATGCAGTTAGAGGATTAGATGGAACACGCTGTTGTGGAACTAGAGTAAGAGTAGAGATGTCTTCAGGAAGAAGTAGACGTGCAAGTGGTGGACGGAGACCAGGTCCAAGATACTCCAGATTCTACCAGCGTCAGCTCCTAGCTCTGCTCGTCTCCCCGCCACTACTACTACTGCTACTACTACTACTACTACAGCCACCGTGAAAAAAAGTCTAGCAATCAAAACTGAACAAAAAAA] [+] EMBL BI506254 [TAGAAATGTGTGGGTAGCTAGAAATCCACCTGGATTTGCTTTTGTGGAATTTGAAGATCCACGAGACGCAGAAGATGCAGTTAGAGGATTAGATGGAACACGCTGTTGTGGAACTAGAGTAAGAGTAGAGATGTCTTCAGGAAGAAGTAGACGTGCAAGTGGTGGACGGAGACCAGGTCCAAGATACTCCAGATTCTACCAGCGTCAGCTCCTAGCTCTGCTCGTCTCCCCGCCACTACTACTACTGCTACTACTACTACTACTACAGCCACCGTGAAAAAAAGTCTAGCAATCAAAACTGAACAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_269#0 ---------------------------------CG-AAAATGTCACGTTATCGTGAATGG 26 consensus_269#3 TTTTTTTTTAATAAATCAATTCATTTAAAAACACGCAAAATGTCACGTTATCGTGAATGG 60 consensus_269#2 ------------------------------------------------------------ consensus_269#4 ------------------------------------------------------------ consensus_269#1 ----------------GATCTCTGACCCGTAGCCGCAGCCGAGACCGCCGTTCTCGTTCG 44 consensus_269#0 GATCTTTCATGTAAAGTTTATGTC-----GGTAATTTAGGAAATAGTGCTAGTAAACATG 81 consensus_269#3 GATCTTTCGTGTAAAGTTTATGTT-----GGTAATCTAGGAAATAGTGCTAGTAAACATG 115 consensus_269#2 -------CGTGTAAAGTTTATGTT-----GGTAATCTAGGAAATAGTGCTAGTAAACATG 48 consensus_269#4 ------------------------------------------------------------ consensus_269#1 GATTCCCGTGACAGACGTTAGGTGCTAAAAGTGTTCGAGAGAATGGACCGACTAAATGTG 104 consensus_269#0 AAATTGAAAGTGCATTTAGTAAAT-ATGGTCCACTTAGAAATGTGTGGGTTGCTAGAAAT 140 consensus_269#3 AAATTGAAAGTGCATTCAGTAAAT-ATGGTCCACTTAGAAATGTGTGGGTAGCTAGAAAT 174 consensus_269#2 AAATTGAAAGTGCATTCAGTAAAT-ATGGTCCACTTAGAAATGTGTGGGTAGCTAGAAAT 107 consensus_269#4 -----------------------------------TAGAAATGTGTGGGTAGCTAGAAAT 25 consensus_269#1 GCGGAAAGAAGGCAAAAGAAAACTGATTTTATATGTACATAAAAAAAGATAATCGTTACT 164 ** * * * * * * consensus_269#0 CCACCGGGATTTGCTTTTGTAGAATTTGAAGATCCACGAGATGCAGAAGATGCAGTTAGG 200 consensus_269#3 CCACCTGGATTTGCTTTTGTGGAATTTGAAGATCCACGAGACGCAGAAGATGCAGTTAGA 234 consensus_269#2 CCACCTGGATTTGCTTTTGTGGAATTTGAAGATCCACGAGACGCAGAAGATGCAGTTAGA 167 consensus_269#4 CCACCTGGATTTGCTTTTGTGGAATTTGAAGATCCACGAGACGCAGAAGATGCAGTTAGA 85 consensus_269#1 ACACATACATAT---TCGGTCGAAATAATGATTATAGTAAAAGAAAAAGACATTTATAAG 221 *** ** * * ** *** * * * * * * * **** ** consensus_269#0 GGAT-TAGATGGAACACGCTGTTGTGGAACTAGAGTAAGAGTAGAAATGTCTTCAGGAAG 259 consensus_269#3 GGAT-TAGATGGAACACGCTGTTGTGGAACTAGAGTAAGAGTAGAGATGTCTTCAGGAAG 293 consensus_269#2 GGAT-TAGATGGAACACGCTGTTGTGGAACTAGAGTAAGAGTAGAGATGTCTTCAGGAAG 226 consensus_269#4 GGAT-TAGATGGAACACGCTGTTGTGGAACTAGAGTAAGAGTAGAGATGTCTTCAGGAAG 144 consensus_269#1 AGATACAAAAATAACATGTACACGATGTTTAATATTTAAATTGTTAATTTTGTGCACACA 281 *** * * **** * * * * * * * * * ** * * * consensus_269#0 AAGCAGACGTGGAGGTGGTGGACGAAGACCAGGTCCAAGATATTCCAGGTCCAGATCTCG 319 consensus_269#3 AAGTAGACGTGCAAGTGGTGGACGGAGACCAGGTCCAAGATACTCCAGGTC--------- 344 consensus_269#2 AAGTAGACGTGCAAGTGGTGGACGGAGACCAGGTCCAAGATACTCCAGGTAAGA--AATC 284 consensus_269#4 AAGTAGACGTGCAAGTGGTGGACGGAGACCAGGTCCAAGATACTCCAGATTCTACCAGCG 204 consensus_269#1 AAGCGTGTATAAAAAT--TAAACACATACACACAAAAAAGTGCTTGTGAATGACCACACA 339 *** * * * * ** * ** ** * * * consensus_269#0 CAGTCCTCGAAGGAGATCATTGGGTCGTTATCCAAGGTCAAGATCCCGTA-GCCCGCGCA 378 consensus_269#3 ---------------------------------------AAGGTCCCGTA-GCCCGCGCA 364 consensus_269#2 TTAGTGTTAAATATTAATATTTTACAG----CAACATTTGAGCTGCTGCA-GATGGC-TA 338 consensus_269#4 TCAGCTCCTAGCTCTGCTCGTCTCCC-----CGCCACTACTACTACTGCT-ACTACTACT 258 consensus_269#1 TGCACAATTTCATACATACACATATACACATATAATACATATATTATGTACAGACGCATT 399 * * consensus_269#0 GAAGATCTTTAACCCGTAGTCGCAGCCGAGATCGTCGTTCTCGTTCGGA-TTCCCGTGAC 437 consensus_269#3 GGAGATCTCTGACCCGTAGCCGCAGCCGAGNCCGCCGTTCTCGTTCGGA-TTCCCGTGAC 423 consensus_269#2 AGTG--TCTTATCAAGTAG--GTATTATAGTGCAGTTATCAAATAAGGA-TGTCAAGAAA 393 consensus_269#4 ACTA--CTACAGCCACCGT--GAAAAAAAGTCTAGCAATCAAAACTGAA-CAAAAAAA-- 311 consensus_269#1 TTACACACATACAAAATTTTTGTGATGTAAACTATCGAGTGCAGTGGATCTTTTAACAAG 459 * * * consensus_269#0 AGACGTTAGATGCTAAAAGTATTCCAGACAATGGATCTACTAAATATGGCAGAAAGAAGA 497 consensus_269#3 AGACGTTAGGTG------------------------------------------------ 435 consensus_269#2 CGATGCACGGGTTTCGGTGAATTTTTTTATGCACAAAAGATATTTTTTAAAATTATTTTA 453 consensus_269#4 ------------------------------------------------------------ consensus_269#1 ATGTGCTCATTGCTTTAAAGTGTACGA--------------------------------- 486 consensus_269#0 TAAAAGAAAAAT---------------- 509 consensus_269#3 ---------------------------- consensus_269#2 TATAAGAATGCAGATAGAATATATATAT 481 consensus_269#4 ---------------------------- consensus_269#1 ---------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |