These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2837#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 641 fasta sequence [CGCATTATGTTGTGCAACATCAGCAAGTATTATATTTTATGTGCATTATCAACAAGAAGCTGAGAGAAAACAGCTTGAGATAGGTGTAGAACGCGATATTCAACGACAAGAACGGAATAAATTAAAATCGTTGTTGAAACAACAAACACAGTTGACGGATCAGTTGCGAGAATCGTCAAAAAACGAACAAAATCTTCAAACTTTATAACATTAATTTCGCTGTCGACTTTAGGTTAGGTTAGATTATACAATATCAATGAACATAATGACTACAGAAGAACCAACTGAACCAGATTTGATTTGCGTAGAGGAAAGTCTTATGAGTTTAGAAAAATTAGATAGAGCATCACCAGATTTATGGCCTGAACAAATTCCAGGTGTAAACGAATTTGTAGCTCAAAATTCACCTCAAACAGAACCATCTGCTTGGGCTGCTGGTCTCACTCCAGATGATATAAATCAGTTACATCAATTAGGAAATTTGTCAATGGGTGGTTTAATATCCGAAGTAAAAAAATTACATGACATGGCATATCAATTAGGATTGGAAGANNCAAAAGAGATGACTCGTGGGAAATATTTGAACATTTTCAAGCATAAATAGCAAAAGTTTGATTAAAGATGATTATATAATCCATGTT] [+] EMBL BI509497 [CGCATTATGTTGTGCAACATCAGCAAGTATTATATTTTATGTGCATTATCAACAAGAAGCTGAGAGAAAACAGCTTGAGATAGGTGTAGAACGCGATATTCAACGACAAGAACGGAATAAATTAAAATCGTTGTTGAAACAACAAACACAGTTGACGGATCAGTTGCGAGAATCGTCAAAAAACGAACAAAATCTTCAAACTTTATAACATTAATTTCGCTGTCGACTTTAGGTTAGGTTAGATTATACAATATCAATGAACATAATGACTACAGAAGAACCAACTGAACCAGATTTGATTTGCGTAGAGGAAAGTCTTATGAGTTTAGAAAAATTAGATAGAGCATCACCAGATTTATGGCCTGAACAAATTCCAGGTGTAAACGAATTTGTAGCTCAAAATTCACCTCAAACAGAACCATCTGCTTGGGCTGCTGGTCTCACTCCAGATGATATAAATCAGTTACATCAATTAGGAAATTTGTCAATGGGTGGTTTAATATCCGAAGTAAAAAAATTACATGACATGGCATATCAATTAGGATTGGAAGANNCAAAAGAGATGACTCGTGGGAAATATTTGAACATTTTCAAGCATAAATAGCAAAAGTTTGATTAAAGATGATTATATAATCCATGTT] consensusID : consensus_2837#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 532 fasta sequence [TTTCGCTGTCGACTTTAGGTTAGGTTAGATTATACAATATCAATGAACATAATGACTACAGAAGAACCAACAGAACCAGATTTGATTTGCGTAGAGGAAAGTCTTATGAGTTTAGAAAAATTAGATAGAGCATCACCAGATTTATGGCCTGAACAAAGTAGGTATATTTTATGTATACGTGCTACTCTTATATATATATATATATTAAATTTTGAAAGAAAAAAATAATATATCGTGTAATCATATTAATGATTAATGAAGTTCCAGGTGTAAACGAATTTGTAGCTCAAAATTCACCTCAAACAGAACCATCTGCTTGGGCTGCTGGTCTCACTCCAGATGATATAAATCAGTTACATCAATTAGGAAATTTGTCAATGGGTGGTTTAATATCCGAAGTAAAAAAATTACATGACATGGCATATCAATTAGGATTGGAAGAGGCAAAAGAGATGACTCGTGGAAAATATTTAAACATTTTCAAGCATAAATAGCAAAAGTTTGATTAAAGATGATTATATGTAAGAAAATA] [+] EMBL BI514669 [TTTCGCTGTCGACTTTAGGTTAGGTTAGATTATACAATATCAATGAACATAATGACTACAGAAGAACCAACAGAACCAGATTTGATTTGCGTAGAGGAAAGTCTTATGAGTTTAGAAAAATTAGATAGAGCATCACCAGATTTATGGCCTGAACAAAGTAGGTATATTTTATGTATACGTGCTACTCTTATATATATATATATATTAAATTTTGAAAGAAAAAAATAATATATCGTGTAATCATATTAATGATTAATGAAGTTCCAGGTGTAAACGAATTTGTAGCTCAAAATTCACCTCAAACAGAACCATCTGCTTGGGCTGCTGGTCTCACTCCAGATGATATAAATCAGTTACATCAATTAGGAAATTTGTCAATGGGTGGTTTAATATCCGAAGTAAAAAAATTACATGACATGGCATATCAATTAGGATTGGAAGAGGCAAAAGAGATGACTCGTGGAAAATATTTAAACATTTTCAAGCATAAATAGCAAAAGTTTGATTAAAGATGATTATATGTAAGAAAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2837#0 CGCATTATGTTGTGCAACATCAGCAAGTATTATATTTTATGTGCATTATCAACAAGAAGC 60 consensus_2837#1 ------------------------------------------------------------ consensus_2837#0 TGAGAGAAAACAGCTTGAGATAGGTGTAGAACGCGATATTCAACGACAAGAACGGAATAA 120 consensus_2837#1 ------------------------------TTTCGCTGTCGACT--TTAGGTTAGGTTAG 28 ** * * * ** * ** consensus_2837#0 ATTAAA-ATCGTTGTTGAA-ACAACAAACACAGTTGACGGATCAGTTGCGAGAATCGTCA 178 consensus_2837#1 ATTATACAATATCAATGAACATAATGACTACAGAAGAACCAACAGA-ACCAGATTTGATT 87 **** * * * **** * ** * **** ** * *** * *** * * consensus_2837#0 AAAAACGAACAAAATCTTCAAACTTTATAACATTAATTTCGCTGTCGACTTTAGGTTAGG 238 consensus_2837#1 TGCGTAGAGGAAAGTCTTATGAGTTTAGAAAAATTAGATAG--AGCATCACCAGATTTA- 144 ** *** **** * **** ** * * * * * * * ** ** consensus_2837#0 TTAGATTATACAATATCAATGAACATAATGACTACAGAAGAACCAACTGAACCAGATTTG 298 consensus_2837#1 -TGGCCTGAACAAAGTAGGTATATTTTATGTATACGTGCTACTC-------TTATAT--- 193 * * * **** * * * * *** *** * * * ** consensus_2837#0 ATTTGCGTAGAGGAAAGTCTTATGAGTTTAGAAAAATTAGATAGAGCATCACCAGATTTA 358 consensus_2837#1 ATATATATATATTAAA-TTTTGAAAG---AAAAAAATAATATATCGTGTAATCATATTAA 249 ** * ** * *** * ** ** * ****** * *** * * * ** *** * consensus_2837#0 TGGCCTGAACAAATTCCAGGTGTAAACGAATTTGTAGCTCAAAATTCACCTCAAACAGAA 418 consensus_2837#1 TGAT-TAATGAAGTTCCAGGTGTAAACGAATTTGTAGCTCAAAATTCACCTCAAACAGAA 308 ** * * ** *********************************************** consensus_2837#0 CCATCTGCTTGGGCTGCTGGTCTCACTCCAGATGATATAAATCAGTTACATCAATTAGGA 478 consensus_2837#1 CCATCTGCTTGGGCTGCTGGTCTCACTCCAGATGATATAAATCAGTTACATCAATTAGGA 368 ************************************************************ consensus_2837#0 AATTTGTCAATGGGTGGTTTAATATCCGAAGTAAAAAAATTACATGACATGGCATATCAA 538 consensus_2837#1 AATTTGTCAATGGGTGGTTTAATATCCGAAGTAAAAAAATTACATGACATGGCATATCAA 428 ************************************************************ consensus_2837#0 TTAGGATTGGAAGANNCAAAAGAGATGACTCGTGGGAAATATTTGAACATTTTCAAGCAT 598 consensus_2837#1 TTAGGATTGGAAGAGGCAAAAGAGATGACTCGTGGAAAATATTTAAACATTTTCAAGCAT 488 ************** ******************* ******** *************** consensus_2837#0 AAATAGCAAAAGTTTGATTAAAGATGATTATATAATCCATGTT- 641 consensus_2837#1 AAATAGCAAAAGTTTGATTAAAGATGATTATATGTAAGAAAATA 532 ********************************* * * |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |