These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_29#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1937 fasta sequence [TTGAAACTGTCGTTTGCAAAATATTTGCAGCATCCAAGAACAATGACAACTTGGTTGTTGCTGGTCGTGTGCCTTGGCATAGCTTGTCAAGGTATCACAAGCGTCACTGTTCGAGAAAATTCTCCGAGAAAGTTGGCAAATTCGATGAACGTGATTCACGAATGGAAGTATCTCGATTATGATTTTGGTAGCGACGAAAGGAGGCAAGCTGCGATGCAATCTGGCGAGTATGACCATACGAAAAATTATCCCTTCGATGTCGATCAATGGCGTGGTATGACTTTTGTAACCGTACCAAGATACAAAGGTGTACCTTCTTCTTTGAACGTGATATCTGAGAAAATTGGCAACGGTGGACGACTTCTACAACCGTATCCTGATTGGTCGTGGGCGAACTATAAAGATTGCTCTGGAATAGTGAGCGCTTACAAAATTGCGATCGACAAGTTCGACAGATTGTGGATTCTGGACTCAGGTATTATCAATAATACTCAACCCATGTGTTCACCAAAATTGCATGTCTTTGATCTCAATACCTCACATCAGCTTAAGCAAGTTGTGATGCCGCACGATATTGCCGTAAATGCCAGCACAGGGAATGGGGGACTCGTATCACTAGTTGTTCAAGCTATGGATCCTGTGAATACTATCGTGTATATGGCAGATGACAAAGGTGATGCTTTAATCGTCTACCAAAATTCTGACGAATCTTTCCATCGATTGACTTCCAACACTTTCGATTACGATCCCAAATATATCAAAATGATGGCCGCGGGAGAAAGTTTCACAGCGCAAGATGGAATTTTTGGAATGGCACTCAGTCCCATGACAAACAATCTTTATTACAGCCCTCTTTCTTCTCGCAGTTTGTATTATGTTAATACAAAACCATTCATGAAATCAGAATATGGAGCAAATAACGTACAATATCAAGGTGTCCAAGATATTTTCAACACTGAATCGATTGCTAAAATAATGTCGAAAAATGGCGTTCTCTTTTTCGGCCTCATGAATAATTCAGCTATTGGTTGTTGGAACGAGCATCAACCACTTCAGAGAGAAAATATGGATATGGTCGCTCAGAATGAAGAG-ACTCTTCAAACGGTCGTTGCTATGAAAATGATGCATCTCCCACAATCCAACAAGATGAATAGGATGCATAGGATGAATAGAGTGAATAGAGTGAATAGAATGGATAGAATGGATAGAATAGATAGGATGGATAGGATGGATAGGATGGATACAATGGATACAATGGATAGAATAGATAGGATGGATAGGATGGATAGAATAGATAGGATAGATAGGATGGATACAATGGATACAATGGATACAATGGATAGAACAGATAAGATGAGTAGCATGGATAGGATGGATAGAATGGATAGGGTGGATAGGATGGATACAATGGATAGAACAGATAAGATGAGTAGCATGGATAGGATGGATAGAATGGATAGGGTGGATACAATGGATACAATGGATACAATGGATAGAATGGATAGGATGGATAGGATGGATAGAATGGATAGAATGGATAGGATGGATACAATGGATAGAACAGATAAGATGAGTAGGATAGATAGAATGGATAAAATAGATAGAATGGATAGGATGGATAGGACAAATAGAATGGATAGAATGAATAGGATGAATAGACAAATGAATGAATATATGATGGCTTTAAGTATGAAATTACAGAAATTTATAAATAATGATTATAATTTCAACGAAGTAAACTTCCGAATTTTGGGTGCAAATGTAAACGATTTAATAATGAATACTCGTTGTGCAAATTCTGACAATCAGAATAACAATCAAAATAAGCATAATAATTAAGATGATCGTTCTTTATATTAAAATCTGTTAATCAGTCTTTTCTCGATATAAACCAAATATTCTTTAAAATTTCTTTATATTATAAATGAATAAAATAA] [+] EMBL AF004842 [TTGAAACTGTCGTTTGCAAAATATTTGCAGCATCCAAGAACAATGACAACTTGGTTGTTGCTGGTCGTGTGCCTTGGCATAGCTTGTCAAGGTATCACAAGCGTCACTGTTCGAGAAAATTCTCCGAGAAAGTTGGCAAATTCGATGAACGTGATTCACGAATGGAAGTATCTCGATTATGATTTTGGTAGCGACGAAAGGAGGCAAGCTGCGATGCAATCTGGCGAGTATGACCATACGAAAAATTATCCCTTCGATGTCGATCAATGGCGTGGTATGACTTTTGTAACCGTACCAAGATACAAAGGTGTACCTTCTTCTTTGAACGTGATATCTGAGAAAATTGGCAACGGTGGACGACTTCTACAACCGTATCCTGATTGGTCGTGGGCGAACTATAAAGATTGCTCTGGAATAGTGAGCGCTTACAAAATTGCGATCGACAAGTTCGACAGATTGTGGATTCTGGACTCAGGTATTATCAATAATACTCAACCCATGTGTTCACCAAAATTGCATGTCTTTGATCTCAATACCTCACATCAGCTTAAGCAAGTTGTGATGCCGCACGATATTGCCGTAAATGCCAGCACAGGGAATGGGGGACTCGTATCACTAGTTGTTCAAGCTATGGATCCTGTGAATACTATCGTGTATATGGCAGATGACAAAGGTGATGCTTTAATCGTCTACCAAAATTCTGACGAATCTTTCCATCGATTGACTTCCAACACTTTCGATTACGATCCCAAATATATCAAAATGATGGACGCGGGAGAAAGTTTCACAGCGCAAGATGGAATTTTTGGAATGGCACTCAGTCCCATGACAAACAATCTTTATTACAGCCCTCTTTCTTCTCGCAGTTTGTATTATGTTAATACAAAACCATTCATGAAATCAGAATATGGAGCAAATAACGTACAATATCAAGGTGTCCAAGATATTTTCAACACTGAATCGATTGCTAAAATAATGTCGAAAAATGGCGTTCTCTTTTTCGGCCTCATGAATAATTCAGCTATTGGTTGTTGGAACGAGCATCAACCACTTCAGAGAGAAAATATGGATATGGTCGCTCAGAATGAAGAG ACTCTTCAAACGGTCGTTGCTATGAAAATGATGCATCTCCCACAATCCAACAAGATGAATAGGATGCATAGGATGAATAGAGTGAATAGAGTGAATAGAATGGATAGAATGGATAGAATAGATAGGATGGATAGGATGGATAGGATGGATACAATGGATACAATGGATAGAATAGATAGGATGGATAGGATGGATAGAATAGATAGGATAGATAGGATGCATACAATGGATACAATGGATACAATGGATAGAACAGATAAGATGAGTAGCATGGATAGGATGGATAGAATGGATAGGGTGGATAGGATGGATACAATGGATAGAACAGATAAGATGAGTAGCATGGATAGGATGGATAGAATGGATAGGGTGGATACAATGGATACAATGGATACAATGGATAGAATGGATAGGATGGATAGGATGGATAGAATGGATAGAATGGATAGGATGGATACAATGGATAGAACAGATAAGATGAGTAGGATAGATAGAATGGATAAAATAGATAGAATGGATAGGATGGATAGGACAAATAGAATGGATAGAATGAATAGGATGAATAGACAAATGAATGAATATATGATGGCTTTAAGTATGAAATTACAGAAATTTATAAATAATGATTATAATTTCAACGAAGTAAACTTCCGAATTTTGGGTGCAAATGTAAACGATTTAATAATGAATACTCGTTGTGCAAATTCTGACAATCAGAATAACAATCAAAATAAGCATAATAATTAAGATGATCGTTCTTTATATTAAAATCTGTTAATCAGTCTTTTCTCGATATAAACCAAATATTCTTTAAAATTTCTTTATATTATAAATGAATAAAATAA] [+] EMBL BI502823 [ ATTGACTTCCAACACTTTCGATTACGATCCCAAATATATCAAAATGATGGCCGCGGGAGAAAGTTTCACAGCGCAAGATGGAATTTTTGGAATGGCACTCAGTCCCATGACAAACAATCTTTATTACAGCCCTCTTTCTTCTCGCAGTTTGTATTATGTTAATACAAAACCATTCATGAAATCAGAATATGGAGCAAATAACGTACAATATCAAGGTGTCCAAGATATTTTCAACACTGAATCGATTGCTAAAATAATGTCGAAAAATGGCGTTCTCTTTTTCGGCCTCATGAA ] [+] EMBL BI504840 [ CGATCCCAAATATATCAAAATGATGGCCGCGGGAGAAAGTTTCACAGCGCAAGATGGAATTTTTGGAATGGCACTCAGTCCCATGACAAACAATCTTTATTACAGCCCTCTTTTTTCTCGCAGTTTGTATTATGTTAATACAAAACCATTCATGAAATCAGAATATGGAGCAAATAACGTACAATATCAAGGTGTCCAAGATATTTTCAACACTGAATCGATTGCTAAAATAATGTCGAAAAATGGCGTTCTCTTTTTCGGCCTCATGAATAATTCAGCTATTGGTTGTTGGAACGAGCATCAACCACTTCAGAGAGAAAATATGGATATGGTCGCTCAGAATGAAGAG ACTCTTCAAACGGTCGTTGCTATGAAAATGATGCATCTCCCACAATCCAACAAGATGAATAGGATGCATAGGATGAATAGAGTGAATAGAGTGAATAGAA ] [+] EMBL BI503419 [ AAAATGATGGCCGCGGGAGAAAGTTTCACAGCGCAAGATGGAATTTTTGGAATGGCACTCAGTCCCATGACAAACAATCTTTATTACAGCCCTCTTTCTTCTCGCAGTTTGTATTATGTTAATACAAAACCATTCATGAAATCAGAATATGGAGCAAATAACGTACAATATCAAGGTGTCCAAGATATTTTCAACACTGAATCGATTGCTAAAATAATGTCGAAAAATGGCGTTCTCTTTTTCGGCCTCATGAATAATTCAGCTATTGGTTGTTGGAACGAGCATCAACCACTTCAGAGAGAAAATATGGATATGGTCGCTCAGAATGAAGAG ACTCTTCAAACGGTCGTTGCTATGAAAATGATGCATCTCCCACAATCCAACAAGATGAATAGGATGCATAGGATGAATAGAGTGAATAGAGTGAATAGAA ] [+] EMBL BI509613 [ AAATGATGGCCGCGGGAGAAAGTTTCACAGCGCAAGATGGAATTTTTGGAATGGCACTCAGTCCCATGACAAACAATCTTTATTACAGCCCTCTTTCTTCTCGCAGTTTGTATTATGTTAATACAAAACCATTCATGAAATCAGAATATGGAGCAAATAACGTACAATATCAAGGTGTCCAAGATATTTTCAACACTGAATCGATTGCTAAAATAATGTCGAAAAATGGCGTTCTCTTTTTCGGCCTCATGAATAATTCAGCTATTGGTTGTTGGAACGAGCATCAACCACTTCAGAGAGAAAATATGGATATGGTCGCTCAGAATGAAGAG ACTCTTCAAACGGTCGTTGCTATGAAAATGATGCATCTCCCACAATCCAACAAGATGAATAGGATGCATAGGATGAATAGAGTGAATAGAGTGAATAGAA ] [+] EMBL BI504459 [ GCAAGATGGAATTTTTGGAATGGCACTCAGTCCCATGACAAACAATCTTTATTACAGCCCTCTTTCTTCTCGCAGTTTGTATTAT TTAATACAAAACCATTCATGAAATCAGAATATGGAGCAAATAACGTACAATATCAAGGTGTCCAAGATATTTTCAACACTGAATCGATTGCTAAAATAATGTCGAAAAATGGCGTTCTCTTTTTCGGCCTCATGAATAATTCAGCTATTGGTTGTTGGAACGAGCATCAACCACTTCAGAGAGAAAATATGGATATGGTCGCTCAGAATGAAGAG ACTCTTCAAACGGTCGTTGCTATGAAAATGATGCATCTCCCACAATCCAACAAGATGAATAGGATGCATAGGATGAATAGAGTGAATAGAGTGAATAGAATGGATAGAATGGATAGAATAGATAGGATGGATAGGATGGATAGGATGGATACAATGGATACAATGGATAGAATAGATAGGATGGATAGGATGGATAGAATAGATAGGATAGATAGGATGGATACAATGGATACAAT ] [+] EMBL BI506334 [ TGAATCGATTGCTAAAATAATGTCGAAAAATGGCGTTCTCTTTTTCGGCCTCATGAATAATTCAGCTATTGGTTGTTGGAACGAACATCAACCACTTCAGAGAGAAAATATGGATATGGTCGCTCAGAATGAAGAGNNNTCTTCAAACGGTCGTTGCTATGAAAATGATGCATCTCCCACAATCCAACAAGATGAATAGGATGCATAGGATGAATAGAGTGGATAGAATGGATAGGATGGATACAATGGATAGAACAGATAAGATGAGTAGGATAG ] [+] EMBL BI506143 [ GAAAAATGGCGTTCTCTTTTTCGGCCTCATGAATAATTCAGCTATTGGTTGTTGGAACGAGCATCAACCACTTCAGAGAGAAAATATGGATATGGTCGCTCAGAATGAAGAG ACTCTTCAAACGGTCGTTGCTATGAAAATGATGCATCTCCCACAATCCAACAAGATGAATAGGATGCATAGGATGAATAGAGTGAATAGAGTGAATAGAATGGATAGAATGGATAGAATAGATAGGATGGATAGGATGGATAGGATGGATACAATGGATACAATGGATAGAATAGATAGGATGGATAGGATGGATAGAATAGATAGGATAGATAGGATGGATACAATGGATACAATGGATACAATGGATAGAACAGATAAGATGAGTAGCATGGATAGGATGGATAGAATGGATAGGGTGGATAGG ] [+] EMBL BI503650 [ TCTTTTTCGGCCTCATGAATAATTCAGCTATTGGTTGTTGGAACGAGCATCAACCACTTCAGAGAGAAAATATGGATATGGTCGCTCAGAATGAAGAG ACTCTTCAAACGGTCGTTGCTATGAAAATGATGCATCTCCCACAATCCAACAAGATGAATAGGATGCATAGGATGAATAGAGTGAATAGAGTGAATAGAATGGATAGAATGGATAGAATAGATAGGATGGAT ] [+] EMBL BI503388 [ TCTTTTTCGGCCTCATGAATAATTCAGCTATTGGTTGTTGGAACGAGCATCAACCACTTCAGAGAGAAAATATGGATATGGTCGCTCAGAATGAAGAG ACTCTTCAAACGGTCGTTGCTATGAAAATGATGCATCTCCCACAATCCAACAAGATGAATAGGATGCATAGGATGAATAGAGTGAATAGAGTGAATAGAATGGAT ] [+] EMBL BI505710 [ TTGGTTGTTGGAACGAACATCAACCACTTCAGAGAGAAAATATGGATATGGTCGCTCAGAATGAAGAG ACTCTTCAAACGGTCGTTGCTATGAAAATGATGCATCTCCCACAATCCAACAAGATGAATAGGATGCATAGGATGAATAGAGTGAATAGAGTGAATACAATGGATAGAATAGATAGGATGGATAGGATGGATAGAATAGA ] consensusID : consensus_29#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence [AGAATGAAGAGACTCTTCAAACGGTCGTTGCTATGAAAATGATGCATCTCCCACAATCCAACAAGATGAATAGGATGCATAGGATGAATAGAGTGAATAGAGTGAATAGAATGGATAGAATGGATAGAATAGATAGGATGGATACAATGGATACAATGGATACAATGGATAGAACAGATAAGATGAGTAGCATGGATAGGATGGATAGAATGGATAGGGTGGATAGGATGGATACAATGGATAGAACAGATAAGATGAGTAGCATGGATAG] [+] EMBL BI509691 [AGAATGAAGAGACTCTTCAAACGGTCGTTGCTATGAAAATGATGCATCTCCCACAATCCAACAAGATGAATAGGATGCATAGGATGAATAGAGTGAATAGAGTGAATAGAATGGATAGAATGGATAGAATAGATAGGATGGATACAATGGATACAATGGATACAATGGATAGAACAGATAAGATGAGTAGCATGGATAGGATGGATAGAATGGATAGGGTGGATAGGATGGATACAATGGATAGAACAGATAAGATGAGTAGCATGGATAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_29#0 TTGAAACTGTCGTTTGCAAAATATTTGCAGCATCCAAGAACAATGACAACTTGGTTGTTG 60 consensus_29#1 ------------------------------------------------------------ consensus_29#0 CTGGTCGTGTGCCTTGGCATAGCTTGTCAAGGTATCACAAGCGTCACTGTTCGAGAAAAT 120 consensus_29#1 ------------------------------------------------------------ consensus_29#0 TCTCCGAGAAAGTTGGCAAATTCGATGAACGTGATTCACGAATGGAAGTATCTCGATTAT 180 consensus_29#1 ------------------------------------------------------------ consensus_29#0 GATTTTGGTAGCGACGAAAGGAGGCAAGCTGCGATGCAATCTGGCGAGTATGACCATACG 240 consensus_29#1 ------------------------------------------------------------ consensus_29#0 AAAAATTATCCCTTCGATGTCGATCAATGGCGTGGTATGACTTTTGTAACCGTACCAAGA 300 consensus_29#1 ------------------------------------------------------------ consensus_29#0 TACAAAGGTGTACCTTCTTCTTTGAACGTGATATCTGAGAAAATTGGCAACGGTGGACGA 360 consensus_29#1 ------------------------------------------------------------ consensus_29#0 CTTCTACAACCGTATCCTGATTGGTCGTGGGCGAACTATAAAGATTGCTCTGGAATAGTG 420 consensus_29#1 ------------------------------------------------------------ consensus_29#0 AGCGCTTACAAAATTGCGATCGACAAGTTCGACAGATTGTGGATTCTGGACTCAGGTATT 480 consensus_29#1 ------------------------------------------------------------ consensus_29#0 ATCAATAATACTCAACCCATGTGTTCACCAAAATTGCATGTCTTTGATCTCAATACCTCA 540 consensus_29#1 ------------------------------------------------------------ consensus_29#0 CATCAGCTTAAGCAAGTTGTGATGCCGCACGATATTGCCGTAAATGCCAGCACAGGGAAT 600 consensus_29#1 ------------------------------------------------------------ consensus_29#0 GGGGGACTCGTATCACTAGTTGTTCAAGCTATGGATCCTGTGAATACTATCGTGTATATG 660 consensus_29#1 ------------------------------------------------------------ consensus_29#0 GCAGATGACAAAGGTGATGCTTTAATCGTCTACCAAAATTCTGACGAATCTTTCCATCGA 720 consensus_29#1 ------------------------------------------------------------ consensus_29#0 TTGACTTCCAACACTTTCGATTACGATCCCAAATATATCAAAATGATGGCCGCGGGAGAA 780 consensus_29#1 ------------------------------------------------------------ consensus_29#0 AGTTTCACAGCGCAAGATGGAATTTTTGGAATGGCACTCAGTCCCATGACAAACAATCTT 840 consensus_29#1 ------------------------------------------------------------ consensus_29#0 TATTACAGCCCTCTTTCTTCTCGCAGTTTGTATTATGTTAATACAAAACCATTCATGAAA 900 consensus_29#1 ------------------------------------------------------------ consensus_29#0 TCAGAATATGGAGCAAATAACGTACAATATCAAGGTGTCCAAGATATTTTCAACACTGAA 960 consensus_29#1 ------------------------------------------------------------ consensus_29#0 TCGATTGCTAAAATAATGTCGAAAAATGGCGTTCTCTTTTTCGGCCTCATGAATAATTCA 1020 consensus_29#1 ------------------------------------------------------------ consensus_29#0 GCTATTGGTTGTTGGAACGAGCATCAACCACTTCAGAGAGAAAATATGGATATGGTCGCT 1080 consensus_29#1 ------------------------------------------------------------ consensus_29#0 CAGAATGAAGAGACTCTTCAAACGGTCGTTGCTATGAAAATGATGCATCTCCCACAATCC 1140 consensus_29#1 -AGAATGAAGAGACTCTTCAAACGGTCGTTGCTATGAAAATGATGCATCTCCCACAATCC 59 *********************************************************** consensus_29#0 AACAAGATGAATAGGATGCATAGGATGAATAGAGTGAATAGAGTGAATAGAATGGATAGA 1200 consensus_29#1 AACAAGATGAATAGGATGCATAGGATGAATAGAGTGAATAGAGTGAATAGAATGGATAGA 119 ************************************************************ consensus_29#0 ATGGATAGAATAGATAGGATGGATAGGATGGATAGGATGGATACAATGGATACAATGGAT 1260 consensus_29#1 ATGGATAGAATAGATAGGATGGATACAATGGATACAATGGATACAATGGATAGAACAGAT 179 ************************* ******* **************** ** *** consensus_29#0 AGAATAGATAGGATGGATAGGATGGATAGAATAGATAGGATAGATAGGATGGATACAATG 1320 consensus_29#1 AAGATGAGTAGCATGGATAGGATGGATAGAATGGATAGGGTGGATAGGATGGATACAATG 239 * ** *** ******************** ****** * ****************** consensus_29#0 GATACAATGGATACAATGGATAGAACAGATAAGATGAGTAGCATGGATAGGATGGATAGA 1380 consensus_29#1 GATAGAACAGATAAGATGAGTAGCATGGATAG---------------------------- 271 **** ** **** *** *** * **** consensus_29#0 ATGGATAGGGTGGATAGGATGGATACAATGGATAGAACAGATAAGATGAGTAGCATGGAT 1440 consensus_29#1 ------------------------------------------------------------ consensus_29#0 AGGATGGATAGAATGGATAGGGTGGATACAATGGATACAATGGATACAATGGATAGAATG 1500 consensus_29#1 ------------------------------------------------------------ consensus_29#0 GATAGGATGGATAGGATGGATAGAATGGATAGAATGGATAGGATGGATACAATGGATAGA 1560 consensus_29#1 ------------------------------------------------------------ consensus_29#0 ACAGATAAGATGAGTAGGATAGATAGAATGGATAAAATAGATAGAATGGATAGGATGGAT 1620 consensus_29#1 ------------------------------------------------------------ consensus_29#0 AGGACAAATAGAATGGATAGAATGAATAGGATGAATAGACAAATGAATGAATATATGATG 1680 consensus_29#1 ------------------------------------------------------------ consensus_29#0 GCTTTAAGTATGAAATTACAGAAATTTATAAATAATGATTATAATTTCAACGAAGTAAAC 1740 consensus_29#1 ------------------------------------------------------------ consensus_29#0 TTCCGAATTTTGGGTGCAAATGTAAACGATTTAATAATGAATACTCGTTGTGCAAATTCT 1800 consensus_29#1 ------------------------------------------------------------ consensus_29#0 GACAATCAGAATAACAATCAAAATAAGCATAATAATTAAGATGATCGTTCTTTATATTAA 1860 consensus_29#1 ------------------------------------------------------------ consensus_29#0 AATCTGTTAATCAGTCTTTTCTCGATATAAACCAAATATTCTTTAAAATTTCTTTATATT 1920 consensus_29#1 ------------------------------------------------------------ consensus_29#0 ATAAATGAATAAAATAA 1937 consensus_29#1 ----------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |