These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2920#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 477 fasta sequence [CTATTACACAATTTCAATTAAATGAAAGATTATTTCATTGTAAAAGACAAAGTATTCTCACAGTTATACCTCAGGGCACACGAGTCAAGCAGGTGCGTCAGTATGGCCATAAGGCACCATTATCACTTGACCTTATTCGCCAGCGTGTACTTTTAGTACTCAATCTCTATGATAAAGTTGATGTTCAGAAGTTATCTTTGAACTCTCATTTTATGCAAGATCTGGGTTTGGATTCTTTGGATCATGTAGAAATTATAATGGCTATAGAAGATGAATTTGGTTTTGAAATACCAGATATGGATGCACAGAAGCTTCTACGACCTGCGGATATAGTACGTTACGTTGCCGATAGAGAAGATGTTTACGAATAAATATTCATATAATATAAATCATCTCATTAGTCAAGCTTTTTTATTTTTAAAACATTATTAAAAAAAATAATAAATTTTATTTCTTCTGTATATAATATAAATTGTA] [+] EMBL BI508135 [CTATTACACAATTTCAATTAAATGAAAGATTATTTCATTGTAAAAGACAAAGTATTCTCACAGTTATACCTCAGGGCACACGAGTCAAGCAGGTGCGTCAGTATGGCCATAAGGCACCATTATCACTTGACCTTATTCGCCAGCGTGTACTTTTAGTACTCAATCTCTATGATAAAGTTGATGTTCAGAAGTTATCTTTGAACTCTCATTTTATGCAAGATCTGGGTTTGGATTCTTTGGATCATGTAGAAATTATAATGGCTATAGAAGATGAATTTGGTTTTGAAATACCAGATATGGATGCACAGAAGCTTCTACGACCTGCGGATATAGTACGTTACGTTGCCGATAGAGAAGATGTTTACGAATAAATATTCATATAATATAAATCATCTCATTAGTCAAGCTTTTTTATTTTTAAAACATTATTAAAAAAAATAATAAATTTTATTTCTTCTGTATATAATATAAATTGTA] consensusID : consensus_2920#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 425 fasta sequence [AGTTCGTATTTTAATAAGAAATACCGGTGCTTTTAGAAATTTGATCTCTCGAACGTGTTTACGAAGTGCTATTACACAATTTCAATTAAATGAAAGATTATTTCATTGTAAAAGACAAAGTATTCTCACAGTTATACCTCAGGTAAATATACAAAATATTCGTACATCCACTTCAAAACCTAAAACTCAAGAACTAGAAGAACGTGTTTTAAATGTGGTCCAAGCTTATGATAAAATAACTGCTGACAAGTTATCTTTGAACTCTCATTTTATGCAAGATCTGGGTTTGGATTCTTTGGATCATGTAGAAATTATAATGGCTATAGAAGATGAATTTGGTTTTGAAATACCAGATATGGATGCACAGAAGCTTCTACGACCTGCGGATATAGTACGTTACGTTGCCGATAGAGAAGATGTTTACG] [+] EMBL BI510891 [AGTTCGTATTTTAATAAGAAATACCGGTGCTTTTAGAAATTTGATCTCTCGAACGTGTTTACGAAGTGCTATTACACAATTTCAATTAAATGAAAGATTATTTCATTGTAAAAGACAAAGTATTCTCACAGTTATACCTCAGGTAAATATACAAAATATTCGTACATCCACTTCAAAACCTAAAACTCAAGAACTAGAAGAACGTGTTTTAAATGTGGTCCAAGCTTATGATAAAATAACTGCTGACAAGTTATCTTTGAACTCTCATTTTATGCAAGATCTGGGTTTGGATTCTTTGGATCATGTAGAAATTATAATGGCTATAGAAGATGAATTTGGTTTTGAAATACCAGATATGGATGCACAGAAGCTTCTACGACCTGCGGATATAGTACGTTACGTTGCCGATAGAGAAGATGTTTACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2920#0 ------------------------------------------------------------ consensus_2920#1 AGTTCGTATTTTAATAAGAAATACCGGTGCTTTTAGAAATTTGATCTCTCGAACGTGTTT 60 consensus_2920#0 --------CTATTACACAATTTCAATTAAATGAAAGATTATTTCATTGTAAAAGACAAAG 52 consensus_2920#1 ACGAAGTGCTATTACACAATTTCAATTAAATGAAAGATTATTTCATTGTAAAAGACAAAG 120 **************************************************** consensus_2920#0 TATTCTCACAGTTATACCTCAGGGCACACGAGTCAAGCAGGTGCGTCAGTATGGCCATAA 112 consensus_2920#1 TATTCTCACAGTTATACCTCAGG-TAAATATACAAAATA------TTCGTACATCCACTT 173 *********************** * * ** * * *** *** consensus_2920#0 GGCACCATTATCACTTGACCTTATTCGCCAGCGTGTACTTTTAGTACTCAATCTCTATGA 172 consensus_2920#1 CAAAAC-CTAAAACTCAAGAAC-TAGAAGAACGTGTTTTAAATGTGGTCCAAGCTTATGA 231 * * ** *** * * * ***** * ** ** * ***** consensus_2920#0 TAAAGTTGATGTTCAGAAGTTATCTTTGAACTCTCATTTTATGCAAGATCTGGGTTTGGA 232 consensus_2920#1 TAAAATAACTGCTGACAAGTTATCTTTGAACTCTCATTTTATGCAAGATCTGGGTTTGGA 291 **** * ** * * ******************************************** consensus_2920#0 TTCTTTGGATCATGTAGAAATTATAATGGCTATAGAAGATGAATTTGGTTTTGAAATACC 292 consensus_2920#1 TTCTTTGGATCATGTAGAAATTATAATGGCTATAGAAGATGAATTTGGTTTTGAAATACC 351 ************************************************************ consensus_2920#0 AGATATGGATGCACAGAAGCTTCTACGACCTGCGGATATAGTACGTTACGTTGCCGATAG 352 consensus_2920#1 AGATATGGATGCACAGAAGCTTCTACGACCTGCGGATATAGTACGTTACGTTGCCGATAG 411 ************************************************************ consensus_2920#0 AGAAGATGTTTACGAATAAATATTCATATAATATAAATCATCTCATTAGTCAAGCTTTTT 412 consensus_2920#1 AGAAGATGTTTACG---------------------------------------------- 425 ************** consensus_2920#0 TATTTTTAAAACATTATTAAAAAAAATAATAAATTTTATTTCTTCTGTATATAATATAAA 472 consensus_2920#1 ------------------------------------------------------------ consensus_2920#0 TTGTA 477 consensus_2920#1 ----- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |