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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2946#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 622 fasta sequence
[AATTATAGAGATGAATATCCAGAAGCCTGAGGGTCTTCTATCTGTGGTTTTACCAACTGAACTTGCGTCTTCACCGAGTTCGCGACAACTCATTATAAATCAAGACCAACAGGATGAAGAAGCGTCGGATTGTCCACTTTTAACTCCTAGTCCGCCGACCACTCAAGTGAACAATGCTTTGGAATCAAGCGCGATCTTCGTCTCTCTGGAAGGAAATCCCGTGGAATCAATTCCACCGCCAACACTTGAAAACATTAATAAAGAAGATGGCCTTAATGAGTTCATGAACATAGTGAACAGTTCAAGCAGAACACTGAATGATGAACCAAGTTCACGGGATCCAATGGTGGAATCGACGACCAGTGGAAGCAGCAGTGACACAAATGGACCTGTTTGTGCACAATTACTGACTCAGTTAAACACAGCCTATCAACACCTTGCTCCTGATGCTCAAGCATTGGTAAGCATTCAATAAATTTTTCTCATTAATGAAATTTTCTTGTAGTGATACTGGAAAATGATTAAATGAACCTGATGGAACAGATATAGCGAGATTATGTGAAACAGATTAACCATGAATGCAAATTCTTTAAACTATAAATATTAGAGATATATTTATTAA]
[+] EMBL BI507997 [AATTATAGAGATGAATATCCAGAAGCCTGAGGGTCTTCTATCTGTGGTTTTACCAACTGAACTTGCGTCTTCACCGAGTTCGCGACAACTCATTATAAATCAAGACCAACAGGATGAAGAAGCGTCGGATTGTCCACTTTTAACTCCTAGTCCGCCGACCACTCAAGTGAACAATGCTTTGGAATCAAGCGCGATCTTCGTCTCTCTGGAAGGAAATCCCGTGGAATCAATTCCACCGCCAACACTTGAAAACATTAATAAAGAAGATGGCCTTAATGAGTTCATGAACATAGTGAACAGTTCAAGCAGAACACTGAATGATGAACCAAGTTCACGGGATCCAATGGTGGAATCGACGACCAGTGGAAGCAGCAGTGACACAAATGGACCTGTTTGTGCACAATTACTGACTCAGTTAAACACAGCCTATCAACACCTTGCTCCTGATGCTCAAGCATTGGTAAGCATTCAATAAATTTTTCTCATTAATGAAATTTTCTTGTAGTGATACTGGAAAATGATTAAATGAACCTGATGGAACAGATATAGCGAGATTATGTGAAACAGATTAACCATGAATGCAAATTCTTTAAACTATAAATATTAGAGATATATTTATTAA]
consensusID : consensus_2946#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 438 fasta sequence
[ACACGCAATTGAAAAACACGTACATTATTTTATTTGATCGTTAATTAATTGCAGAACCAAGTTCACGGGATCCAATGGTGGAATCGACGACCAGTGGAAGCAGCAGTGACACAAATGGACCTGTTTGTGCACAATTACTGACTCAGTTAAACACAGCCTATCAACACCTTGCTCCTGATGCTCAAGCATTGTTTTACAATCAGGAGAATGGCGGAAAACCACCTTTGGTTGGGATTCAATTGATGGTACCAAAACCATCGAAGGATTATCGTTTCATGAAATGGAATTGGCCGCTCATTAGGAAGACTTGTTTCTGGTCTCTGATGTCAGTTCTTGCTGGTTGTACAGCATTGGTTATTGGTGTAATTGCTACAATGCCAAGAAAATGTGATCCGGCAGTTCAATGGTGGCAAGGCAGTGTCTTCTACGAAATATTTC]
[+] EMBL BI513213 [ACACGCAATTGAAAAACACGTACATTATTTTATTTGATCGTTAATTAATTGCAGAACCAAGTTCACGGGATCCAATGGTGGAATCGACGACCAGTGGAAGCAGCAGTGACACAAATGGACCTGTTTGTGCACAATTACTGACTCAGTTAAACACAGCCTATCAACACCTTGCTCCTGATGCTCAAGCATTGTTTTACAATCAGGAGAATGGCGGAAAACCACCTTTGGTTGGGATTCAATTGATGGTACCAAAACCATCGAAGGATTATCGTTTCATGAAATGGAATTGGCCGCTCATTAGGAAGACTTGTTTCTGGTCTCTGATGTCAGTTCTTGCTGGTTGTACAGCATTGGTTATTGGTGTAATTGCTACAATGCCAAGAAAATGTGATCCGGCAGTTCAATGGTGGCAAGGCAGTGTCTTCTACGAAATATTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2946#0 AATTATAGAGATGAATATCCAGAAGCCTGAGGGTCTTCTATCTGTGGTTTTACCAACTGA 60
consensus_2946#1 ------------------------------------------------------------
consensus_2946#0 ACTTGCGTCTTCACCGAGTTCGCGACAACTCATTATAAATCAAGACCAACAGGATGAAGA 120
consensus_2946#1 ------------------------------------------------------------
consensus_2946#0 AGCGTCGGATTGTCCACTTTTAACTCCTAGTCCGCCGACCACTCAAGTGAACAATGCTTT 180
consensus_2946#1 ------------------------------------------------------------
consensus_2946#0 GGAATCAAGCGCGATCTTCGTCTCTCTGGAAGGAAATCCCGTGGAATCAATTCCACCGCC 240
consensus_2946#1 ------------------------------------------------------------
consensus_2946#0 AACACTTGAAAACATTAATAAAGAAGATGGCCTTAATGAGTTCATGAACATAGTGAACAG 300
consensus_2946#1 ------------------------ACACGCAATTGAAAAA--CACGTACAT--TATTTTA 32
* * * ** * * ** * **** *
consensus_2946#0 TTCAAGCAGAACACTGAATGATGAACCAAGTTCACGGGATCCAATGGTGGAATCGACGAC 360
consensus_2946#1 TTTGATCGTTA-ATTAATTGCAGAACCAAGTTCACGGGATCCAATGGTGGAATCGACGAC 91
** * * * * * * ** **************************************
consensus_2946#0 CAGTGGAAGCAGCAGTGACACAAATGGACCTGTTTGTGCACAATTACTGACTCAGTTAAA 420
consensus_2946#1 CAGTGGAAGCAGCAGTGACACAAATGGACCTGTTTGTGCACAATTACTGACTCAGTTAAA 151
************************************************************
consensus_2946#0 CACAGCCTATCAACACCTTGCTCCTGATGCTCAAGCATTGGTAAGCATTCAATAAATT-- 478
consensus_2946#1 CACAGCCTATCAACACCTTGCTCCTGATGCTCAAGCATTGTTTTACAATCAGGAGAATGG 211
**************************************** * ** *** * * *
consensus_2946#0 -------TTTCTCATTAATGAAATTTTCTTGTAGTGATACTGGAAAATGATTAAATGA-- 529
consensus_2946#1 CGGAAAACCACCTTTGGTTGGGATTCAATTG--ATGGTACC--AAAACCATCGAAGGATT 267
* * ** *** *** ** *** **** ** ** **
consensus_2946#0 ---ACCTGATGGAACAGATATAGCGAG--ATTATGTGAAACAGATT--AACCATGAATGC 582
consensus_2946#1 ATCGTTTCATGAAATGGAATTGGCCGCTCATTAGGAAGACTTGTTTCTGGTCTCTGATGT 327
* *** ** ** * ** **** * * * ** * ***
consensus_2946#0 AAATTCTT------TAAACTATAAATATTAGAGATATATTTATTAA-------------- 622
consensus_2946#1 CAGTTCTTGCTGGTTGTACAGCATTGGTTATTGGTGTAATTGCTACAATGCCAAGAAAAT 387
* ***** * ** * *** * * ** ** **
consensus_2946#0 ---------------------------------------------------
consensus_2946#1 GTGATCCGGCAGTTCAATGGTGGCAAGGCAGTGTCTTCTACGAAATATTTC 438
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |