These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_300#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 853 fasta sequence [CTTCCGCTTTTATCTCATCCGCTATCACGGGTTTTTTGTGGTCCAATTTTTTTTTTTTTTTTTTCTATTTCTCCCCCCCTCTCCCCCCTTTTCCTTTTCTTTTTTTTTAAATCGCGTGTTTAAATCGTTTGTTACGTGTGACAATACATGCTCCGTTTATAGGATATTTAAGATTGTACGATGTATTTTTTTTATACGAGAGATGTTTGAAAGCACAAACAACCTGTAACCTCGAGAATGCGNNAAAAATGTTTGTTGGTTCTTTCTCATAGCTTAGATAAATATCGCTATCGATTATCGCC-TTTGCCAATTGCGATTATTATTACCGATTATTACCCTGCGATTTGTATACCGTTTGTTCTAATCAATTAGGATTAAGGATTAATAATGTTTCGATCGATCGATCGATCGATCGATCGATACGGACCGTGATAATTTTATATAAGTTGAAATGATCGGTGCCTTTCGAGGAGAAAGAGAATTCCGTGTCGATGTCTGTCACGAATATTGTACGATAAATTTCGGTCTGTCACTGATATACAATCATATACAATGCTATTTTTAAAAAAAAAGAAAAAAAAACGAATAAACGTATCAAACAATCGCATCGAATAAATCTTTTCACGAACGAGTGGACTTTCGCCGATTTATATATACATATCACTTTGGCTCGTTTTATCATTTTAACAAGCTTTTCGACTCGTATCGTTAAAAGGAAGAAGAGTTTCAAGACTGCGTGCGTTGAAAGAAGCGTGAATAGAATCCTTGCTCGATTCTCCATATACAACGCGAACACCTGTCATCATCGATCGCACGATTTGCTTATGAAACGACTATCTACGTGTATTTTATA] [+] EMBL BI506607 [CTTCCGCTTTTATCTCATCCGCTATCACGGGTTTTTTGTGGTCCAATTTTTTTTTTTTTTTTTTCTATTTCTCCCCCCCTCTCCCCCCTTTTCCTTTTCTTTTTTTTTAAATCGCGTGTTTAAATCGTTTGTTACGTGTGACAATACATGCTCCGTTTATAGGATATTTAAGATTGTACGATGTATTTTTTTTATACGAGAGATGTTTGAAAGCACAAACAACCTGTAACCTCGAGAATGCGNNAAAAATGTTTGTTGGTTCTTTCTCATAGCTTNNATAAATATCGCTATCGATTATCGCCGTTCGCCAATTGCGATTATTATTACCGATTATTACCCTGCGATTTGTATACCGTTTGTTCTAATCAATTAGGATTAAGGATTAATAATGTT TCGATCGATCGATCGATCGATCGATACGGACCGTGATAATTTTATATAAGTTGAAAT ] [-] EMBL BI510120 [ AAATGTTTGTTGGTTCTTTCTCATAGCTTAGATAAATATCGCTATCGATTATCGCC TTTGCCAATTGCGATTATTATTACCGATTATTACCCTGCGATTTGTATACCGTTTGTTCTAATCAATTAGGATTAAGGATTAATAATGTTTCGATCGATCGATCGATCGATCGATCGATACGGACCGTGATAATTTTATATAAGTTGAAATGATCGGTGCCTTTCGAGGAGAAAGAGAATTCCGTGTCGATGTCTGTCACGAATATTGTACGATAAATTTCGGTCTGTCACTGATATACAATCATATACAATGCTATTTTT AAAAAAAAGAAAAAAAAACGAATAAACGTATCAAACAATCGCATCGAATAAATCTTTTCACGAACGAGTGGACTTTCGCCGATTTATATATACATATCACTTTGGCTCGTTTTATCATTTTAACAAGCTTTTCGACTCGTATCGTTAAAAGGAAGAAGAGTTTCAAGACTGCGTGCGTTGAAAGAAGCGTGAATAGAATCCTTGCTCGATTCTCCATATACAACGCGAACACC ] [-] EMBL BI506718 [ AATGTTTGTTGGTTCTTTCTCATAGCTTAGATAAATATCGCTATCGATTATCGCC TTTGCCAATTGCGATTATTATTACCGATTATTACCCTGCGATTTGTATACCGTTTGTTCTAATCAATTAGGATTAAGGATTAATAATGTTTCGATCGATCGATCGATCGATCGATCGATACGGACCGTGATAATTTTATATAAGTTGAAATGATCGGTGCCTTTCGAGGAGAAAGAGAATTCCGTGTCGATGTCTGTCACGAATATTGTACGATAAATTTCGGTCTGTCACTGATATACAATCATATACAATGCTATTTTTAAAAAAAAAGAAAAAAAAACGAATAAACGTATCAAACAATCGCATCGAATAAATCTTTTCACGAACGAGTGGACTTTCGCCGATTTATATATACATATCACTTTGGCTCGTTTTATCATTTTAACAAGCTTTTCGACTCGTATCGTTAAAAGGAAGAAGAGTTTCAAGACTGCGTGCGTTGAAAGAAGCGTGAATAGAATCCTTGCTCGATTCTCCATATACAACGCGAACACCTGTCATCATCGATCGCACGATTTGCTTATGAAACGACTATCTACGTGTATTTTATA] consensusID : consensus_300#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence [CCAAGTTACCGACTTAGAGTTTATAACGTGAACGTTNACATTATTTGTCGCTTTCGAACGGGCGACTTTCTTTTCTCTCTCTCTTTTTCTATTCCTTTCCTTTTCTAACGCGATTACAGTAAAAAATTGTAGAGTTTTTTTTCCCCCTCCTTCCCCCTCCTTTTTACTCTCTCCACTGCTCGGTGTATACCTTTCAGAAAGATTATTATTATTATTATTATTATTATTATTATTATTACTATTATTATTATTATTATTATTATTATTATTATTAACGAGAACGAGATAGATTATGTATAAATATATATATATATACGTATCGTTTATACGTGGTGCACGTGGTGGGAAGTTGATGTACAACGATGAGGAGAAGGATCTTTTTTTAATATCCGCGGGTATGTGGTTATTTTTTACTTTTTATTTCTTTTTTCCCCCCCTCTCCCCCCTTTTCCTTTTCTTTTTTTTTTAAATCGCGTGTTTAAATCGTTTGTTACGTGTGACAATACATGCTCCGTTTATAGGATATTTAAGATTGTACGATGTATTTTTTTTATACGAGAGATGTTTGAAAGCACAAACAACCTGT] [+] EMBL BI509264 [CCAAGTTACCGACTTAGAGTTTATAACGTGAACGTTNACATTATTTGTCGCTTTCGAACGGGCGACTTTCTTTTCTCTCTCTCTTTTTCTATTCCTTTCCTTTTCTAACGCGATTACAGTAAAAAATTGTAGAGTTTTTTTTCCCCCTCCTTCCCCCTCCTTTTTACTCTCTCCACTGCTCGGTGTATACCTTTCAGAAAGATTATTATTATTATTATTATTATTATTATTATTATTACTATTATTATTATTATTATTATTATTATTATTATTAACGAGAACGAGATAGATTATGTATAAATATATATATATATACGTATCGTTTATACGTGGTGCACGTGGTGGGAAGTTGATGTACAACGATGAGGAGAAGGATCTTTTTTTAATATCCGCGGGTATGTGGTTATTTTTTACTTTTTATTTCTTTTTTCCCCCCCTCTCCCCCCTTTTCCTTTTCTTTTTTTTTTAAATCGCGTGTTTAAATCGTTTGTTACGTGTGACAATACATGCTCCGTTTATAGGATATTTAAGATTGTACGATGTATTTTTTTTATACGAGAGATGTTTGAAAGCACAAACAACCTGT] consensusID : consensus_300#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 476 fasta sequence [TTCTTTTTTTTCTTTTTTTTTTTGCCCTTCTTTTTTCTCCTTCGTGAACGAATCTTACGAACTATAGAAATATGTCGGATTGACCACGAACGATCGAACCATCGAGAAATCCTTTTCGCGCGCTTTCGCCGTACTTCCGCTTTTATCTCATCCGCTATCACGGGTTTTTTGTGGTCCAATTTTTTTTTTTTTTTTTTCATTGGGCTTTGCTAAAAGTTCCCTGGTCACTTCATAACCTCCAAAAAAAAAGAAATAACCAGGCATTTCACGTGCTATGGTTGATGATAACCCAGTAAATAAACCTCTCATGCCTTGATTTTTAAGAATTTGACGTGTCAATCCCCATGGTCCAATTTTTTTCTAAACAAGATACTTTTTTCAAAATTTAATTTTCATGAATNTTTATATATTAATTTTTATTTATTTTTTATTTTAGTTATACTAACTTCACTTATTGATGATTCGCTTTCTATTTG] [+] EMBL BI511473 [TTCTTTTTTTTCTTTTTTTTTTTGCCCTTCTTTTTTCTCCTTCGTGAACGAATCTTACGAACTATAGAAATATGTCGGATTGACCACGAACGATCGAACCATCGAGAAATCCTTTTCGCGCGCTTTCGCCGTACTTCCGCTTTTATCTCATCCGCTATCACGGGTTTTTTGTGGTCCAATTTTTTTTTTTTTTTTTTCATTGGGCTTTGCTAAAAGTTCCCTGGTCACTTCATAACCTCCAAAAAAAAAGAAATAACCAGGCATTTCACGTGCTATGGTTGATGATAACCCAGTAAATAAACCTCTCATGCCTTGATTTTTAAGAATTTGACGTGTCAATCCCCATGGTCCAATTTTTTTCTAAACAAGATACTTTTTTCAAAATTTAATTTTCATGAATNTTTATATATTAATTTTTATTTATTTTTTATTTTAGTTATACTAACTTCACTTATTGATGATTCGCTTTCTATTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_300#0 CTTCCGCTTTTATCTCATCCGCTATCACGGGTTTTTTGTGGTCCAATTTTTTTTTTTTTT 60 consensus_300#1 ------------------------------------------------------------ consensus_300#2 ------------------------------------------------------------ consensus_300#0 TTTTCTATTTCTCCCCCCCTCTCCCCCCTTTTCCTTTTCTTTTTTTTTAAATCGCGTGTT 120 consensus_300#1 ------------------------CCAAGTTACCGACTTAGAGTTTATAACGTGAACGTT 36 consensus_300#2 ------------------------------------------------------------ consensus_300#0 TAAATCGTTTGTTACGTGTGACAATACATGCTCCGTTTATAGGATATTTAAGATTGTACG 180 consensus_300#1 NACATTATTTGTCGCTTTCGAACGGGCGACTTTCTTTTCTC---TCTCTCTTTTTCTATT 93 consensus_300#2 ------------------------------TTCTTTTTTTTC--TTTTTTTTTTTGCCCT 28 * *** * * * * ** consensus_300#0 ATGTATTTTTTTTATACGAGAGATGTTTGAAAGCACAAACAACCTGTAACCTCGAGAATG 240 consensus_300#1 CCTTTCCTTTTCTA-ACGCGATTACAGTAAAAAATTGTAGAGTTTTTTTTCCCCCTCCTT 152 consensus_300#2 TCTTTTTTCTCCTTCGTGAACGAATCTTACGAACTATAGAAATATGTCGGATTGACCACG 88 * * * * * * * * * * consensus_300#0 CGNNAAAAATGTTTGTTGGTTCTTTCTCATAGCTTAGATAAATATCGCTATCGATTATCG 300 consensus_300#1 CCCC-----CTCCTTTTTACTCTCTC-CACTGCTCGG-TGTATACCTTTCAGAAAGATTA 205 consensus_300#2 AACG----------ATCGAACCATCGAGAAATCCTTTTCGCGCGCTTTCGCCGTACTTCC 138 * * * * * consensus_300#0 CCTTTGCCAATTGCGATTATTATTACCGATTATTACCCTGCGATTTGTATACCGTTTGTT 360 consensus_300#1 TTATT----ATTATTATTATTATTATT-ATTATTAT--TACTATTATTATTATTATTATT 258 consensus_300#2 GCTTT---TATCTCATCCGCTATCACGGGTTTTT----TGTGGTCCAATTTTTTTTTTTT 191 ** ** *** * ** ** * * * ** ** consensus_300#0 CTAATCAATTAGGATTAAGGATTAATAATGTTTCGATCGATCGATCGATCGATCGATCGA 420 consensus_300#1 ATTATTA-TTATTATTAACGAG-AACGAGATA--GATT-ATGTATAAATATATATATATA 313 consensus_300#2 TTTTTTCATTGGGCTTTGCTAAAAGTTCCCT---GGTCACTTCATAA--CCTCCAAAAAA 246 * * ** ** * * * * * * ** * * consensus_300#0 TACGGACCGTGATAATTTTATATAAGTTGAAATGA-TCGGTGCCTTTCGAGGAGAAAGAG 479 consensus_300#1 TACGTATCGTTTATACGTGGTGCACGTGGTGGGAAGTTGATGTACAACGATGAGGAGAAG 373 consensus_300#2 AAAGAAATAACCAGGCATTTCACGTGCTATGG----TTGATG-ATAACCCAGTAAATAAA 301 * * * * * * * ** * * * * consensus_300#0 AATTCCGTGTCGATGTCTGTCACGA-------ATATTGTACGATAAATTTCGGTCTGTCA 532 consensus_300#1 GATCTTTTTTTAATATCCGCGGGTATGTGGTTATTTTTTACTTTTTATTTCTTTTTTCCC 433 consensus_300#2 CCTCTCATGCCTTGATTTTTAAGAA----------TTTGACGTGTCAATCCCCATGGT-- 349 * * * * ** ** * * * consensus_300#0 CTGATATACAATCATATACAATGCTATTTTTAAAAAAAAAGAAAAAAAAACGAATAAACG 592 consensus_300#1 CCCCTCTCCCCCCTTTTCCTTTTCTTTTTTTTTTAAATCGCGTGTTTAAATCGTTTGTTA 493 consensus_300#2 CCAATTTTTTTCTAAACAAGATACTTTTTTCAAAATTTAATTTTCATGAATNTTTATATA 409 * * * * ** **** * ** * consensus_300#0 TATCAAACAATCGCATCGAATAAATCTTTTCACGAACGAGTGGACTTTCGCCGATTTATA 652 consensus_300#1 CGTGTGACAAT-ACAT------GCTCCGTTTATAGGATATTTAAGATTGTACGATGTAT- 545 consensus_300#2 T---TAATTTTTATTT------ATTTTTTATTTTAGTTATACTAACTTCACTTATTGATG 460 * * * * * * * ** ** ** consensus_300#0 -TATACATATCACTTTGGCTCGTTTTATCATTTTAACAAGCTTTTCGACTCGTATCGTTA 711 consensus_300#1 -TTTTTTTAT-ACGAGAGAT-GTTTGAAAGCACAAACAACCTGT---------------- 586 consensus_300#2 ATTCGCTTTCTATTTG-------------------------------------------- 476 * * * consensus_300#0 AAAGGAAGAAGAGTTTCAAGACTGCGTGCGTTGAAAGAAGCGTGAATAGAATCCTTGCTC 771 consensus_300#1 ------------------------------------------------------------ consensus_300#2 ------------------------------------------------------------ consensus_300#0 GATTCTCCATATACAACGCGAACACCTGTCATCATCGATCGCACGATTTGCTTATGAAAC 831 consensus_300#1 ------------------------------------------------------------ consensus_300#2 ------------------------------------------------------------ consensus_300#0 GACTATCTACGTGTATTTTATA 853 consensus_300#1 ---------------------- consensus_300#2 ---------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |