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Apis mellifera
cluster # 302 cluster # 302       Sequences # 5       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_302#0 length = 762 sequences # 4  
 consensus_302#1 length = 393 sequences # 1  
consensusID : consensus_302#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 762
fasta sequence 
                              [CGTTACGAATCCACAGCATCTTCGCATGACGACCGTTTAATTCAACATACAAGAAGCTACACGCTGTGACTGCATTCAATCACTGATTTGGGATCGTTTTACCAGTTCAAATACGACCTGGGCTTTAATTCACAGAGACGCTGAAAGAAAGACTAAAAACATGGGATGCAATACGGGCCGATGCCTCGGTCCAGACGATACGGGGTACCCTGGATCAGAATTCATGGCAGCCATTAGAAAGAAATTGGTTATTGTGGGTGATGGTGCTTGTGGTAAAACATGCTTACTTATAGTCTTCAGCAAAGACCAATTTCCAGAAGTTTATGTACCTACAGTGTTTGAAAATTATGTTGCAGATATTGAAGTTGATGGGAAACAAGTGGAACTGGCTCTTTGGGACACAGCTGGACAAGAAGATTATGATAGGTTGCGTCCACTATCATATCCTGACACAGATGTAATCTTAATGTGTTTCTCTATTGATAGTCCAGATTCCCTGGAAAACATTCCTGAGAAATGGACACCAGAGGTGAAGCACTTTTGCCCAAATGTGCCCATTATCCTTGTTGGAAACAAAAAAGACTTACGCAATGATCCTAATACAATCAAAGAACTTAGTAAGATGAAACAAGAACCAGTTAAGCCAGAAGNNGGAAGAGCTATGGCTGAAAAAATCAATGCCTTTGCTTATCTTGAATGTTCTGCTAAAAGTAAGGAAGGTATTAGGGAAGTATTTGAAACAGCCACTCGGGCAGCATTACA]

[+] EMBL BI515281             [CGTTACGAATCCACAGCATCTTCGCATGACGACCGTTTAATTCAACATACAAGAAGCTACACGCTGTGACTGCATTCAATCACTGATTTGGGATCGTTTTACCAGTTCAAATACGACCTGGGCTTTAATTCACAGAGACGCTGAAAGAAAGACTAAAAACATGGGATGCAATACGGGCCGATGCCTCGGTCCAGACGATACGGGGTACCCTGGATCAGAATTCATGGCAGCCATTAGAAAGAAATTGGTTATTGTGGGTGATGGTGCTTGTGGTAAAACATGCTTACTTATAGTCTTCAGCAAAGACCAATTTCCAGAAGTTTATGTACCTACAGTGTTTGAAAATTATGTTGCAGATATTGAAGTTGATGGGAAACAAGTGGAACTGGCTCTTTGGGACACAGCTGGACAAGAAGATTATGATAGGTTGCGTCCACTATCATATCCTGAC                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BI516343             [                                                                                                                                                                ATGGGATGCAATACGGGCCGATGCCTCGGTCCAGACGATACGGGGTACCCTGGATCAGAATTCATGGCAGCCATTAGAAAG  ATTGGTTATTGTGGGTGATGGTGCTTGTGGTAAAACATGCTTACTTATAGTCTTCAGCAAAGACCAATTTCCAGAAGTTTATGTACCTACAGTGTTTGAAAATTATGTTGCAGATATTGAAGTTGATGGGAAACAAGTGGAACTGGCTCTTTGGGACACAGCTGGACAAGAAGATTATGATAGGTTGCGTCCACTATCATATCCTGACACAGATGTAATCTTAATGTGTTTCTCTATTGATAGTCCAGATTCCCTGGAAAACATTCCTGAGAAATGGACACCAGAGGTGAAGCACTTTTGCCCAAATGTGCCCATTATCCTTGTTGGAAACAAAAAAGACTTACGCAATGATCCTAATACAATCAAAGAACTTAGTAAGATGAAACAA                                                                                                                                   ]
[+] EMBL BI513641             [                                                                                                                                                                                            GTCCAGACGATACGGGGTACCCTGGATCAGAATTCATGGCAGCCATTAGAAAGAAATTGGTTATTGTGGGTGATGGTGCTTGTGGTAAAACATGCTTACTTATAGTCTTCAGCAAAGACCAATTTCCAGAAGTTTATGTACCTACAGTGTTTGAAAATTATGTTGCAGATATTGAAGTTGATGGGAAACAAGTGGAACTGGCTCTTTGGGACACAGCTGGACAAGAAGATTATGATAGGTTGCGTCCACTATCATATCCTGACACAGATGTAATCTTAATGTGTTTCTCTATTGATAGTCCAGATTCCCTGGAAAACATTCCTGAGAAATGGACACCAGNGNTGAAGCACTTTTGCCCAAATGTGCCCATTATCCTTGTTGGAAACAAAAAAGACTTACGCAATGATCCTAATACAATCAAAGAACTTAGTAAGATGAAACAAGAACCAGTTAAGCCAGAAGNNGGAAGAGCTATGGCTGAAAAAATCAATGCCTTTGCTTATCTTGAATG                                                               ]
[+] EMBL BI510627             [                                                                                                                                                                                                                                                                                                                     ATTTCCAGAAGTTTATGTACCTACAGTGTTTGAAAATTATGTTGCAGATATTGAAGTTGATGGGAAACAAGTGGAACTGGCTCTTTGGGACACAGCTGGACAAGAAGATTATGATAGGTTGCGTCCACTATCATATCCTGACACAGATGTAATCTTAATGTGTTTCTCTATTGATAGTCCAGATTCCCTGGAAAACATTCCTGAGAAATGGACACCAGAGGTGAAGCACTTTTGCCCAAATGTGCCCATTATCCTTGTTGGAAACAAAAAAGACTTACGCAATGATCCTAATACAATCAAAGAACTTAGTAAGATGAAACAAGAACCAGTTAAGCCAGAAGAAGGAAGAGCTATGGCTGAAAAAATCAATGCCTTTGCTTATCTTGAATGTTCTGCTAAAAGTAAGGAAGGTATTAGGGAAGTATTTGAAACAGCCACTCGGGCAGCATTACA]




>consensus_302#0
CGTTACGAATCCACAGCATCTTCGCATGACGACCGTTTAATTCAACATACAAGAAGCTAC
ACGCTGTGACTGCATTCAATCACTGATTTGGGATCGTTTTACCAGTTCAAATACGACCTG
GGCTTTAATTCACAGAGACGCTGAAAGAAAGACTAAAAACATGGGATGCAATACGGGCCG
ATGCCTCGGTCCAGACGATACGGGGTACCCTGGATCAGAATTCATGGCAGCCATTAGAAA
GAAATTGGTTATTGTGGGTGATGGTGCTTGTGGTAAAACATGCTTACTTATAGTCTTCAG
CAAAGACCAATTTCCAGAAGTTTATGTACCTACAGTGTTTGAAAATTATGTTGCAGATAT
TGAAGTTGATGGGAAACAAGTGGAACTGGCTCTTTGGGACACAGCTGGACAAGAAGATTA
TGATAGGTTGCGTCCACTATCATATCCTGACACAGATGTAATCTTAATGTGTTTCTCTAT
TGATAGTCCAGATTCCCTGGAAAACATTCCTGAGAAATGGACACCAGAGGTGAAGCACTT
TTGCCCAAATGTGCCCATTATCCTTGTTGGAAACAAAAAAGACTTACGCAATGATCCTAA
TACAATCAAAGAACTTAGTAAGATGAAACAAGAACCAGTTAAGCCAGAAGNNGGAAGAGC
TATGGCTGAAAAAATCAATGCCTTTGCTTATCTTGAATGTTCTGCTAAAAGTAAGGAAGG
TATTAGGGAAGTATTTGAAACAGCCACTCGGGCAGCATTACA

consensusID : consensus_302#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 393
fasta sequence 
                              [CGATAGAGGGCCGAGGGAGTGCCATGCGTTACGAATCCACAGCATCTTCGCATGACGACCGTTTAATTCAACATACAAGAAGCTACACGCTGTGACTGCATTCAATCACTGATTTGGGATCGTTTTACCAGTTCAAATACGACCTGGGCTTTAATTCAAATTCATGGCAGCCATTAGAAAGAAATTGGTTATTGTGGGTGATGGTGCTTGTGGTAAAACATGCTTACTTATAGTCTTCAGCAAAGACCAATTTCCAGAAGTTTATGTACCTACAGTGTTTGAAAATTATGTTGCAGATATTGAAGTTGATGGGAAACAAGTGGAACTGGCTCTTTGGGACACAGCTGGACAAGAAGATTATGATAGGTTGCGTCCACTATCATATCCTGACAC]

[+] EMBL BI511885             [CGATAGAGGGCCGAGGGAGTGCCATGCGTTACGAATCCACAGCATCTTCGCATGACGACCGTTTAATTCAACATACAAGAAGCTACACGCTGTGACTGCATTCAATCACTGATTTGGGATCGTTTTACCAGTTCAAATACGACCTGGGCTTTAATTCAAATTCATGGCAGCCATTAGAAAGAAATTGGTTATTGTGGGTGATGGTGCTTGTGGTAAAACATGCTTACTTATAGTCTTCAGCAAAGACCAATTTCCAGAAGTTTATGTACCTACAGTGTTTGAAAATTATGTTGCAGATATTGAAGTTGATGGGAAACAAGTGGAACTGGCTCTTTGGGACACAGCTGGACAAGAAGATTATGATAGGTTGCGTCCACTATCATATCCTGACAC]




>consensus_302#1
CGATAGAGGGCCGAGGGAGTGCCATGCGTTACGAATCCACAGCATCTTCGCATGACGACC
GTTTAATTCAACATACAAGAAGCTACACGCTGTGACTGCATTCAATCACTGATTTGGGAT
CGTTTTACCAGTTCAAATACGACCTGGGCTTTAATTCAAATTCATGGCAGCCATTAGAAA
GAAATTGGTTATTGTGGGTGATGGTGCTTGTGGTAAAACATGCTTACTTATAGTCTTCAG
CAAAGACCAATTTCCAGAAGTTTATGTACCTACAGTGTTTGAAAATTATGTTGCAGATAT
TGAAGTTGATGGGAAACAAGTGGAACTGGCTCTTTGGGACACAGCTGGACAAGAAGATTA
TGATAGGTTGCGTCCACTATCATATCCTGACAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_302#0      --------------------------CGTTACGAATCCACAGCATCTTCGCATGACGACC 34
consensus_302#1      CGATAGAGGGCCGAGGGAGTGCCATGCGTTACGAATCCACAGCATCTTCGCATGACGACC 60
                                               **********************************

consensus_302#0      GTTTAATTCAACATACAAGAAGCTACACGCTGTGACTGCATTCAATCACTGATTTGGGAT 94
consensus_302#1      GTTTAATTCAACATACAAGAAGCTACACGCTGTGACTGCATTCAATCACTGATTTGGGAT 120
                     ************************************************************

consensus_302#0      CGTTTTACCAGTTCAAATACGACCTGGGCTTTAATTCACAGAGACGCTGAAAGAAAGACT 154
consensus_302#1      CGTTTTACCAGTTCAAATACGACCTGGGCTTTAATTCA---------------------- 158
                     **************************************                      

consensus_302#0      AAAAACATGGGATGCAATACGGGCCGATGCCTCGGTCCAGACGATACGGGGTACCCTGGA 214
consensus_302#1      ------------------------------------------------------------
                                                                                 

consensus_302#0      TCAGAATTCATGGCAGCCATTAGAAAGAAATTGGTTATTGTGGGTGATGGTGCTTGTGGT 274
consensus_302#1      ----AATTCATGGCAGCCATTAGAAAGAAATTGGTTATTGTGGGTGATGGTGCTTGTGGT 214
                         ********************************************************

consensus_302#0      AAAACATGCTTACTTATAGTCTTCAGCAAAGACCAATTTCCAGAAGTTTATGTACCTACA 334
consensus_302#1      AAAACATGCTTACTTATAGTCTTCAGCAAAGACCAATTTCCAGAAGTTTATGTACCTACA 274
                     ************************************************************

consensus_302#0      GTGTTTGAAAATTATGTTGCAGATATTGAAGTTGATGGGAAACAAGTGGAACTGGCTCTT 394
consensus_302#1      GTGTTTGAAAATTATGTTGCAGATATTGAAGTTGATGGGAAACAAGTGGAACTGGCTCTT 334
                     ************************************************************

consensus_302#0      TGGGACACAGCTGGACAAGAAGATTATGATAGGTTGCGTCCACTATCATATCCTGACACA 454
consensus_302#1      TGGGACACAGCTGGACAAGAAGATTATGATAGGTTGCGTCCACTATCATATCCTGACAC- 393
                     *********************************************************** 

consensus_302#0      GATGTAATCTTAATGTGTTTCTCTATTGATAGTCCAGATTCCCTGGAAAACATTCCTGAG 514
consensus_302#1      ------------------------------------------------------------
                                                                                 

consensus_302#0      AAATGGACACCAGAGGTGAAGCACTTTTGCCCAAATGTGCCCATTATCCTTGTTGGAAAC 574
consensus_302#1      ------------------------------------------------------------
                                                                                 

consensus_302#0      AAAAAAGACTTACGCAATGATCCTAATACAATCAAAGAACTTAGTAAGATGAAACAAGAA 634
consensus_302#1      ------------------------------------------------------------
                                                                                 

consensus_302#0      CCAGTTAAGCCAGAAGNNGGAAGAGCTATGGCTGAAAAAATCAATGCCTTTGCTTATCTT 694
consensus_302#1      ------------------------------------------------------------
                                                                                 

consensus_302#0      GAATGTTCTGCTAAAAGTAAGGAAGGTATTAGGGAAGTATTTGAAACAGCCACTCGGGCA 754
consensus_302#1      ------------------------------------------------------------
                                                                                 

consensus_302#0      GCATTACA 762
consensus_302#1      --------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)