These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_31#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 976 fasta sequence [ACTTCGTGGGATTCAAAAAACTATCAACGCGGGACTTCGTGGGATTCGAAGAAGACTATCNNNGTGGGACTTCGTGGGATTCAAAGAAGACTATCAACGCCGGACTGTGGGATTCCAAGAAGACTATCAACGTGGGACTTCGTGGGATTCAAAGAAGAGTATCGACGTGGGACTTCGTGGGATTCAAAGAGGACTATCGACGTGGGACTTCGTGGGATTCAAAGAAGACTATCGACGCGGGACTTCGTGGGATTCAAAGAAGACTATCAATGCCGGACTGTGGGATTCAAAGAAGACTATCAACGCTGGACCGAGGGATTCAAAGAAGACTATCTATCAACGTGGGACTTCGTGGGATTCAAAGAAGACTATCAACATCGGACTGTGGGATTCAAAGAAAATTATCAACGTGGGACTTCGTGGGATTCAAAGAAGATTATGAACGCAGAACTTTGTGGGATTCAAAGAAGATCATCAATGCGGTTTAATGAAATTTCATGATAAATTATTAATGCGGGATTTTATAGGATTGTAGGAAAGCGCCTTCGTATTCAAAAAAAGACTTCGATAAAATTTGTAATCC-AAAAAACCGTCATTGCCAGATATCATGAAATTCAAAAGGAATATTAAAAAAAGATTTAATGAAATTTAAATATTAGCGAGATAAATTTTTAAAAATATAAAAAATT------ATTGGAATTAGAAACAAATCTCAAATTCTGATATTTGAAACTTATTACCAAATACAAGTGTGTTACTTAATGAATTTTCTAAAGAAAGGATCTGCTTATTTCTATTTTATTCACATATTTATGATATTGCTATATTAACTGATTCATATGCTATGATAATATATTCAACGAAATTAGGAAACTATGTGAATGTGAAATAGAAATAAAAATTATGATAAATAGATTTTTTTTCGTAATCGATTATCAATCATTCAAATATAGTTATGTATCTTTTTTAATTTTTATTA] [+] EMBL BI506437 [ACTTCGTGGGATTCAAAAAACTATCAACGCGGGACTTCGTGGGATTCGAAGAAGACTAT NNNGTGGGACTTCGTGGGATTCAAAGAAGACTATCAACGCCGGACTGTGGGATTCCAAGAAGACTATCAACGTGGGACTTCGTGGGATTCAAAGAAGAGTATCGACGTGGGACTTCGTGGGATTCAAAGAGGACTATCGACGTGGGACTTCGTGGGATTCAAAGAAGACTATCGACGCGGGACTTCGTGGGATTCAAAGAAGACTATCAATGCCGGACTGTGGGATTCAAAGAAGACTATCAACGCTGGACCGAGGGATTCAAAGAAGACTATCTATCAACGTGGGACTTCGTGGGATTCAAAGAAGACTATCAACATCGGACTGTGGGATTCAAAGAAAATTATCAACGTGGGACTTCGTGGGATTCAAAGAAGATTATGAACGCAGAACTTTGTGGGAT ] [+] EMBL BI503158 [ TTCGTGGGATTCGAAGAAGACTATCAACGTGGGACTTCGTGGGATTCAAAGAAGACTATCAACGCCGGACTGTGGGATTCCAAGAAGACTATCAACGTGGGACTTCGTGGGATTCAAAGAAGAGTATCGACGTGGGACTTCGTGGGATTCAAAGAGGACTATCGACGTGGGACTTCGTGGGATTCAAAGAAGACTATCGACGCGGGACTTCGTGGGATTCAAAGAAGACTATCAATGCCGGACTGTGGGATTCAAAGAAGACTATCAACGCTGGACCGAGGGATTCAAAGAAGACTATCTATCAACGTGGGACTTCGTGGGATTCAAAGAAGACTATCAACATCGGACTGTGGGATTCAAAGAAAATTATCAACGTGGGACTTCGTGGGATTCAAAGAAGATTATGAACGCAGAACTTTGTGGGATTCAAAGAAGATCATCAATGCGGTTTNATGAAATTTCATGATAAATTATTAATGCGGGATTTTATAGGATTGTAGGAAAGCGCCTTCGTATTCAAAAAAAGACTTC ] [+] EMBL BI508066 [ ACTATCAACGCCGGACTGTGGGATTCCAAGAAGACTATCAACGTGGGACTTCGTGGGATTCAAAGAAGAGTATCGACGTGGGACTTCGTGGGATTCAAAGAGGACTATCGACGTGGGACTTCGTGGGATTCAAAGAAGACTATCGACGCGGGACTTCGTGGGATTCAAAGAAGACTATCAATGCCGGACTGTGGGATTCAAAGAAGACTATCAACGCTGGACCGAGGGATTCAAAGAAGACTATCTATCAACGTGGGACTTCGTGGGATTCAAAGAAGACTATCAACATCGGACTGTGGGATTCAAAGAAAATTATCAACGTGGGACTTCGTGGGATTCAAAGAAGATTATGAACGCAGAACTTTGTGGGATTCAAAGAAGATCATCAATGCGGTTTAATGAAATTTCATGATAAATTATTAATGCGGGATTTTATAGGATTGTAGGAAAGCGCCTTCGTATTCAAAAAAAGACTTCGATAAAATTTGTAATCCAAAAAAACCGTCATTGCCAGATATCATGAAATTCAAAAGGNATATTAAAAAAAGATTTAATGAAATTTAAATATTAGCGAGATAAATTTTTAA ] [+] EMBL BI509092 [ TGGGATTCCAAGAAGACTATCAACGTGGGACTTCGTGGGATTCAAAGAAGAGTATCGACGTGGGACTTCGTGGGATTCAAAGAGGACTATCGACGTGGGACTTCGTGGGATTCAAAGAAGACTATCGACGCGGGACTTCGTGGGATTCAAAGAAGACTATCAATGCCGGACTGTGGGATTCAATGAAGACTATCAACGCTGGACCGAGGGATTCAAAGAAGACTATCTATCAACGTGGGACTTCGTGGGATTCAAAGAAGACTATCAACATCGGACTGTGGGATTCAAAGAAAATTATCAACGTGGGACTTCGTGGGATTCAAAGAAGATTATGAACGCAGAACTTTGTGGGATTCAAAGAAGATCATCAATGCGGTTTAATGAAATTTCATGATAAATTATTAATGCGGGATTTTATAGGATTGTAGGAAAGCGCCTTCGTATTCAAAAAAA ] [+] EMBL BI506801 [ GAGTATCGACGTGGGACTTCGTGGGATTCAAAGAGGACTATCGACGTGGGACTTCGTGGGATTCAAAGAAGACTATCGACGCGGGACTTCGTGGGATTCAAAGAAGACTATCAATGCCGGACTGTGGGATTCAAAGAAGACTATCAACGCTGGACCGAGGGATTCAAANNNGACTATCTATCAACGTGGGACTTCGTGGGATTCAAAGAAGACTATCAACATCGGACTGTGGGAT ] [+] EMBL BI507130 [ TCAAAGAGGACTATCGACGTGGGACTTCGTGGGATTCAAAGAAGACTATCGACGCGGGACTTCGTGGGATTCAAAGAAGACTATCAATGCCGGACTGTGGGATTCAAAGAAGACTATCAACGCTGGACCGAGGGATTCAAAGAAGACTATCTATCAACGTGGGACTTCGTGGGATTCAAAGAAGACTATCAACATCGGACTGTGGGATTCAAAGAAAATTATCAACGTGGGACTTCGTGGGATTCAAAGAAGATTATGAACGCAGAACTTTGTGGGATTCAAAGAAGATCATCAATGCGGTTTAATGAAATTTCATGATAAATTATTAATGCGGGATTTTATAGGATTGTAGGAAAGCGCCTTCGTATTCAAAAAAAGACTTCGATAAAATTTGTAATCC AAAAAACCGTCATTGCCAGATATCATGAAATTCAAAAGGAATATTAAAAAAAGATTTAATGAAATTTAAATATTAGCGAGATAAATTTTTAAAAATATAAAAAATT ATTGGAATTAGAAACAAATCTCAAATTCTGATATTTGAAACTTATTACCAAATACAAGTGTGTTACTTAATGAATTTTCTAAAGAAAGGATCTGCTTATTTCTATTTTATTCACATATTTATGATATTGCTATATTAACTGATTCATATGCTATGATAAT ] [+] EMBL BI517240 [ GGACTTCGTGGGATTCAAAGAAAACTATCAACGCCGGACTGTGGGATTCAAAGAAGACTATCAACGCTGGATCGAAGGATTCAAAGAAGA CTATCAACGTGGGACTTCGTGGGATTCAAAGAAGACTATCAACATCGGACTGTGGGATTCAAAGAAGATTATCAACGTGGGACTTCGTGGGATTCAAAGAAGATTATGAACGCAGAACTTTGTGGGATTCAAAGAAGATCATCAATACGGTTTAATGAAATTTCATGATAAATTATTAATGCGGGATTTTATAGGATTGTAGGAAAGCGCCTTCGTATTCAAAAAAAGACTTCGATGAAATTTGTAATCC AAAAAACCGTCATTGCCAGATATCATGAAATTCAAAAGGAATATTAAAAAAAGATTTAATGAAATTTAAATATTAGCGAGATAAATTTTTAAAGATATAA ] [+] EMBL BI510624 [ TGGGATTCAAAGAAGACTATCAATGCCGGACTGTGGGATTCAAAGAAGACTATCAACGCTGGACCGAGGGATTCAAAGAAGACTATCTATCAACGTGGGACTTCGTGGGATTCAAAGAAGACTATCAACATCGGACTGTGGGATTCAAAGAAAATTATCAACGTGGGACTTCGTGGGATTCAAAGAAGATTATGAACGCAGAACTTTGTGGGATTCAAAGAAGATCATCAATGCGGTTTAATGAAATTTCATGATAAATTATTAATGCGGGATTTTATAGGATTGTAGGAAAGCGCCTTCGTATTCAAAAAAAGACTTCGATAAAATTTGTAATCC AAAAAACCGTCATTGCCAGATATCATGAAATTCAAAAGGAATATTAAAAAAAGATTTAATGAAATTTAAATATTAGCGAGATAAATTTTTAAAAATATAAAAAATT ATTGGAATTAGAAACAAATCTCAAATTCTGATATTTGAAACTTATTACCAAATACAAGTGTGTTACTTA ] [+] EMBL BI517044 [ TGGGATTCAAAGAAGACTATCAACGCTGGACCGAGGGATTCAAAGAAGACTATCTATCAACGTGGGACTTCGTGGGATTCAAAGAAGACTATCAACATCGGACTGTGGGATTCAAAGAAAATTATCAACGTGGGACTTCGTGGGATTCAAAGAAGATTATGAACGCAGAACTTTGTGGGATTCAAAGAAGATCATCAATGCGGTTTAATGAAATTTCATGATAAATTATTAATGCGGGATTTTATAGGATTGTAGGAAAGCGCCTTCGTATTCAAAAAAAGACTTCGATAAAATTTGTAATCC AAAAAACCGTCATTGCCAGATATCATGAAATTCAAAAGGAATATTAAAAAAAGATTTAATGAAATTTAAATATTAGCGAGATAAATTTTTAAAAATATAAAAAATT ATTGGAATTAGAAACAAATCTCAAATTCTGAT ] [+] EMBL BI508724 [ agaCTATCAACGTGGGACTTCGTGGGATTCAAAGAAGACTATCAACATCGGACTGTGGGATTCAAAGAAGATTATCAACGTGGGACTTCGTGGGATTCAAAGAAGATTATGAACGCAGAACTTTGTGGGATTCAAAGAAGATCATCAATACGGTTTAATGAAATTTCATGATAAATTATTAATGCGGGATTTTATAGGATTGTAGGAAAGCGCCTTCGTATTCAAAAAAAGACTTCGATGAAATTTGTAATCC AAAAAACCGTCATTGCCAGATATCATGAAATTCAAAAGGAATATTAAAAAAAGATTTAATGAAATTTAAATATTAGCGAGATAAATTTTTAAAGATATAAAAAATTATTGAAATTGGAATTAGAAACAAATCTCAAATTCTGATATTTGAAACTTATTACCAAATACAAGTGTGTTACTTAATGAATTTTCTAAAGAAAGGATCTGCTTATTTCTATTTTATTCACATATTTATGATATTGCTATATTAACTGATTCATATGCTATGATAATA ] [+] EMBL BI514757 [ TCAACGTGGGACTTCGTGGGATTCAAAGAAGACTATCAACATCGGACTGTGGGATTCAAAGAAAATTATCAACGTGGGACTTCGTGGGATTCAAAGAAGATTATGAACGCAGAACTTTGTGGGATTCAAAGAAGATCATCAATGCGGTTTAATGAAATTTCATGATAAATTATTAATGCGGGATTTTATAGGATTGTAGGAAAGCGCCTTCGTATTCAAAAAAAGACTTCGATAAAATTTGTAATCC AAAAAACCGTCATTGCCAGATATCATGAAATTCAAAAGGAATATTAAAAAAAGATTTAATGAAATTTAAATATTAGCGAGATAAATTTTTAAAAATATAAAAAATT ATTGGAATTAGAAACAAATCTCAAATTCTGATATTTGAAACTTATTACCAAATACAAGTGTGTTACTTAATGAATTTTCTAAAGAAAGGATCTGCTTATTTCTATTTTATTCACATATTTATGATATTGCTATATTAACTGATTCATATGCTATGATAATATATTCAACGAAATTAGGAAACTATGTGAATGTGAAATAGAAATAAAAATTATGATAAATAGATTTTTTTTCGTAATCGATTATCAATCATTCAAATATAGTTATGTATCTTTTTTAATTTTTATTA] consensusID : consensus_31#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 466 fasta sequence [TTGCAATTTCAACGAATAGATGCAAATTTTAATAATAGAAGATGCTACCAATTAAATAAATTTAAAATTATTAATGGAGAACTTCAGAGAAACAATAAGATTTCATAAAATCCAAATGAAAATATTATCGCGAAACTAAATGGCATTCAAAAAAAATTATCAATGTGAATTTTTATAGAATTTAAAAAAAGGCTATTAATATGGATCTTTATAGGATTCAAAGGAGACTCGATACGAGTCTTTTTAGGATTCAAAGATTATCAACGTAGGATTCAGAAGAAACTATCAACACAGGATTTCGAAGGATTTAAAGAAGACTATCAACGCGGGACTTCATGAAATTCAGAAGATCGACTCAGGATTTCGTGAGATTCGGAAAAGNTTACTGACGCGGGACTTCGTGGGATTCAAAAAACTATCAACGCGGGACTTCGTGGGATTCGAAGAAGNCTATCAACGTGGGACT] [+] EMBL BI516871 [TTGCAATTTCAACGAATAGATGCAAATTTTAATAATAGAAGATGCTACCAATTAAATAAATTTAAAATTATTAATGGAGAACTTCAGAGAAACAATAAGATTTCATAAAATCCAAATGAAAATATTATCGCGAAACTAAATGGCATTCAAAAAAAATTATCAATGTGAATTTTTATAGAATTTAAAAAAAGGCTATTAATATGGATCTTTATAGGATTCAAAGGAGACTCGATACGAGTCTTTTTAGGATTCAAAGATTATCAACGTAGGATTCAGAAGAAACTATCAACACAGGATTTCGAAGGATTTAAAGAAGACTATCAACGCGGGACTTCATGAAATTCAGAAGATCGACTCAGGATTTCGTGAGATTCGGAAAAGNTTACTGACGCGGGACTTCGTGGGATTCAAAAAACTATCAACGCGGGACTTCGTGGGATTCGAAGAAGNCTATCAACGTGGGACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_31#0 -----ACTTCGTGGGATTCAAAAAACTATCAACG-CGGGACTTCGTGGGATTCGAAGAAG 54 consensus_31#1 TTGCAATTTCAACGAATAGATGCAAATTTTAATAATAGAAGATGCTACCAATTAAATAAA 60 * *** * ** * ** * * ** * * * * * * ** ** consensus_31#0 ACTATCNNNGTGGGACTTCGTGGGATTCAAAGAAGACTATCAACGCCGGACTGTGGGATT 114 consensus_31#1 TTTAAAATTATTAA---TGGAGAACTTCAGAGAAA-----CAATAAGATTTCATAAAATC 112 ** * * * * **** **** *** * ** consensus_31#0 CCAAGAAGACTATCAACGTGGGACTTCGTGGGATTCAAAGAAGAGTATCGACGTGGGACT 174 consensus_31#1 CAAATGAAAATATTATCGCGAAACTAAATGGCATTCAAAAAAAATTATCAATGTGAATTT 172 * ** * * *** * ** * *** *** ******* ** * **** * *** * consensus_31#0 TCGTGGGATTCAAAGAG-GACTATCGACGTGGGACTTCGTGGGATTCAAAGAAGACTATC 233 consensus_31#1 TTATAGAATTTAAAAAAAGGCTATTAATATGGATCTTTATAGGATTCAAAGGAGACT--C 230 * * * *** *** * * **** * *** *** * ********** ***** * consensus_31#0 GACGCGGGACTTCGTGGGATTCAAAGAAGACTATCAATGCCGGACTGTGGGATTCAAAGA 293 consensus_31#1 GATACGAGTCTTTTTAGGATTCAAA---GATTATCAACG--------TAGGATTCAGAAG 279 ** ** * *** * ********* ** ****** * * ******* * consensus_31#0 AGACTATCAACGCTGGAC--CGAGGGATTCAAAGAAGACTATCTATCAACGTGGGACTTC 351 consensus_31#1 AAACTATCAACACAGGATTTCGAAGGATTTAAAGAAGACT----ATCAACGCGGGACTTC 335 * ********* * *** *** ***** ********** ******* ******** consensus_31#0 GTGGGATTCAAAGAAGACTATCAACATCGGACTGTGGGATTCAAAGAAAATTATCAACGT 411 consensus_31#1 ATGAAATTCAGAAGATCGACTCAGGATT---TCGTGAGATTCGGAAAAGNTTACTGACGC 392 ** ***** * * *** ** *** ***** * ** *** *** consensus_31#0 GGGACTTCGTGGGATTCAAAGAAGATTATGAACGCAGAACTTTGTGGGATTCAAAGAAGA 471 consensus_31#1 GGGACTTCGTGGGATTCAAAAAA--CTATCAACGCGGGACTTCGTGGGATTCGAAGAAGN 450 ******************** ** *** ***** * **** ********* ****** consensus_31#0 TCATCAATGCGGTTTAATGAAATTTCATGATAAATTATTAATGCGGGATTTTATAGGATT 531 consensus_31#1 CTATCAACGTGGGACT-------------------------------------------- 466 ***** * ** consensus_31#0 GTAGGAAAGCGCCTTCGTATTCAAAAAAAGACTTCGATAAAATTTGTAATCCAAAAAACC 591 consensus_31#1 ------------------------------------------------------------ consensus_31#0 GTCATTGCCAGATATCATGAAATTCAAAAGGAATATTAAAAAAAGATTTAATGAAATTTA 651 consensus_31#1 ------------------------------------------------------------ consensus_31#0 AATATTAGCGAGATAAATTTTTAAAAATATAAAAAATTATTGGAATTAGAAACAAATCTC 711 consensus_31#1 ------------------------------------------------------------ consensus_31#0 AAATTCTGATATTTGAAACTTATTACCAAATACAAGTGTGTTACTTAATGAATTTTCTAA 771 consensus_31#1 ------------------------------------------------------------ consensus_31#0 AGAAAGGATCTGCTTATTTCTATTTTATTCACATATTTATGATATTGCTATATTAACTGA 831 consensus_31#1 ------------------------------------------------------------ consensus_31#0 TTCATATGCTATGATAATATATTCAACGAAATTAGGAAACTATGTGAATGTGAAATAGAA 891 consensus_31#1 ------------------------------------------------------------ consensus_31#0 ATAAAAATTATGATAAATAGATTTTTTTTCGTAATCGATTATCAATCATTCAAATATAGT 951 consensus_31#1 ------------------------------------------------------------ consensus_31#0 TATGTATCTTTTTTAATTTTTATTA 976 consensus_31#1 ------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |