Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 334 cluster # 334       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_334#0 length = 550 sequences # 1  
consensus_334#1 length = 547 sequences # 2  
consensus_334#2 length = 514 sequences # 2  

consensusID : consensus_334#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 550
fasta sequence
                              [TTTTTTTTTTTTTAATTTAAAAATTAACTTTATTTACAAATTATTTACAAAATACTAATTTACATTAATTATTTAAAAATATTAATTTAAATATACTAATTTTTTTAATAAATCAATCGATTGCACAGCCTTGGAAACACGCGCAAAAGATGATTTCGTGGCTTGTTGGACAAGCAGTCTGGGCTTGGGCCAAAGCTGGAATTTGGGAATCCGAGTACGCATATGCTTATCCAAACGAGGATGAAGATATCCATGAAGAATATCAAGATAATGATCAAGAGAAACCACCAATTACTGAGAAATTATTCGATCAAAAAGTTTTGATCAATCGAACAAGACCGGAAGCTTGTGATCAAGAGGTAAATATTATGATATATCAACTACCATTATATTCTTTTCAATTTTTTCAATTCAAATTATATTATATCTTTCTTTTAATTCTCTTAGGTATATTTGTATTTACGAAATGCATCTTTCGACATGTTCGACATAGATTCAGATGTAAAGAAAGATTGTNTGAGGCCATATATCGTTCAACCGGTAAATTACA]

[+] EMBL BI504332             [TTTTTTTTTTTTTAATTTAAAAATTAACTTTATTTACAAATTATTTACAAAATACTAATTTACATTAATTATTTAAAAATATTAATTTAAATATACTAATTTTTTTAATAAATCAATCGATTGCACAGCCTTGGAAACACGCGCAAAAGATGATTTCGTGGCTTGTTGGACAAGCAGTCTGGGCTTGGGCCAAAGCTGGAATTTGGGAATCCGAGTACGCATATGCTTATCCAAACGAGGATGAAGATATCCATGAAGAATATCAAGATAATGATCAAGAGAAACCACCAATTACTGAGAAATTATTCGATCAAAAAGTTTTGATCAATCGAACAAGACCGGAAGCTTGTGATCAAGAGGTAAATATTATGATATATCAACTACCATTATATTCTTTTCAATTTTTTCAATTCAAATTATATTATATCTTTCTTTTAATTCTCTTAGGTATATTTGTATTTACGAAATGCATCTTTCGACATGTTCGACATAGATTCAGATGTAAAGAAAGATTGTNTGAGGCCATATATCGTTCAACCGGTAAATTACA]


>consensus_334#0 TTTTTTTTTTTTTAATTTAAAAATTAACTTTATTTACAAATTATTTACAAAATACTAATT TACATTAATTATTTAAAAATATTAATTTAAATATACTAATTTTTTTAATAAATCAATCGA TTGCACAGCCTTGGAAACACGCGCAAAAGATGATTTCGTGGCTTGTTGGACAAGCAGTCT GGGCTTGGGCCAAAGCTGGAATTTGGGAATCCGAGTACGCATATGCTTATCCAAACGAGG ATGAAGATATCCATGAAGAATATCAAGATAATGATCAAGAGAAACCACCAATTACTGAGA AATTATTCGATCAAAAAGTTTTGATCAATCGAACAAGACCGGAAGCTTGTGATCAAGAGG TAAATATTATGATATATCAACTACCATTATATTCTTTTCAATTTTTTCAATTCAAATTAT ATTATATCTTTCTTTTAATTCTCTTAGGTATATTTGTATTTACGAAATGCATCTTTCGAC ATGTTCGACATAGATTCAGATGTAAAGAAAGATTGTNTGAGGCCATATATCGTTCAACCG GTAAATTACA



consensusID : consensus_334#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 547
fasta sequence
                              [TTTTTTTTTTGATACTGAAAGAGCAAAAGCGCCAGTGGCGGTTGTAGGTTTCCAATTTCAACACACCGCTCTTCAGGGTCTCTTCCAGAACATCACGTTCAGTTGCGAGGGTTCAGGGAAATGCCACACACATTGTGGTGCAGATAATTGGGCTTGCTATTTGATTGATAATAATGGATACGTAATCGCAGCCAAAGATAAATCTGACGCAGGAAAATTCTTCGGTGAACTGAGAGGACCAATCATGTCTAGTTTAGTAAAAGAAGGTGTTTTCGAAAGAATCAGAATATTCGATTATCAAGCAGTTTGTTTCAAGAGTACACAAACTAGTAATGATGGAAGTATTTTATTGGCGCCTTGGAAACACGCGCAAAAGATGATTTCGTGGCTTATTGGACAAGCAGTCTGGGCTTGGGCCAAAGCTGGAATTTGGGAATCCGAGTACGCATATGCTTATCCAAACGAGGATGAAGATATCCATGAAGAATATCAAGATAATGATCAAGAGAAACCACCAATTACTGAGAAATTATTCGATCAAAAAGTT]

[-] EMBL BI506780             [TTTTTTTTTTGATACTGAAAGAGCAAAAGCGCCAGTGGCGGTTGTAGGTTTCCAATTTCAACACACCGCTCTTCAGGGTCTCTTCCAGAACATCACGTTCAGTTGCGAGGGTTCAGGGAAATGCCACACACATTGTGGTGCAGATAATTGGGCTTGCTATTTGATTGATAATAATGGATACGTAATCGCAGCCAAAGATAAATCTGATGCAGGAAAATTCTTCGGTGAACTGAGAGGACCAATCATGTCT                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BI504645             [                                                            ACACACCGCTCTTCAGGGTCTCTTCCAGAACATCACGTTCAGTTGCGAGGGTTCAGGGAAATGCCACACACATTGTGGTGCAGATAATTGGGCTTGCTATTTGATTGATAATAATGGATACGTAATCGCAGCCAAAGATAAATCTGACGCAGGAAAATTCTTCGGTGAACTGAGAGGACCAATCATGTCTAGTTTAGTAAAAGAAGGTGTTTTCGAAAGAATCAGAATATTCGATTATCAAGCAGTTTGTTTCAAGAGTACACAAACTAGTAATGATGGAAGTATTTTATTGGCGCCTTGGAAACACGCGCAAAAGATGATTTCGTGGCTTATTGGACAAGCAGTCTGGGCTTGGGCCAAAGCTGGAATTTGGGAATCCGAGTACGCATATGCTTATCCAAACGAGGATGAAGATATCCATGAAGAATATCAAGATAATGATCAAGAGAAACCACCAATTACTGAGAAATTATTCGATCAAAAAGTT]


>consensus_334#1 TTTTTTTTTTGATACTGAAAGAGCAAAAGCGCCAGTGGCGGTTGTAGGTTTCCAATTTCA ACACACCGCTCTTCAGGGTCTCTTCCAGAACATCACGTTCAGTTGCGAGGGTTCAGGGAA ATGCCACACACATTGTGGTGCAGATAATTGGGCTTGCTATTTGATTGATAATAATGGATA CGTAATCGCAGCCAAAGATAAATCTGACGCAGGAAAATTCTTCGGTGAACTGAGAGGACC AATCATGTCTAGTTTAGTAAAAGAAGGTGTTTTCGAAAGAATCAGAATATTCGATTATCA AGCAGTTTGTTTCAAGAGTACACAAACTAGTAATGATGGAAGTATTTTATTGGCGCCTTG GAAACACGCGCAAAAGATGATTTCGTGGCTTATTGGACAAGCAGTCTGGGCTTGGGCCAA AGCTGGAATTTGGGAATCCGAGTACGCATATGCTTATCCAAACGAGGATGAAGATATCCA TGAAGAATATCAAGATAATGATCAAGAGAAACCACCAATTACTGAGAAATTATTCGATCA AAAAGTT



consensusID : consensus_334#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 514
fasta sequence
                              [AACGAGGATGAAGATATCCATGAAGAATATCAAGATAATGATCAAGAGAAACCACCAATTACTGAGAAATTATTCGATCAAAAAGTTTTGATCAATCGAACAAGACCGGAAGCTTGTGATCAAGAGGTATATTTGTATTTACGAAATGCATCTTTCGACATGTTCGACATAGATTCAGATGTAAAGAAAGATTGTATGAGGCCATATATCGTTCAANCGGTAAATTACAGCAATATGCTTCTTCTTGTCGTTAACACAGCCTGCACAGAGACAACTATGCCTCCTTTGAGCGTCATTCCACAAGAAATAATATATGAGAATAACTCGCTAGTATGTCAGAAAGCACTCATTTCCTTAAAACGGAAGAGACCTCAATCGTGTATTCGCAGTCATTCGAGGGAGAGCGAAATTAAAGATCTTTGCGGTTTGGCTTCGAATGTGACACCAAATATCTACCTCTTTTTTCTTTTGTCTATAACCTGTTCTCTGATTCAACGAATTGACCTTGGTCAAC]

[+] EMBL BI503563             [AACGAGGATGAAGATATCCATGAAGAATATCAAGATAATGATCAAGAGAAACCACCAATTACTGAGAAATTATTCGATCAAAAAGTTTTGATCAATCGAACAAGACCGGAAGCTTGTGATCAAGAGGTATATTTGTATTTACGAAATGCATCTTTCGACATGTTCGATATAGATTCAGATGTAAAGAAAGATTGTATGAGGCCATATATCATTCAACCGGTAAATTACAGCAATATGCTTCTTCTTGTCGTTAACACAGCCTGCACAGAGACAACTATGCCTCCTTTGAGCGTCATTCCACAAGAAATAATATATGAGAATAACTCGCTAGTATGTCAGAAAGCACTCATTTCCTTAAAACGGAAGAGACCTCAATCGTGTATTCGCAGTCATTCGAGGGAGAGCGAAATTAAAGATCTTTGCGGTTTGGCTTCGAATGTGACACCAAATATCTACCTCTTTTTTCTTTTGTCTATAACCTGTTCTCTGATTCAACGAATTGACCTTGGTCAAC]
[-] EMBL BI507318             [                  CATGAAGAATATCAAGATAATGATCAAGAGAAACCACCAATTACTGAGAAATTATTCGATCAAAAAGTTTTGATCAATCGAACAAGACCGGAAGCTTGTGATCAAGAGGTATATTTGTATTTACGAAATGCATCTTTCGACATGTTCGACATAGATTCAGATGTAAAGAAAGATTGTATGAGGCCATATATCGTTCAANCGGTAAATTACAGCAATATGCTTCTTCTTGTCGTTAACACAGCCTGCACAGAGACAACTATGCCTCCTTTGAGCGTCATTCCACAAGAAATAATATATGAGAATAACTCGCTAGTATGTCAGAAAGCACTCATTTCCTTAAAACGGAAGAGACCTCAATCGTGTATTCGCAGTCATTCGAGGGAGAGCGAAATTAAAGATCTTTGCGGTTTGGCTTCGAATGTGACACCAAATATCTACCTCTTTTTTCTTTTG                                           ]


>consensus_334#2 AACGAGGATGAAGATATCCATGAAGAATATCAAGATAATGATCAAGAGAAACCACCAATT ACTGAGAAATTATTCGATCAAAAAGTTTTGATCAATCGAACAAGACCGGAAGCTTGTGAT CAAGAGGTATATTTGTATTTACGAAATGCATCTTTCGACATGTTCGACATAGATTCAGAT GTAAAGAAAGATTGTATGAGGCCATATATCGTTCAANCGGTAAATTACAGCAATATGCTT CTTCTTGTCGTTAACACAGCCTGCACAGAGACAACTATGCCTCCTTTGAGCGTCATTCCA CAAGAAATAATATATGAGAATAACTCGCTAGTATGTCAGAAAGCACTCATTTCCTTAAAA CGGAAGAGACCTCAATCGTGTATTCGCAGTCATTCGAGGGAGAGCGAAATTAAAGATCTT TGCGGTTTGGCTTCGAATGTGACACCAAATATCTACCTCTTTTTTCTTTTGTCTATAACC TGTTCTCTGATTCAACGAATTGACCTTGGTCAAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_334#0      TTTTTTTTTTTTTAATTTAAAAATTAACTTTATTTACAAATTATTTACAAAATACTAATT 60
consensus_334#2      ---------------AACGAGGATGAAGAT-ATCCATGAAGAATAT-CAAGATAATGATC 43
consensus_334#1      -TTTTTTTTTTGATACTGAAAGAGCAAAAGCGCCAGTGGCGGTTGT--AGGTTTCCAATT 57
                                        *  *  **                * *  *   *    ** 

consensus_334#0      TACATTAATTATTTAAAAATATTAATTTAAATATACTAATTTTTTTAATAAATCAATCGA 120
consensus_334#2      AAGAGAAACCACCAATTACTGAGAAATTATTCGATCAAAAAGTTTTGATCAATCGAACAA 103
consensus_334#1      TCAACACACCGCTCTTCA----GGGTCTCTTC---CAGAACATCACGTTCAGTTGCGAGG 110
                        *   *         *         *       *  *   *     * * *       

consensus_334#0      TTGCACAGCCTTGGAA-ACAC---GCGCAAAAGATGATTTCGTGGCTTG--TTGGACAAG 174
consensus_334#2      GACCGGAAGCTTGTGA-TCAA---GAGGTATATTTGTATTTACGAAATGCATCTTTCGAC 159
consensus_334#1      GTTCAGGGAAATGCCACACACATTGTGGTGCAGATAATTGGGCTTGCTATTTGATTGATA 170
                        *       **  *  **    * *    *  *   *        *   *        

consensus_334#0      CAGTCTGGGCTTGGGCCAAAGCTGGAATTTGGGAATCCGAGTACGCATAT-GCTTATCCA 233
consensus_334#2      ATGTTCGACATAGATTCAGATGTAAAGAAAGATTGTATGAGGCCATATATCGTTCAANCG 219
consensus_334#1      ATAATGGATACGTAATCGCAGCCAAAGATAAATCTGACGCAGGAAAATTC--TTCGGTGA 228
                           *         *  *     *            *       **     *      

consensus_334#0      AACGAGGATGAAGAT-ATCCATGAAG--AATATCAAGATAA--TGATCAAGAGAAACCAC 288
consensus_334#2      GTAAATTACAGCAAT-ATGCTTCTTCTTGTCGTTAACACAGCCTGCACAGAGACAACTAT 278
consensus_334#1      ACTGAGAGGACCAATCATGTCTAGTTTAGTAAAAGAAGGTGTTTTCGAAAGAATCAGAAT 288
                         *        ** **   *             *       *    *      *  * 

consensus_334#0      CAATTACTGAGAAATTATTCGATCAAAAAGTTTTGATCAATCGAACAAGACCGGAAGCTT 348
consensus_334#2      GCCTCCTTTGAGCGTCATTCCACAAGAAA----TAATATATGAGAATAACTCGCTAGTAT 334
consensus_334#1      ATTCGATTATCAAGCAGTTTGTTTCAAGAG---TACACAAACTAGTAATGATGGAAGTAT 345
                            *         **       * *    *     *       *    *  **  *

consensus_334#0      GTGATCAAGAGGTAAATATTATGATATATCAACTACCATTATATTCTTTTC----AATTT 404
consensus_334#2      GTCAGAAAGCACTCATTTCCTTAAAACGGAAGAGACCTCAATCGTGTATTCGC--AGTCA 392
consensus_334#1      TTTATTGGCGCCTTGGAAACACG-CGCAAAAGATGATTTCGTGGCTTATTGGACAAGCAG 404
                      * *        *                 *          *    * **     *    

consensus_334#0      TTTCAATTCAAATTATATTATATCTTTCTTTTAATTCTCTTAGG-TATATTTGTATTTAC 463
consensus_334#2      TTCGAGGGAGAGCGAAATTAAAGATCTTTGCGGTTTGGCTTCGAATGTGACACCAAATAT 452
consensus_334#1      TCTGGGCTTGGGCCAAAGC-TGGAATTTGGGAATCCGAGTACGCATATGCTTATCCAAAC 463
                     *             * *         *            *  *  * *          * 

consensus_334#0      GAAATGCATCTTTCGAC-ATGTTCGACATAGATTCAGATGTAAAGAAAGATTGTNTGAGG 522
consensus_334#2      CTACCTCTTTTTTCTTTTGTCTATAACCTGTTCTCTGATTCAACGAA---TTGACCTTGG 509
consensus_334#1      GAGGATGAAGATATCCATGAAGAATATCAAGATAATGATCAAGAGAAAC-CACCAATTAC 522
                                *             *          ***  *  ***             

consensus_334#0      CCATATATCGTTCAACCGGTAAATTACA 550
consensus_334#2      TCAAC----------------------- 514
consensus_334#1      TGAGAAATTATTCGATCAAAAAGTT--- 547
                       *                         




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)