These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_338#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1016 fasta sequence [ACGGTATAAATTTTATAATGTTAATATTACAATCCAATGCGCGTTTGAAACATTTATAAAGAATAAAAATCGAAAACGTTCACACACGAGATATAGAAACCGACCGTAGGACGGTCTCTTCTGTAAAACCATCGACATTTTATTTTAAACGCACGAATTTCCGAAAAGCTTCATTCCAAAGCTTTCCGAGGAGAGAAAGAGGGGGAAAAAAAGAAGAAAAAGAAAACATTATGTAAAGGGGAAGGGAAAAGAAGTAAAAAAAAAAAAAACCATTGAAAGCTTTAACTTTGACTAAACTAACTTTAAAAAAAAGGGTATATAGCGATATAATAATAATAGCAGTGAGTGCTGCTAACCAGTTGTGTGAATGGCGGATGATTGGCNNATTGATTCTGCGCGAAATCATTACCGACGATCGATAAAAATGCGTTCATATATATATATGATATATACAG----ATATATATATATATATATATATAGTTTAATCTACCTCGATGTAATACACTCGTGTTGACAAGCATCGAAATATCCAGTTCTTTCTTTACGATTTCGCGGATATATATATCTGTTTCGCGCAATATCCCGCCAATCTTCGCGTTATTGTAAACTTATTGTATATTACTTATACATATATACATACATATATATGTATATATACATATACATAGATGTGTGCATATGTGAAAATGCAAAGGAACACTTGTTTTTCTCAAAGAAAGCAGATCGAGTGGAGATTGTACCTTTATACGTATTTCATTGTTCGCGTGCATCGTTCGCGTCGCGTCGAGAACACGGACGACGATTGGCCAAAAGTATATAAGTATATGAAATCGAACGTTTGTCGAATGGGGAACCAGTCCTTCTTTATCGATCGAAACGACATTTTTATCGACGAAAAAAAAAAAAGAAAGAAACATTGGAGGAAACGTATTTCTATAATAAGAAGCGCGTTTACGAACAATAATNNTCATTCATAACCATTCACGACTGACGAACGAATTTCTTCTCGTAGATAAA] [+] EMBL BI509348 [ACGGTATAAATTTTATAATGTTAATATTACAATCCAATGCGCGTTTGAAACATTTATAAAGAATAAAAATCGAAAACGTTCACACACGAGATATAGAAACCGACCGTAGGACGGTCTCTTCTGTAAAACCATCGACATTTTATTTTAAACGCACGAATTTCCGAAAAGCTTCATTCCAAAGCTTTCCGAGGAGAGAAAGAGGGGGAAAAAAAGAAGAAAAAGAAAACATTATGTAAAGGGGAAGGGAAAAGAAGTAAAAAAAAAAAAAACCATTGAAAGCTTTAACTTTGACTAAACTAACTTTAAAAAAAAGGGTATATAGCGATATAATAATAATAGCAGTGAGTGCTGCTAACCAGTTGTGTGAATGGCGGATGATTGGCGGATTGATTCTGCGCGAAATCATTACCGACGATCGATAAAAATGCGTTCATATATATATATGATATATACAG ATATATATATATATATATATATAGTTTAATCTACCTCGATGTAATACACTCGTGTTGACAAGCATCGAAATATCCAGTTCT ] [+] EMBL BI503382 [ AAGCTTTAACTTTGACTAAACTAACTTTAAAAAAAAGGGTATATAGCGATATAATAATAATAGCAGTGAGTGCTGCTAACCAGTTGTGTGAATGGCGGATGATTGGCNNATTGATTCTGCGCGAAATCATTACCGACGATCGATAAAAATGCGNTCATATATATATATGATATATACAG ATATATAT ] [+] EMBL BI509353 [ ATTCTGCGCGAAATCATTACCGACGATCGATAAAAATGCGTTCATATATATATATGATATATACAG ATATATATATATATATATATATAGTTTAATCTACCTCGATGTAATACACTCGTGTTGACAAGCATCGAAATATCCAGTTCTTTCTTTACGATTTCGCGGATATATATATCTGTTTCGCGCAATATCCCGCCAATCTTCGCGTTATTGTAAACTTATTGTATATTACTTATACATATATACATACATATATATGTATATATACATATACATAGATGTGTGCATATGTGAAAATGCAAAGGAACACTTGTTTTTCTCAAAGAAAGCAGATCGAGTGGAGATTGTACCTTTATACGTATTTCATTGTTCGCGTGCATCGTTCGCGTCGCGTCGAGAACACGGACGACGATTGGCCAAAAGTATATAAGTATATGAAATCGAACGTTTGTCGAATGGGGAACCAGTCCTTCTTTATCGATCGAAACGACATTTTTATCGACG AAAAAAAAAGAAAGAAACATTGAAGGAAACGTATTTCTATAATAAGAAGCGCGTTTACGAACAATAATNNTCATTCATAACCATTCACGACTGACGAACGAATTTC ] [+] EMBL BI505334 [ ttcatATATATATATATGATATATACAGATATATATATATATATATATATATATAGTTTAATCTACCTCGATGTAATACACTCGTGTTGGCAAGCATCGAAATATCCAGTTCTTTCTTTACGATTTCGCGGATATATATATCTGTTTCGCGCAATATCCCGCCAATCTTCGCGTTATTGTAAACTTATTGTATATTACTTATACATATATACATACATATATATGTATATATACATATACATAGATGTGTGCATATGTGAAAATGCAAAGGAACACTTGTTTTTCTCAAAGAAAGCAGATCGAGTGGAGATTGTACCTTTATACGTATTTCATTGTTCGCGTGCATCGTTCGCGTCGCGTCGAGAACACGGACGACGATTGGCCAAAACTATATAAGTATATGAAATCGAACGTTTGTCGAATGGGGAACCAGTCCTTCTTTATCGATCGAAACGACATTTTTATCGACGAAAAAAAAAAAAGAAAGAAACATTGGAGGAAACGTATTTCTATAATAAGAAGCGCGTTTACGAACAATAATGTTCATTCATAACCATTCACGACTGACGAACGAATTTCTTCTCGTAGATAAA] consensusID : consensus_338#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 532 fasta sequence [CGAAATCATTACCGACGATCGATAAAAATGCGTTCATATATATATATATGATATATACAGATATATATATATATATATATATATATATATATATATATATATATATATATATATANNNTAATCTACCTCGATGTAATACACTCGTGTNNGCAAGCATAGAAATATCCAGTTCTTTCTTTACGATTTCGCGGATATATATATCTGTTTCGCGCAATATCCCGCCAATCTTCGCGTTATTGTAAACTTATTGTATATTACTTATACATATATACATACATATATATGTATATATACATATACATAGATGTGTGCATATGTGAAAATGCAAAGGAACACTTGTTTTTCTCAAAGAAAGCAGATCGAGTGGAGATTGTACCTTTATACGTATTTCATTNTTCGCGTGCATCGTTCGCGTCGCGTCGAGAACACGGACGACGATTNNCCAAAAGTATATAAGTGAAATCGAACGTTTGTCGAATGGGGAACCAGTCCTNNTTTATCGATCGAAACGACATTTTTATCGACGAAAAAA] [+] EMBL BI505978 [CGAAATCATTACCGACGATCGATAAAAATGCGTTCATATATATATATATGATATATACAGATATATATATATATATATATATATATATATATATATATATATATATATATATATANNNTAATCTACCTCGATGTAATACACTCGTGTNNGCAAGCATAGAAATATCCAGTTCTTTCTTTACGATTTCGCGGATATATATATCTGTTTCGCGCAATATCCCGCCAATCTTCGCGTTATTGTAAACTTATTGTATATTACTTATACATATATACATACATATATATGTATATATACATATACATAGATGTGTGCATATGTGAAAATGCAAAGGAACACTTGTTTTTCTCAAAGAAAGCAGATCGAGTGGAGATTGTACCTTTATACGTATTTCATTNTTCGCGTGCATCGTTCGCGTCGCGTCGAGAACACGGACGACGATTNNCCAAAAGTATATAAGTGAAATCGAACGTTTGTCGAATGGGGAACCAGTCCTNNTTTATCGATCGAAACGACATTTTTATCGACGAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_338#0 ACGGTATAAATTTTATAATGTTAATATTACAATCCAATGCGCGTTTGAAACATTTATAAA 60 consensus_338#1 ------------------------------------------------------------ consensus_338#0 GAATAAAAATCGAAAACGTTCACACACGAGATATAGAAACCGACCGTAGGACGGTCTCTT 120 consensus_338#1 ------------------------------------------------------------ consensus_338#0 CTGTAAAACCATCGACATTTTATTTTAAACGCACGAATTTCCGAAAAGCTTCATTCCAAA 180 consensus_338#1 ------------------------------------------------------------ consensus_338#0 GCTTTCCGAGGAGAGAAAGAGGGGGAAAAAAAGAAGAAAAAGAAAACATTATGTAAAGGG 240 consensus_338#1 ------------------------------------------------------------ consensus_338#0 GAAGGGAAAAGAAGTAAAAAAAAAAAAAACCATTGAAAGCTTTAACTTTGACTAAACTAA 300 consensus_338#1 ------------------------------------------------------------ consensus_338#0 CTTTAAAAAAAAGGGTATATAGCGATATAATAATAATAGCAGTGAGTGCTGCTAACCAGT 360 consensus_338#1 ------------------------------------------------------------ consensus_338#0 TGTGTGAATGGCGGATGATTGGCNNATTGATTCTGCGCGAAATCATTACCGACGATCGAT 420 consensus_338#1 CGAAATCATTACCGACGATCGATAAA---AATGCGTTC-ATATATATATATATGATATAT 56 * ** * ** *** * * * * * * * ** ** * *** ** consensus_338#0 AAAAATGCGTTCATATATATATATG-ATATATACAGATATATATATATATATATATATAG 479 consensus_338#1 ACAGATATATATATATATATATATATATATATATATATATATATATATATATATATATAN 116 * * ** * ************ ******* * *********************** consensus_338#0 TTTAATCTACCTCGATGTAATACACTCGTGTTGACAAGCATCGAAATATCCAGTTCTTTC 539 consensus_338#1 NNTAATCTACCTCGATGTAATACACTCGTGTNNGCAAGCATAGAAATATCCAGTTCTTTC 176 ***************************** ******* ****************** consensus_338#0 TTTACGATTTCGCGGATATATATATCTGTTTCGCGCAATATCCCGCCAATCTTCGCGTTA 599 consensus_338#1 TTTACGATTTCGCGGATATATATATCTGTTTCGCGCAATATCCCGCCAATCTTCGCGTTA 236 ************************************************************ consensus_338#0 TTGTAAACTTATTGTATATTACTTATACATATATACATACATATATATGTATATATACAT 659 consensus_338#1 TTGTAAACTTATTGTATATTACTTATACATATATACATACATATATATGTATATATACAT 296 ************************************************************ consensus_338#0 ATACATAGATGTGTGCATATGTGAAAATGCAAAGGAACACTTGTTTTTCTCAAAGAAAGC 719 consensus_338#1 ATACATAGATGTGTGCATATGTGAAAATGCAAAGGAACACTTGTTTTTCTCAAAGAAAGC 356 ************************************************************ consensus_338#0 AGATCGAGTGGAGATTGTACCTTTATACGTATTTCATTGTTCGCGTGCATCGTTCGCGTC 779 consensus_338#1 AGATCGAGTGGAGATTGTACCTTTATACGTATTTCATTNTTCGCGTGCATCGTTCGCGTC 416 ************************************** ********************* consensus_338#0 GCGTCGAGAACACGGACGACGATTGGCCAAAAGTATATAAGTATATGAAATCGAACGTTT 839 consensus_338#1 GCGTCGAGAACACGGACGACGATTNNCCAAAAGTATATAAGT----GAAATCGAACGTTT 472 ************************ **************** ************** consensus_338#0 GTCGAATGGGGAACCAGTCCTTCTTTATCGATCGAAACGACATTTTTATCGACGAAAAAA 899 consensus_338#1 GTCGAATGGGGAACCAGTCCTNNTTTATCGATCGAAACGACATTTTTATCGACGAAAAAA 532 ********************* ************************************* consensus_338#0 AAAAAAGAAAGAAACATTGGAGGAAACGTATTTCTATAATAAGAAGCGCGTTTACGAACA 959 consensus_338#1 ------------------------------------------------------------ consensus_338#0 ATAATNNTCATTCATAACCATTCACGACTGACGAACGAATTTCTTCTCGTAGATAAA 1016 consensus_338#1 --------------------------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |