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Apis mellifera
cluster # 338 cluster # 338       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_338#0 length = 1016 sequences # 4  
consensus_338#1 length = 532 sequences # 1  

consensusID : consensus_338#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1016
fasta sequence
                              [ACGGTATAAATTTTATAATGTTAATATTACAATCCAATGCGCGTTTGAAACATTTATAAAGAATAAAAATCGAAAACGTTCACACACGAGATATAGAAACCGACCGTAGGACGGTCTCTTCTGTAAAACCATCGACATTTTATTTTAAACGCACGAATTTCCGAAAAGCTTCATTCCAAAGCTTTCCGAGGAGAGAAAGAGGGGGAAAAAAAGAAGAAAAAGAAAACATTATGTAAAGGGGAAGGGAAAAGAAGTAAAAAAAAAAAAAACCATTGAAAGCTTTAACTTTGACTAAACTAACTTTAAAAAAAAGGGTATATAGCGATATAATAATAATAGCAGTGAGTGCTGCTAACCAGTTGTGTGAATGGCGGATGATTGGCNNATTGATTCTGCGCGAAATCATTACCGACGATCGATAAAAATGCGTTCATATATATATATGATATATACAG----ATATATATATATATATATATATAGTTTAATCTACCTCGATGTAATACACTCGTGTTGACAAGCATCGAAATATCCAGTTCTTTCTTTACGATTTCGCGGATATATATATCTGTTTCGCGCAATATCCCGCCAATCTTCGCGTTATTGTAAACTTATTGTATATTACTTATACATATATACATACATATATATGTATATATACATATACATAGATGTGTGCATATGTGAAAATGCAAAGGAACACTTGTTTTTCTCAAAGAAAGCAGATCGAGTGGAGATTGTACCTTTATACGTATTTCATTGTTCGCGTGCATCGTTCGCGTCGCGTCGAGAACACGGACGACGATTGGCCAAAAGTATATAAGTATATGAAATCGAACGTTTGTCGAATGGGGAACCAGTCCTTCTTTATCGATCGAAACGACATTTTTATCGACGAAAAAAAAAAAAGAAAGAAACATTGGAGGAAACGTATTTCTATAATAAGAAGCGCGTTTACGAACAATAATNNTCATTCATAACCATTCACGACTGACGAACGAATTTCTTCTCGTAGATAAA]

[+] EMBL BI509348             [ACGGTATAAATTTTATAATGTTAATATTACAATCCAATGCGCGTTTGAAACATTTATAAAGAATAAAAATCGAAAACGTTCACACACGAGATATAGAAACCGACCGTAGGACGGTCTCTTCTGTAAAACCATCGACATTTTATTTTAAACGCACGAATTTCCGAAAAGCTTCATTCCAAAGCTTTCCGAGGAGAGAAAGAGGGGGAAAAAAAGAAGAAAAAGAAAACATTATGTAAAGGGGAAGGGAAAAGAAGTAAAAAAAAAAAAAACCATTGAAAGCTTTAACTTTGACTAAACTAACTTTAAAAAAAAGGGTATATAGCGATATAATAATAATAGCAGTGAGTGCTGCTAACCAGTTGTGTGAATGGCGGATGATTGGCGGATTGATTCTGCGCGAAATCATTACCGACGATCGATAAAAATGCGTTCATATATATATATGATATATACAG    ATATATATATATATATATATATAGTTTAATCTACCTCGATGTAATACACTCGTGTTGACAAGCATCGAAATATCCAGTTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BI503382             [                                                                                                                                                                                                                                                                                    AAGCTTTAACTTTGACTAAACTAACTTTAAAAAAAAGGGTATATAGCGATATAATAATAATAGCAGTGAGTGCTGCTAACCAGTTGTGTGAATGGCGGATGATTGGCNNATTGATTCTGCGCGAAATCATTACCGACGATCGATAAAAATGCGNTCATATATATATATGATATATACAG    ATATATAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BI509353             [                                                                                                                                                                                                                                                                                                                                                                                                     ATTCTGCGCGAAATCATTACCGACGATCGATAAAAATGCGTTCATATATATATATGATATATACAG    ATATATATATATATATATATATAGTTTAATCTACCTCGATGTAATACACTCGTGTTGACAAGCATCGAAATATCCAGTTCTTTCTTTACGATTTCGCGGATATATATATCTGTTTCGCGCAATATCCCGCCAATCTTCGCGTTATTGTAAACTTATTGTATATTACTTATACATATATACATACATATATATGTATATATACATATACATAGATGTGTGCATATGTGAAAATGCAAAGGAACACTTGTTTTTCTCAAAGAAAGCAGATCGAGTGGAGATTGTACCTTTATACGTATTTCATTGTTCGCGTGCATCGTTCGCGTCGCGTCGAGAACACGGACGACGATTGGCCAAAAGTATATAAGTATATGAAATCGAACGTTTGTCGAATGGGGAACCAGTCCTTCTTTATCGATCGAAACGACATTTTTATCGACG   AAAAAAAAAGAAAGAAACATTGAAGGAAACGTATTTCTATAATAAGAAGCGCGTTTACGAACAATAATNNTCATTCATAACCATTCACGACTGACGAACGAATTTC              ]
[+] EMBL BI505334             [                                                                                                                                                                                                                                                                                                                                                                                                                                           ttcatATATATATATATGATATATACAGATATATATATATATATATATATATATAGTTTAATCTACCTCGATGTAATACACTCGTGTTGGCAAGCATCGAAATATCCAGTTCTTTCTTTACGATTTCGCGGATATATATATCTGTTTCGCGCAATATCCCGCCAATCTTCGCGTTATTGTAAACTTATTGTATATTACTTATACATATATACATACATATATATGTATATATACATATACATAGATGTGTGCATATGTGAAAATGCAAAGGAACACTTGTTTTTCTCAAAGAAAGCAGATCGAGTGGAGATTGTACCTTTATACGTATTTCATTGTTCGCGTGCATCGTTCGCGTCGCGTCGAGAACACGGACGACGATTGGCCAAAACTATATAAGTATATGAAATCGAACGTTTGTCGAATGGGGAACCAGTCCTTCTTTATCGATCGAAACGACATTTTTATCGACGAAAAAAAAAAAAGAAAGAAACATTGGAGGAAACGTATTTCTATAATAAGAAGCGCGTTTACGAACAATAATGTTCATTCATAACCATTCACGACTGACGAACGAATTTCTTCTCGTAGATAAA]


>consensus_338#0 ACGGTATAAATTTTATAATGTTAATATTACAATCCAATGCGCGTTTGAAACATTTATAAA GAATAAAAATCGAAAACGTTCACACACGAGATATAGAAACCGACCGTAGGACGGTCTCTT CTGTAAAACCATCGACATTTTATTTTAAACGCACGAATTTCCGAAAAGCTTCATTCCAAA GCTTTCCGAGGAGAGAAAGAGGGGGAAAAAAAGAAGAAAAAGAAAACATTATGTAAAGGG GAAGGGAAAAGAAGTAAAAAAAAAAAAAACCATTGAAAGCTTTAACTTTGACTAAACTAA CTTTAAAAAAAAGGGTATATAGCGATATAATAATAATAGCAGTGAGTGCTGCTAACCAGT TGTGTGAATGGCGGATGATTGGCNNATTGATTCTGCGCGAAATCATTACCGACGATCGAT AAAAATGCGTTCATATATATATATGATATATACAGATATATATATATATATATATATAGT TTAATCTACCTCGATGTAATACACTCGTGTTGACAAGCATCGAAATATCCAGTTCTTTCT TTACGATTTCGCGGATATATATATCTGTTTCGCGCAATATCCCGCCAATCTTCGCGTTAT TGTAAACTTATTGTATATTACTTATACATATATACATACATATATATGTATATATACATA TACATAGATGTGTGCATATGTGAAAATGCAAAGGAACACTTGTTTTTCTCAAAGAAAGCA GATCGAGTGGAGATTGTACCTTTATACGTATTTCATTGTTCGCGTGCATCGTTCGCGTCG CGTCGAGAACACGGACGACGATTGGCCAAAAGTATATAAGTATATGAAATCGAACGTTTG TCGAATGGGGAACCAGTCCTTCTTTATCGATCGAAACGACATTTTTATCGACGAAAAAAA AAAAAGAAAGAAACATTGGAGGAAACGTATTTCTATAATAAGAAGCGCGTTTACGAACAA TAATNNTCATTCATAACCATTCACGACTGACGAACGAATTTCTTCTCGTAGATAAA



consensusID : consensus_338#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 532
fasta sequence
                              [CGAAATCATTACCGACGATCGATAAAAATGCGTTCATATATATATATATGATATATACAGATATATATATATATATATATATATATATATATATATATATATATATATATATATANNNTAATCTACCTCGATGTAATACACTCGTGTNNGCAAGCATAGAAATATCCAGTTCTTTCTTTACGATTTCGCGGATATATATATCTGTTTCGCGCAATATCCCGCCAATCTTCGCGTTATTGTAAACTTATTGTATATTACTTATACATATATACATACATATATATGTATATATACATATACATAGATGTGTGCATATGTGAAAATGCAAAGGAACACTTGTTTTTCTCAAAGAAAGCAGATCGAGTGGAGATTGTACCTTTATACGTATTTCATTNTTCGCGTGCATCGTTCGCGTCGCGTCGAGAACACGGACGACGATTNNCCAAAAGTATATAAGTGAAATCGAACGTTTGTCGAATGGGGAACCAGTCCTNNTTTATCGATCGAAACGACATTTTTATCGACGAAAAAA]

[+] EMBL BI505978             [CGAAATCATTACCGACGATCGATAAAAATGCGTTCATATATATATATATGATATATACAGATATATATATATATATATATATATATATATATATATATATATATATATATATATANNNTAATCTACCTCGATGTAATACACTCGTGTNNGCAAGCATAGAAATATCCAGTTCTTTCTTTACGATTTCGCGGATATATATATCTGTTTCGCGCAATATCCCGCCAATCTTCGCGTTATTGTAAACTTATTGTATATTACTTATACATATATACATACATATATATGTATATATACATATACATAGATGTGTGCATATGTGAAAATGCAAAGGAACACTTGTTTTTCTCAAAGAAAGCAGATCGAGTGGAGATTGTACCTTTATACGTATTTCATTNTTCGCGTGCATCGTTCGCGTCGCGTCGAGAACACGGACGACGATTNNCCAAAAGTATATAAGTGAAATCGAACGTTTGTCGAATGGGGAACCAGTCCTNNTTTATCGATCGAAACGACATTTTTATCGACGAAAAAA]


>consensus_338#1 CGAAATCATTACCGACGATCGATAAAAATGCGTTCATATATATATATATGATATATACAG ATATATATATATATATATATATATATATATATATATATATATATATATATATATANNNTA ATCTACCTCGATGTAATACACTCGTGTNNGCAAGCATAGAAATATCCAGTTCTTTCTTTA CGATTTCGCGGATATATATATCTGTTTCGCGCAATATCCCGCCAATCTTCGCGTTATTGT AAACTTATTGTATATTACTTATACATATATACATACATATATATGTATATATACATATAC ATAGATGTGTGCATATGTGAAAATGCAAAGGAACACTTGTTTTTCTCAAAGAAAGCAGAT CGAGTGGAGATTGTACCTTTATACGTATTTCATTNTTCGCGTGCATCGTTCGCGTCGCGT CGAGAACACGGACGACGATTNNCCAAAAGTATATAAGTGAAATCGAACGTTTGTCGAATG GGGAACCAGTCCTNNTTTATCGATCGAAACGACATTTTTATCGACGAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_338#0      ACGGTATAAATTTTATAATGTTAATATTACAATCCAATGCGCGTTTGAAACATTTATAAA 60
consensus_338#1      ------------------------------------------------------------
                                                                                 

consensus_338#0      GAATAAAAATCGAAAACGTTCACACACGAGATATAGAAACCGACCGTAGGACGGTCTCTT 120
consensus_338#1      ------------------------------------------------------------
                                                                                 

consensus_338#0      CTGTAAAACCATCGACATTTTATTTTAAACGCACGAATTTCCGAAAAGCTTCATTCCAAA 180
consensus_338#1      ------------------------------------------------------------
                                                                                 

consensus_338#0      GCTTTCCGAGGAGAGAAAGAGGGGGAAAAAAAGAAGAAAAAGAAAACATTATGTAAAGGG 240
consensus_338#1      ------------------------------------------------------------
                                                                                 

consensus_338#0      GAAGGGAAAAGAAGTAAAAAAAAAAAAAACCATTGAAAGCTTTAACTTTGACTAAACTAA 300
consensus_338#1      ------------------------------------------------------------
                                                                                 

consensus_338#0      CTTTAAAAAAAAGGGTATATAGCGATATAATAATAATAGCAGTGAGTGCTGCTAACCAGT 360
consensus_338#1      ------------------------------------------------------------
                                                                                 

consensus_338#0      TGTGTGAATGGCGGATGATTGGCNNATTGATTCTGCGCGAAATCATTACCGACGATCGAT 420
consensus_338#1      CGAAATCATTACCGACGATCGATAAA---AATGCGTTC-ATATATATATATATGATATAT 56
                      *     **  * ** *** *    *   * *  *  * * **   **   * ***  **

consensus_338#0      AAAAATGCGTTCATATATATATATG-ATATATACAGATATATATATATATATATATATAG 479
consensus_338#1      ACAGATATATATATATATATATATATATATATATATATATATATATATATATATATATAN 116
                     * * **   *  ************  ******* * *********************** 

consensus_338#0      TTTAATCTACCTCGATGTAATACACTCGTGTTGACAAGCATCGAAATATCCAGTTCTTTC 539
consensus_338#1      NNTAATCTACCTCGATGTAATACACTCGTGTNNGCAAGCATAGAAATATCCAGTTCTTTC 176
                       *****************************   ******* ******************

consensus_338#0      TTTACGATTTCGCGGATATATATATCTGTTTCGCGCAATATCCCGCCAATCTTCGCGTTA 599
consensus_338#1      TTTACGATTTCGCGGATATATATATCTGTTTCGCGCAATATCCCGCCAATCTTCGCGTTA 236
                     ************************************************************

consensus_338#0      TTGTAAACTTATTGTATATTACTTATACATATATACATACATATATATGTATATATACAT 659
consensus_338#1      TTGTAAACTTATTGTATATTACTTATACATATATACATACATATATATGTATATATACAT 296
                     ************************************************************

consensus_338#0      ATACATAGATGTGTGCATATGTGAAAATGCAAAGGAACACTTGTTTTTCTCAAAGAAAGC 719
consensus_338#1      ATACATAGATGTGTGCATATGTGAAAATGCAAAGGAACACTTGTTTTTCTCAAAGAAAGC 356
                     ************************************************************

consensus_338#0      AGATCGAGTGGAGATTGTACCTTTATACGTATTTCATTGTTCGCGTGCATCGTTCGCGTC 779
consensus_338#1      AGATCGAGTGGAGATTGTACCTTTATACGTATTTCATTNTTCGCGTGCATCGTTCGCGTC 416
                     ************************************** *********************

consensus_338#0      GCGTCGAGAACACGGACGACGATTGGCCAAAAGTATATAAGTATATGAAATCGAACGTTT 839
consensus_338#1      GCGTCGAGAACACGGACGACGATTNNCCAAAAGTATATAAGT----GAAATCGAACGTTT 472
                     ************************  ****************    **************

consensus_338#0      GTCGAATGGGGAACCAGTCCTTCTTTATCGATCGAAACGACATTTTTATCGACGAAAAAA 899
consensus_338#1      GTCGAATGGGGAACCAGTCCTNNTTTATCGATCGAAACGACATTTTTATCGACGAAAAAA 532
                     *********************  *************************************

consensus_338#0      AAAAAAGAAAGAAACATTGGAGGAAACGTATTTCTATAATAAGAAGCGCGTTTACGAACA 959
consensus_338#1      ------------------------------------------------------------
                                                                                 

consensus_338#0      ATAATNNTCATTCATAACCATTCACGACTGACGAACGAATTTCTTCTCGTAGATAAA 1016
consensus_338#1      ---------------------------------------------------------
                                                                              




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)