These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_342#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 587 fasta sequence [TGACATTTAAACAAAGATAAAAAGATTTCGATGTTTTTATATTTTTTTTCTAATTTATCCTTTAAAGAGTAATTTTCATTATTCTGGATTCTTTTACAGGTGACAAATTTCGTCTGGTTCTGGCTACGACTTTGAGAGAGGACGGTTATCCTGATGGAGGGGAGTGGAACGCGACTGAACAGGAAGGCGGTTCCAGAGCAGACAGTTTTGAATATGTGATGTCCGGTATGGTTTATCGAATAGAAGGTGATGAAGCAAGCAATGAACCCAGCAGTAGACTATCTGCCTACGTATCCTTTGGAGGATTGCTGATGAGGTTACAGGGTGATGCAAACAACCTACACGGTTTCGAGATAGATCAACATATGTACTTACTCATGAAAAAGTTAGCGTTCTAACTATGTTATATTTGTTATAACTATGTTACAATTATAACTTAGAAAATATGTATTTTAAATATATTCTTTGTTCATGAGGAATTATTTTAAATATAAGATAAAGATAATTGAACTGAAAAAATATTAATGATTGATGCGTACACAAAAATGTATTGTATGTGTATTTGATCTATAACAGTATATTTATGT] [+] EMBL BI507952 [TGACATTTAAACAAAGATAAAAAGATTTCGATGTTTTTATATTTTTTTTCTAATTTATCCTTTAAAGAGTAATTTTCATTATTCTGGATTCTTTTACAGGTGACAAATTTCGTCTGGTTCTGGCTACGACTTTGAGAGAGGACGGTTATCCTGATGGAGGGGAGTGGAACGCGACTGAACAGGAAGGCGGTTCCAGAGCAGACAGTTTTGAATATGTGATGTCCGGTATGGTTTATCGAATAGAAGGTGATGAAGCAAGCAATGAACCCAGCAGTAGACTATCTGCCTACGTATCCTTTGGAGGATTGCTGATGAGGTTACAGGGTGATGCAAACAACCTACACGGTTTCGAGATAGATCAACATATGTACTTACTCATGAAAAAGTTAGCGTTCTAACTATGTTATATTTGTTATAACTATGTTACAATTATAACTTAGAAAATATGTATTTTAAATATATTCTTTGTTCATGAGGAATTATTTTAAATATAAGATAAAGATAATTGAACTGAAAAAATATTAATGATTGATGCGTACACAAAAATGTATTGTATGTGTATTTGATCTATAACAGTATATTTATGT] consensusID : consensus_342#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 517 fasta sequence [AGAAATGAAATATTGCAAATAAATCGAAGTTAATGTAAAATGTCATATGCAGTTATTCTTCAAGAAATATCTCGATGTTGTGACTGTAACTGTGTTCTGAAATCATTTTGAGACAAATCATAAGTGTAAATGTGCGAATATTGGAATATAGAACAAAAGTAGAATATCCTACGCGACGAAATACGGATGCGCATCGTGTGAAGAATGGATATAAACTATCGTGACAAATTTCGTCTGGTTCTGGCTACGACTTTGAGAGAGGACGGTTATCCTGATGGAGGGGAGTGGAACGCGACTGAACAGGAAGGCGGTTCCAGAGCAGACAGTTTTGAATATGTGATGTCCGGTATGGTTTATCGAATAGAAGGTGATGAAGCAAGCAATGAACCCAGCAGTAGACTATCTGCCTACGTATCCTTTGGAGGATTGCTGATGAGGTTACAGGGTGATGCAAACAACCTACACGGTTTCGAGATAGATCAACATATGTACTTACTCATGAAAAAGTTAGCGTTCT] [+] EMBL BI512650 [AGAAATGAAATATTGCAAATAAATCGAAGTTAATGTAAAATGTCATATGCAGTTATTCTTCAAGAAATATCTCGATGTTGTGACTGTAACTGTGTTCTGAAATCATTTTGAGACAAATCATAAGTGTAAATGTGCGAATATTGGAATATAGAACAAAAGTAGAATATCCTACGCGACGAAATACGGATGCGCATCGTGTGAAGAATGGATATAAACTATCGTGACAAATTTCGTCTGGTTCTGGCTACGACTTTGAGAGAGGACGGTTATCCTGATGGAGGGGAGTGGAACGCGACTGAACAGGAAGGCGGTTCCAGAGCAGACAGTTTTGAATATGTGATGTCCGGTATGGTTTATCGAATAGAAGGTGATGAAGCAAGCAATGAACCCAGCAGTAGACTATCTGCCTACGTATCCTTTGGAGGATTGCTGATGAGGTTACAGGGTGATGCAAACAACCTACACGGTTTCGAGATAGATCAACATATGTACTTACTCATGAAAAAGTTAGCGTTCT] consensusID : consensus_342#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 510 fasta sequence [TGGCTCGAATAATACACGATAGATTATCAATATCGTACATGATTTTCGAAATCGAGTATGTTTCATTTATCTTATTGTTTCTCACTTTGTCATTCGTTTATTTTCCACCGTGTCACGAACGAGTATTTGAAGTTTGTTTCTTCCGAGGAAGAAGGATGAAACGAAAGGAAATATACACGAAGAATAAACTCGCAAGACACCGTTCGAGAAGTTGAGAAAAGGGTGTTACGTGATTAGGATTCGATCGTTCGACGATGAAAGAACGATGCAAAGATTGGTATATAAGGCAAGGGGAGCCGGAAAGAGAAAAAGTATTTAAAGGAAATCAGCTGGCAAAGTGACGGGGGCGGCCATCGTTCACGCGATCATGGAATTACAATCGAGGATCGGCCACGGCGATTACCTGAGCAGGCTCCATTGCGAATCCGAGTCCTTCAAAATGGACTTAATCCTAGACATTAACAGCTGGCTGTATCCCATGGAACTTGGTGACAAATTTCGTCTGGTTCT] [+] EMBL BI511838 [TGGCTCGAATAATACACGATAGATTATCAATATCGTACATGATTTTCGAAATCGAGTATGTTTCATTTATCTTATTGTTTCTCACTTTGTCATTCGTTTATTTTCCACCGTGTCACGAACGAGTATTTGAAGTTTGTTTCTTCCGAGGAAGAAGGATGAAACGAAAGGAAATATACACGAAGAATAAACTCGCAAGACACCGTTCGAGAAGTTGAGAAAAGGGTGTTACGTGATTAGGATTCGATCGTTCGACGATGAAAGAACGATGCAAAGATTGGTATATAAGGCAAGGGGAGCCGGAAAGAGAAAAAGTATTTAAAGGAAATCAGCTGGCAAAGTGACGGGGGCGGCCATCGTTCACGCGATCATGGAATTACAATCGAGGATCGGCCACGGCGATTACCTGAGCAGGCTCCATTGCGAATCCGAGTCCTTCAAAATGGACTTAATCCTAGACATTAACAGCTGGCTGTATCCCATGGAACTTGGTGACAAATTTCGTCTGGTTCT] consensusID : consensus_342#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 478 fasta sequence [TCACATTTACCTTCCTGTCGCGTATCGCGCGCGCTTTTTCTACCGGTTTCTTCGCCGATGCGCGTTACGTGCCATGATTTTGTACATGTACACGCAGTTTCGTTTCGCGTCGCGCGACTAACCTACATTACACGACGTACGGACATGTTGAATTACGCCAAGTTAAAAATGTGTGTTATGATTGTGTCGAATACAAGGCATCGAAAAAGAAATGAAATATTGCAAATAAATCGAAGTTAATGTAAAATGTCATATGCAGTTATTCTTCAAGAAATATCTCGATGTTGTGACTGTAACTGTGTTCTGAAATCATTTCGAGACAAATCATAAGTGTAAATGTGCGAATATTGGAATATAGAACAAAAGTAGAATATCCTACTCGACGAAATACGGATGCGCATCGTGTGAAGAATGGATATAAACTATCGTTAAGTTGTTCTCTCTTTCTCTTGTCTGTGGTTGACGTCGTGAGACAAGA] [+] EMBL BI512134 [TCACATTTACCTTCCTGTCGCGTATCGCGCGCGCTTTTTCTACCGGTTTCTTCGCCGATGCGCGTTACGTGCCATGATTTTGTACATGTACACGCAGTTTCGTTTCGCGTCGCGCGACTAACCTACATTACACGACGTACGGACATGTTGAATTACGCCAAGTTAAAAATGTGTGTTATGATTGTGTCGAATACAAGGCATCGAAAAAGAAATGAAATATTGCAAATAAATCGAAGTTAATGTAAAATGTCATATGCAGTTATTCTTCAAGAAATATCTCGATGTTGTGACTGTAACTGTGTTCTGAAATCATTTCGAGACAAATCATAAGTGTAAATGTGCGAATATTGGAATATAGAACAAAAGTAGAATATCCTACTCGACGAAATACGGATGCGCATCGTGTGAAGAATGGATATAAACTATCGTTAAGTTGTTCTCTCTTTCTCTTGTCTGTGGTTGACGTCGTGAGACAAGA] consensusID : consensus_342#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 359 fasta sequence [GTTACAATTAATTGGATTCCGCGTCTCTTATGTGTAAAAATTTGTTGCTCGATTTGTTCTGTGTATTGATAATATATATTATACGCGCATAATACCTGGCAATGACAATTTCTTTTTCTGTTTCTTTTTTTTTTCGGTTTTTTCCTTGACTGGATGGCGATCGATGATGATGGGTGGTGGTTACAACAGTGAGCAGGCTCCATTGCGAATCCGAGTCCTTCAAAATGGACTTAATCCTNGACATTAACAGCTGGNNNGTATCCTATGGAACTTGGTGACAAATTTCGTCTGGTTCTGGCTACGACTTTGAGNGAGGACGGTTATCCTGATGGAGGGGAGTGGAACGCGACTGAACAGGA] [+] EMBL BI509140 [GTTACAATTAATTGGATTCCGCGTCTCTTATGTGTAAAAATTTGTTGCTCGATTTGTTCTGTGTATTGATAATATATATTATACGCGCATAATACCTGGCAATGACAATTTCTTTTTCTGTTTCTTTTTTTTTTCGGTTTTTTCCTTGACTGGATGGCGATCGATGATGATGGGTGGTGGTTACAACAGTGAGCAGGCTCCATTGCGAATCCGAGTCCTTCAAAATGGACTTAATCCTNGACATTAACAGCTGGNNNGTATCCTATGGAACTTGGTGACAAATTTCGTCTGGTTCTGGCTACGACTTTGAGNGAGGACGGTTATCCTGATGGAGGGGAGTGGAACGCGACTGAACAGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_342#0 ------------------------------------------------------------ consensus_342#1 AGAAATGAAATATTGCAAATAAATCGAAGTTAATGTAAAATGTCATATGCAGTTATTCTT 60 consensus_342#3 ------------------------------------------------------------ consensus_342#4 ------------------------------------------------------------ consensus_342#2 --------------------------TGGCTCGAATAATACACGATAGATTATCAATATC 34 consensus_342#0 ------------------------------------------TGACATTTAAACAAA--- 15 consensus_342#1 CAAGAAATATCTCGATGTTGTGACTGTAACTGTGTTCTGAAATCATTTTGAGACAAATCA 120 consensus_342#3 ------------------------------------------TCACATTTACCTTCCTG- 17 consensus_342#4 -----------------------------------------GTTACAATTAATT------ 13 consensus_342#2 GTACATGATTTTCGAAATCGAGTATGTTTCATTTATCTTATTGTTTCTCACTTTGTCATT 94 consensus_342#0 --GATAAAAAGATTT-CGATGTTTTTATATTTTTTTTC--TAATTTATCCTTT------A 64 consensus_342#1 TAAGTGTAAATGTGC-GAATATTGGAATATAGAACAAAAGTAGAATATCCTACGCGACGA 179 consensus_342#3 -TCGCGTATCGCGCG-CGCTTTTTCTACCGGTTTCTTCGCCGATGCGCGTTACGT---GC 72 consensus_342#4 ---GGATTCCGCGTC-TCTTATGTGTAAAAATTTGTTGCTCGATTTGTTCTGTGT----- 64 consensus_342#2 CGTTTATTTTCCACCGTGTCACGAACGAGTATTTGAAGTTTGTTTCTTCCGAGGAAGAAG 154 consensus_342#0 AAGAGTAATTTTCATTATTCTGGATTCTTTTACAG------GTGACAAA-TTT------- 110 consensus_342#1 AATACGGATGCGCATCGTGTGAAGAATGGATATAAACTATCGTGACAAA-TTT------- 231 consensus_342#3 CATGATTTTGTACATGTACACGCAGTTTCGTTTCGCGTCGCGCGACTAA-CCTACATTAC 131 consensus_342#4 ATTGATAATATATATTATACGCGCATAATACCTGGCA----ATGACAAT-TTCTTTTTCT 119 consensus_342#2 GATGAAACGAAAGGAAATATACACGAAGAA--TAAACTCGCAAGACACCGTTCGAGAAGT 212 *** consensus_342#0 ----CGTCTGGTTCTGGCTA-CGACTTTGAGAGAGGACGGT-TATCCTGA-TGGAGGGGA 163 consensus_342#1 ----CGTCTGGTTCTGGCTA-CGACTTTGAGAGAGGACGGT-TATCCTGA-TGGAGGGGA 284 consensus_342#3 ACGACGTACGGACATGTTGAATTACGCCAAGTTAAAAATGTGTGTTATGA-TTGTGTCGA 190 consensus_342#4 GTTTCTTTT--TTTTTTCGGTTTTTTCCTTGACTGGATGGCGATCGATGA-TGATGGGTG 176 consensus_342#2 TGAGAAAAGGGTGTTACGTGATTAGGATTCGATCGTTCGACGATGAAAGAACGATGCAAA 272 * * ** * consensus_342#0 GTGGAACGCGACTGAACAGGAAGGCGGTTCCA-GAGCAGACAGTTTTGAATATG--TGAT 220 consensus_342#1 GTGGAACGCGACTGAACAGGAAGGCGGTTCCA-GAGCAGACAGTTTTGAATATG--TGAT 341 consensus_342#3 ATACAAGGCATCGAAAAAGAAATGAAATATTGCAAATAAATCGAAGTTAATGTA--AAAT 248 consensus_342#4 GTGGT-TACAACAGTGAGCAGGCTCCATTGCGAATCCGAGTCCTTCAAAATGGACTTAAT 235 consensus_342#2 GATTGGTATATAAGGCAAGGGGAGCCGGAAAGAGAAAAAGTATTT--AAAGGAAATCAGC 330 ** consensus_342#0 GTCCGGTATGG-TTTATCGAATAGAAG-GTGATGAAGCAAGCAATG-AACCCAGCAGT-A 276 consensus_342#1 GTCCGGTATGG-TTTATCGAATAGAAG-GTGATGAAGCAAGCAATG-AACCCAGCAGT-A 397 consensus_342#3 GTCATATGCAG-TTATTCTTCAAGAAATATCTCGATGTTGTGACTGTAACTGTGTTCTGA 307 consensus_342#4 CCTNGACATTA-ACAGCTGGNNNGTATCCTATGGAACTTGGTGACA-AATTTCGTCTG-- 291 consensus_342#2 TGGCAAAGTGACGGGGGCGGCCATCGTTCACGCGATCATGGAATTACAATCGAGGATC-- 388 ** ** * consensus_342#0 GACTATCTGCCTACGTATCCTTTGGAGGATTGCTG----ATGAGGTTACAGGGTGATGCA 332 consensus_342#1 GACTATCTGCCTACGTATCCTTTGGAGGATTGCTG----ATGAGGTTACAGGGTGATGCA 453 consensus_342#3 AATCATTTCGAGACAAATCATAAGTGTAAATG-TG----CGAATATTGGAATATAGAACA 362 consensus_342#4 ---GTTCTGGCTACG-ACTTTGAGNGAGGACGGTT----ATCCTGATGGAGGGGAGTGGA 343 consensus_342#2 --GGCCACGGCGATT--ACCTGAGCAGGCTCCATTGCGAATCCGAGTCCTTCAAAATGGA 444 * * * * * * consensus_342#0 AACAA-CCTACACGGTTTCGAGATAGATCAACATATGTACTTACTCATGAAAAAGTTAGC 391 consensus_342#1 AACAA-CCTACACGGTTTCGAGATAGATCAACATATGTACTTACTCATGAAAAAGTTAGC 512 consensus_342#3 AAAGT-AGAATATCCTACTCGACGAAATACGGATGCGCATCGTGTGAAGAATGGATATAA 421 consensus_342#4 ACGCG-ACTGAACAGGA------------------------------------------- 359 consensus_342#2 CTTAATCCTAGACATTAACAGCTGGCTGTATCCCATGGAACTTGGTGACAAATTTCGTCT 504 * consensus_342#0 GTTCTAACTATGTTATATTTGTTATAACTATGTTACAATTATAACTTAGAAAATATGTAT 451 consensus_342#1 GTTCT------------------------------------------------------- 517 consensus_342#3 ACTATCGTTAAGTTGTTCTCTCTTTCTCTTGTCTGTGGTTGACGTCGTGAGACAAGA--- 478 consensus_342#4 ------------------------------------------------------------ consensus_342#2 GGTTCT------------------------------------------------------ 510 consensus_342#0 TTTAAATATATTCTTTGTTCATGAGGAATTATTTTAAATATAAGATAAAGATAATTGAAC 511 consensus_342#1 ------------------------------------------------------------ consensus_342#3 ------------------------------------------------------------ consensus_342#4 ------------------------------------------------------------ consensus_342#2 ------------------------------------------------------------ consensus_342#0 TGAAAAAATATTAATGATTGATGCGTACACAAAAATGTATTGTATGTGTATTTGATCTAT 571 consensus_342#1 ------------------------------------------------------------ consensus_342#3 ------------------------------------------------------------ consensus_342#4 ------------------------------------------------------------ consensus_342#2 ------------------------------------------------------------ consensus_342#0 AACAGTATATTTATGT 587 consensus_342#1 ---------------- consensus_342#3 ---------------- consensus_342#4 ---------------- consensus_342#2 ---------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |