These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_348#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 759 fasta sequence [TCAGACGTACGTTGGTGTGAACACACATTGTATAATAATAGAGTGATGTCGACTCGGGTTCGACGGTTAAACGAAAAAGGAAAAGACACTTCTCGGCTCGTTCGTAGAAAGTACGTAATGATTAAAAATAAATAATTAAGTAAGGAAGAAGAAGAAGGGGAAAAAAAACAGAAACTACAGTGTAATAATACGAACTCGTTACCGGATTATATGAATTTCCATCGGTTCTAGGCAGCAGAGACTTCGAAGAATCATTTGGTCGATCGTCAAGCATTAATAATCCATGAACGATTTCATTAATTGCATTTATTTATAATAATAACGCTAAGCGAAACATATACATATATATATATGCATATACATATATATATATTAATTGACAATGATTTGAATGATTTCAAATGAGAATAACACGTAAAAAACATTAACGATTAAGAGTTTTTCTACTTAAACATACATGTATATGTATATATATATATATATATATGTATATGTATATATGTGTATGTATGTGTATATGTGTGTATTTGAATGTGTGTTATATGTACGTGCGTATATATGTGTATGCATACACATGTATATGCGTATACATATAAATAATACGCATATATAGGTATGTATACACGTATAAAAATATATTATATGTATATGTATATATATATATAATAATAATACATGTATATGCATATATATATATATACATATAGGTGGGTACGAACGAATAATGAAAGCGTATATTGACGTTAAATGCCCTTATCG] [+] EMBL BI514007 [TCAGACGTACGTTGGTGTGAACACACATTGTATAATAATAGAGTGATGTCGACTCGGGTTCGACGGTTAAACGAAAAAGGAAAAGACACTTCTCGGCTCGTTCGTAGAAAGTACGTAATGATTAAAAATAAATAATTAAGTAAGGAAGAAGAAGAAGGGGAAAAAAAACAGAAACTACAGTGTAATAATACGAACTCGTTACCGGATTATATGAATTTCCATCGGTTCTAGGCAGCAGAGACTTCGAAGAATCATTTGGTCGATCGTCAAGCATTAATAATCCATGAACGATTTCATTAATTGCATTTATTTATAATAATAACGCTAAGCGAAACATATACATATATATATATGCATATACATATATATATATTAATTGACAATGATTTGAATGATTTCAAATGAGAATAACACGTAAAAAACATTAACGATTAAGAGTTTTTCTACTTAAACATACATGTATATGTATATATATATATATAT ] [+] EMBL BI514094 [TCAGACGTACGTTGGTGTGAACACACATTGTATAATAATAGAGTGATGTCGACTCGGGTTCGACGGTTAAACGAAAAAGGAAAAGACACTTCTCGGCTCGTTCGTAGAAAGTACGTAATGATTAAAAATAAATAATTAAGTAAGGAAGAAGAAGAAGGGGAAAAAAAACAGAAACTACAGTGTAATAATACGAACTCGTTACCGGATTATATGAATTTCCATCGGTTCTAGGCAGCAGAGACTTCGAAGAATCATTTGGTCGATCGTCAAGCATTAATAATCCATGAACGATTTCATTAATTGCATTTATTTATAATAATAACGCTAAGCGAAACATATACATATATATATATGCATATACATATATATATATTAATTGACAATGATTTGAATGATTTCAAATGAGAATAACACGTAAAAAACATTAACGATTAAGAGTTTTTCTACTTAAACATACATGTATATGTATATATATATATA ] [+] EMBL BI503225 [ AATAATCCATGAACGATTTCATTAATTGCATTTATTTATAATAATAACGCTAAGCGAAACATATACATATATATATATGCATGTACATATATATATATTAATTGACAATGATTTGAATGATTTCAAATGAGAATAACACGTAAAAAACATTAACGATTAAGAGTTTTTCTACTTAAACATACATATATATGTATATATATATATATATATATGTATATGTATATATGTGTATGTATGTGTATATGTGTGTATTTGAATGTGTGTTATATGTACGTGCGTATATATGTGTATGCATACACATGTATATGCGTATACATATAAATAATACGCATATATAGGTATGTATACACGTATAAAAATATATTATATGTATATGTATATATATATATAATAATAATACATGTATATGCATATATATATATATACATATAGGTGGGTACGAACGAATAATGAAAGCGTATATTGACGTTAAATGCCCTTATCG] consensusID : consensus_348#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 554 fasta sequence [GAAGGATCTGGAAAAACTTTGATACGATATTTTAACGTTTCACGGAAGAATCATCGTGTGAATCACGAGGATACGTCTAGATAGAATCAGTAACCCTCCACCACCAACGTAACCAGTCCAAGTAGACGTTAAAAAGCCAGAATTATCGATTTTTCCGATTTATCCTTCTATTTTGCATTCAGCAAAATTCATCTAATCGTAGTAGTTTCAGGAAGGGGGAGTAATAAGTTTTCAAAAGGTTTACATTTAGAAGTTTGGAATTTAATCATATATTTATTATAATAGGTATCAGCCAGTAGTAACCAGAATTTAAGAATCGTGAATCCTTGTCTTCGAATTTGAATTTGGCGCGAAACTCTTCCGTGAATCGTTAAGATTCTCGAGAAAATCGGATCATGGAACAACGAGACGTGAAATATAAAATGATTAATGATGATAAGAAGAGGAAAGAGAAAATGAGACGAAGCATGCGATGAAAAGACAGAGAAATAGGGAAAGAAGAAAGNNCAGACGTACGTTGGTGTGAACACACATTGTATAATAATAGAGTGATG] [+] EMBL BI504545 [GAAGGATCTGGAAAAACTTTGATACGATATTTTAACGTTTCACGGAAGAATCATCGTGTGAATCACGAGGATACGTCTAGATAGAATCAGTAACCCTCCACCACCAACGTAACCAGTCCAAGTAGACGTTAAAAAGCCAGAATTATCGATTTTTCCGATTTATCCTTCTATTTTGCATTCAGCAAAATTCATCTAATCGTAGTAGTTTCAGGAAGGGGGAGTAATAAGTTTTCAAAAGGTTTACATTTAGAAGTTTGGAATTTAATCATATATTTATTATAATAGGTATCAGCCAGTAGTAACCAGAATTTAAGAATCGTGAATCCTTGTCTTCGAATTTGAATTTGGCGCGAAACTCTTCCGTGAATCGTTAAGATTCTCGAGAAAATCGGATCATGGAACAACGAGACGTGAAATATAAAATGATTAATGATGATAAGAAGAGGAAAGAGAAAATGAGACGAAGCATGCGATGAAAAGACAGAGAAATAGGGAAAGAAGAAAGNNCAGACGTACGTTGGTGTGAACACACATTGTATAATAATAGAGTGATG] consensusID : consensus_348#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 543 fasta sequence [CTTCCTTGCAAACGTGGATCGCGATCGGTTATCACGTATTTTAACGTTTCACGGAAGAATCATCGTGTGAATCACGAGGATACGTCTAGATAGAATCAGTAACCCTCCACCACCAACGTAACCAGTCCAAGTAGACGTTAAAAAGCCAGAATTATCGATTTTTCCGATTTATCCTTCTATTTTGCATTCAGCAAAATTCATCTAATCGTAGTAGTTTCAGGAAGGGGGAGTAATAAGTTTTCAAAAGGTTTACATTTAGAAGTTTGGAATTTAATCGCATATATTTACTATAATAGGTATCAGCCAGTAGTAGCCAGAATTTAAGAATCGTGAATCCTTGTCTTCGAATTTGAATTTGGTGCGAAACTCTTCCGTGAATCGTTAAGATCCTGAAATATAAAATGATTAATGATGATAAGAAGAGGAAAGAGAAAATGAGACGAAGCATGCGATGAAAAGACAGAGAAACAGGGAAAGAAGAAAGATTAGACGTACGTTGGTGTGAACACACGTTGTATAATAATAGAGTGATCTCGACTCGAG] [+] EMBL BI515609 [CTTCCTTGCAAACGTGGATCGCGATCGGTTATCACGTATTTTAACGTTTCACGGAAGAATCATCGTGTGAATCACGAGGATACGTCTAGATAGAATCAGTAACCCTCCACCACCAACGTAACCAGTCCAAGTAGACGTTAAAAAGCCAGAATTATCGATTTTTCCGATTTATCCTTCTATTTTGCATTCAGCAAAATTCATCTAATCGTAGTAGTTTCAGGAAGGGGGAGTAATAAGTTTTCAAAAGGTTTACATTTAGAAGTTTGGAATTTAATCGCATATATTTACTATAATAGGTATCAGCCAGTAGTAGCCAGAATTTAAGAATCGTGAATCCTTGTCTTCGAATTTGAATTTGGTGCGAAACTCTTCCGTGAATCGTTAAGATCCTGAAATATAAAATGATTAATGATGATAAGAAGAGGAAAGAGAAAATGAGACGAAGCATGCGATGAAAAGACAGAGAAACAGGGAAAGAAGAAAGATTAGACGTACGTTGGTGTGAACACACGTTGTATAATAATAGAGTGATCTCGACTCGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_348#1 ------------------------------------------------------------ consensus_348#2 ------------------------------------------------------------ consensus_348#0 TCAGACGTACGTTGGTGTGAACACACATTGTATAATAATAGAGTGATGTCGACTCGGGTT 60 consensus_348#1 ----------------------GAAGGATCTGGAAAAACTTTGATACGATATTT-TAACG 37 consensus_348#2 ------------CTTCCTTGCAAACGTGGATCGCGATCGGTTATCACG-TATTT-TAACG 46 consensus_348#0 CGACGGTTAAACGAAAAAGGAAAAGACACTTCTCGGCTCGTTCGTAGAAAGTACGTAATG 120 * * ** * * *** * consensus_348#1 TTTCACGGAAGAATCATCGTGTGAATCACGAGGATACGTCTAGA-----TAGAATCAGTA 92 consensus_348#2 TTTCACGGAAGAATCATCGTGTGAATCACGAGGATACGTCTAGA-----TAGAATCAGTA 101 consensus_348#0 ATT-AAAAATAAATAATTAAGTAAGGAAGAAGAAGAAGGGGAAAAAAAACAGAAACTACA 179 ** * * *** ** ** * * ** * * * * * **** * * consensus_348#1 ACCCTCCACCACCAAC--GTAACCAGTCCAAGTAGACGTTAAAAAGCCAGAATTATCGAT 150 consensus_348#2 ACCCTCCACCACCAAC--GTAACCAGTCCAAGTAGACGTTAAAAAGCCAGAATTATCGAT 159 consensus_348#0 GTGTAATAATACGAACTCGTTACCGGATTATATGAATTTCCATCGGTTCTAGGCAGCAGA 239 * ** *** ** *** * * * * * * * * * * consensus_348#1 TTTTCCGATTTATCCTTCTATTTTGCATTCAGCAAAATTCATCTA------ATCGTAGTA 204 consensus_348#2 TTTTCCGATTTATCCTTCTATTTTGCATTCAGCAAAATTCATCTA------ATCGTAGTA 213 consensus_348#0 GACTTCGAAGAATCATTTGGTCGATCGTCAAGCATTAATAATCCATGAACGATTTCATTA 299 * *** *** ** * * * **** * * *** * ** * ** consensus_348#1 GTTTCAGGAAGGGGGAGTAATAAGTTTT--CAAAAGGTTTACATTTAGAAGTTTGGA-AT 261 consensus_348#2 GTTTCAGGAAGGGGGAGTAATAAGTTTT--CAAAAGGTTTACATTTAGAAGTTTGGA-AT 270 consensus_348#0 ATTGCATTTATTTATAATAATAACGCTAAGCGAAACATATACATATATATATATGCATAT 359 ** ** * * ****** * * *** * ***** ** * * ** * ** consensus_348#1 TTAAT--CATATATTTATT-ATAATA--------GGTATCAGCCAGTAGTAACC------ 304 consensus_348#2 TTAATCGCATATATTTACT-ATAATA--------GGTATCAGCCAGTAGTAGCC------ 315 consensus_348#0 ACATATATATATATTAATTGACAATGATTTGAATGATTTCAAATGAGAATAACACGTAAA 419 * ******* * * * *** * * *** * ** * consensus_348#1 AGAATTTAAGAATCGTGAATCCTTGTCTTCGAATTTGAATTTGGCGCGAAACTCTTCCGT 364 consensus_348#2 AGAATTTAAGAATCGTGAATCCTTGTCTTCGAATTTGAATTTGGTGCGAAACTCTTCCGT 375 consensus_348#0 AAACATTAACGATTAAGAGTTTTTCTACTTAAACATACATGTATATGTATATATATATAT 479 * * **** ** ** * ** * * ** * ** * * * * * consensus_348#1 GAAT-CGTTAAGATTCTCGAGAAAATCGGATCATGGAACAACGAGACGTGAAATATAAAA 423 consensus_348#2 GAAT-CGTTAAGATCCT--------------------------------GAAATATAAAA 402 consensus_348#0 ATATATATGTATATGTATATATGTGTATGTATGTGTATATGTGTGTATTTGAATGTGTGT 539 ** * * ** *** * consensus_348#1 TG-ATTAATGATGATAAGAAGAGGAAAGAGAAAATGAGACGAAGCATGCG---ATGAA-A 478 consensus_348#2 TG-ATTAATGATGATAAGAAGAGGAAAGAGAAAATGAGACGAAGCATGCG---ATGAA-A 457 consensus_348#0 TATATGTACGTGCGTATATATGTGTATGCATACACATGTATATGCGTATACATATAAATA 599 * ** * * ** * * * * * * * * ** * ** ** * consensus_348#1 AGACAGAGAAATAGGGAAAGAAGAAAGNNCAGACGTACGTTG-GTGTGAACACACAT--- 534 consensus_348#2 AGACAGAGAAACAGGGAAAGAAGAAAGATTAGACGTACGTTG-GTGTGAACACACGT--- 513 consensus_348#0 ATACGCATATATAGGTATGTATACACGTATAAAAATATATTATATGTATATGTATATATA 659 * ** * * * *** * * * * * * ** ** *** * * * consensus_348#1 TGTATAATAATAGAGTGATG---------------------------------------- 554 consensus_348#2 TGTATAATAATAGAGTGATCTCGACTCGAG------------------------------ 543 consensus_348#0 TATATAATAATAATAC-ATGTATATGCATATATATATATATACATATAGGTGGGTACGAA 718 * ********** ** consensus_348#1 ----------------------------------------- consensus_348#2 ----------------------------------------- consensus_348#0 CGAATAATGAAAGCGTATATTGACGTTAAATGCCCTTATCG 759 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |