These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_354#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 782 fasta sequence [TTCGGTGATTTAGTACCAAAAAAACCGAAGTATACATTATTATGTACTCTCTATATCTTGATTGGTTTGGCATTGACAAGCACTATTATTGAGCTTGTAAGTCGTCAATATGCTCAATCATGGAGAAGATTGCAGAGGCTTAGTGGACCATTGGCAGAAACTATACGTAGGTTAGGTGAACAAGCTGGTGGAGATATGTCAGCGCTTCATTCAGATCTTAGAAAAGTCTTAACAGTAATATCAATGCCACGTCTAAAATGGTCAACTTCTCTCAATCGTGGAGATACGAAAGAACAAGATTGGGAAGAAGCAGTAGAAGCTGTGCTTCGAGACATTGCTGTAAATGCTAATAATATTCAACCAAAGAAGAAACAAATAATGCAAATAGTTATTTACGAGTCGAATGTTTGATTAAAATTAAGATCTATTAAGATGTGTTATTTTCAAGATAATTTTGTTTAATTTTTATATTGAAATATCGTTAAAAGAATAAGTTATATTTTTGTAATATTTAATGCAAACATTACTTTATTTAAATTTAAAAATTTTACCCGCGTTTACTGCGCGCGTCGATAAATAAACTTGCGAACGCGCAGAAACCATTATCCCCGACTTCGATCAGTAGTCCTAATGTTGGACTGGCGAAATCGACGAAAACAATAATTTTTAGACGAGTAATTACTAAATTTAGAAATCAGTACCGCACGAAGCAGGACAAAAAGCGTTGTTCTGCGTTCGTTGTCGGATTTTATAGTGATATCTACGTCTCTTGAATCAGTAAT] [+] EMBL BI503090 [TTCGGTGATTTAGTACCAAAAAAACCGAAGTATACATTATTATGTACTCTCTATATCTTGATTGGTTTGGCATTGACAAGCACTATTATTGAGCTTGTAAGTCGTCAATATGCTCAATCATGGAGAAGATTGCAGAGGCTTAGTGGACCATTGGCAGAAACTATACGTAGGTTAGGTGAACAAGCTGGTGGAGATATGTCAGCGCTTCATTCAGATCTTAGAAAAGTCTTAACAGTAATATCAATGCCACGTCTAAAATGGTCAACTTCTCTCAATCGTGGAGATACGAAAGAACAAGATTGGGAAGAAGCAGTAGAAGCTGTGCTTCGAGACATTGCTGTAAATGCTAATAATATTCAACCAAAGAAGAAACAAATAATGCAAATAGTTATTTACGAGTCGAATGTTTGATTAAAATTAAGATCTATTAAGATGTGTTATTTTCAAGATAATTTTATTTAATTTTTATATTGAAATATCGTTAAAAGAATAAGTTATATTTTTGTAATATTTAATGCAAACATTACTTTATTTAAATTTAAAAATTTTACCCGCGTTTACTGCGCGCGTCG ] [+] EMBL BI508332 [TTCGGTGATTTAGTACCAAAAAAACCGAAGTATACATTATTATGTACTCTCTATATCTTGATTGGTTTGGCATTGACAAGCACTATTATTGAGCTTGTAAGTCGTCAATATGCTCAATCATGGAGAAGATTGCAGAGGCTTAGTGGACCATTGGCAGAAACTATACGTAGGTTAGGTGAACAAGCTGGTGGAGATATGTCAGCGCTTCATTCAGATCTTAGAAAAGTCTTAACAGTAATATCAATGCCACGTCTAAAATGGTCAACTTCTCTCAATCGTGGAGATACGAAAGAACAAGATTGGGAAGAAGCAGTAGAAGCTGTGCTTCGAGACATTGCTGTAAATGCTAATAATATTCAACCAAAGAAGAAACAAATAATGCAAATAGTTATTTACGAGTCGAATGTTTGATTAAAATTAAGATCTATTAAGATGTGTTATTTTCAAGATAATTTTATTTAATTTTTATATTGAAATATCGTTAAAAGAATAAGTTATATTTTTGTAATATTTAATGCAAACATTACTTTATTTAAATTTAAAAATTTTACCCGCGTTTACTGCGCGC ] [+] EMBL BI510548 [ CAGTAATATCAATGCCGCGTCTAAAATGGTCAACTTCTCTCAATCGTGGAGATACGAAAGAACAAGATTGGGAAGAAGCAGTAGAAGCTGTGCTTCGAGACATTGCTGTAAATGCTAATAATATTCAACCAAAGAAGAAACAAATAATGCAAATAGTTATTTACGAGTCGAATGTTTGATTAAAATTAAGATCTATTAAGATGTGTTATTTTCAAGATAATTTTGTTTAATTTTTATATTGAAATATCGTTAAAAGAATAAGTTATATTTTTGTAATATTTAATGCAAACATTACTTTATTTAAATTTAAAAATTTTACCCGCGTTTACTGCGCGCGTCGATAAATAAACTTGCGAACGCGCAGAAACCATTATCCCCGACTTCGATCAGTAGTCCTAATGTTGGACTGGCGAAATCGACGAAAACAATAATTTTTAGACGAGTAATTACTAAATTTAGAAATCAGTACCGCACGAAGCAGGACAAAAAGCGTTGTTCTGCGTTCGTTGTCGGATTTTATAGTGATATCTACGTCTCTTGAA ] [+] EMBL BI513077 [ GAACAAGATTGGGAAGAAGCAGTAGAAGCTGTGCTTCGAGACATTGCTGTAAATGCTAATAATATTCAACCAAAGAAGAAACAAATAATGCAAATAGTTATTTACGAGTCGAATGTTTGATTAAAATTAAGATCTATTAAGATGTGTTATTTTCAAGATAATTTTGTTTAATTTTTATATTGAAATATCGTTAAAAGAATAAGTTATATTTTTGTAATATTTAATGCAAACATTACTTTATTTAAATTTAAAAATTTTACCCGCGTTTACTGCGCGCGTCGATAAATAAACTTGCGAACGCGCAGAAACCATTATCCCCGACTTCGATCAGTAGTCCTAATGTTGGACTGGCGAAATCGACGAAAACAATAATTTTTAGACGAGTAATTACTAAATTTAGAAATCAGTACCGCACGAAGCAGGACAAAAAGCGTTGTTCTGCGTTCGTTGTCGGATTTTATAGTGATATCTACGTCTCTTGAATCAGTAAT] consensusID : consensus_354#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 556 fasta sequence [CGGATTTTATAGTGATATCTACGTCTCTTGAATCAGTAATAATTCAAGCTTTATGGTCCAGATCATGCAAAATAGAAACGAGCGCCCATCGCCAATTGTGTGCATTGCGTATCATCAATTAAGTATAATGACTGGTATTAAAGATCCAACTAAACAACCTGATTTAGAGAAAATAAAACAAGAGAATGAACAAATGAATGTTATTGTTAAAAGAAGTTTTATGGATATAAAAAATATGTATATGCAACATTTTTTTAAATTTTCTAAAGATATGGCAGAATCTTTCAGGTCAATATTAGATGACATAAAAGTTCGTATTGAAGAATTTCATGAACAGAATCAATCTATATTTGATCTATTTTCACTTTCACAACTACAAAAGTGGTCTCAATCCCAACGTGAACAATAATTTGAAGTATGAAAATATTGATGTTTTTTGATAGATATGTTTTTAAAATTTATAATATAAAATAAATAACTTGACCAAAATATATATTTACGTTCGCACATTCTTGATGAAATAAAATCATTATGTATATTTAAAATCGTAAAATTA] [+] EMBL BI513772 [CGGATTTTATAGTGATATCTACGTCTCTTGAATCAGTAATAATTCAAGCTTTATGGTCCAGATCATGCAAAATAGAAACGAGCGCCCATCGCCAATTGTGTGCATTGCGTATCATCAATTAAGTATAATGACTGGTATTAAAGATCCAACTAAACAACCTGATTTAGAGAAAATAAAACAAGAGAATGAACAAATGAATGTTATTGTTAAAAGAAGTTTTATGGATATAAAAAATATGTATATGCAACATTTTTTTAAATTTTCTAAAGATATGGCAGAATCTTTCAGGTCAATATTAGATGACATAAAAGTTCGTATTGAAGAATTTCATGAACAGAATCAATCTATATTTGATCTATTTTCACTTTCACAACTACAAAAGTGGTCTCAATCCCAACGTGAACAATAATTTGAAGTATGAAAATATTGATGTTTTTTGATAGATATGTTTTTAAAATTTATAATATAAAATAAATAACTTGACCAAAATATATATTTACGTTCGCACATTCTTGATGAAATAAAATCATTATGTATATTTAAAATCGTAAAATTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_354#0 TTCGGTGATTTAGTACCAAAAAAACCGAAGTATACATTATTATGTACTCTCTATATCTTG 60 consensus_354#1 ------------------------------------------------------------ consensus_354#0 ATTGGTTTGGCATTGACAAGCACTATTATTGAGCTTGTAAGTCGTCAATATGCTCAATCA 120 consensus_354#1 ------------------------------------------------------------ consensus_354#0 TGGAGAAGATTGCAGAGGCTTAGTGGACCATTGGCAGAAACTATACGTAGGTTAGGTGAA 180 consensus_354#1 -----------------------------------------------------------C 1 consensus_354#0 CAAGCTGGTGGAGATATGT-CAGCGCTTCATTCAGATCTTAGAAAAGTCTTAACAGTAAT 239 consensus_354#1 GGATTTTATAGTGATATCTACGTCTCTTGAATCAGTAATAATTCAAGCTTTATGGTCCAG 61 * * * * ***** * * * *** * **** * * *** *** * consensus_354#0 ATCAATGCCACGTCTAAAATGGTCAACTTCTCTCAATCGTGGAGAT-ACGAAAGAACAAG 298 consensus_354#1 ATCA-TGCAAAATA-GAAACGAGCGCCCATCGCCAATTGTGTGCATTGCGTATCATCAA- 118 **** *** * * *** * * * **** *** ** ** * * *** consensus_354#0 ATTGGGAAGAAGCAGTAGAAGCTGTGCTTCGAGACATTGCTGTAAATGCTAATAATATTC 358 consensus_354#1 -TTAAGTATAATGACTGGTATTAAAGATCCAACTAAACAACCTGATT-TAGAGAAAATAA 176 ** * * ** * * * * * * * * * * * * * ** ** consensus_354#0 AACCAAAGAAGAAACAAATAATGCAAATAGTTATTTACGAGTCGAATGTTTGATTAAAAT 418 consensus_354#1 AACAAGAGAATGAACAAATGAATGTTATTGTTAAA-AGAAGTTTTATGGATATAAAAAAT 235 *** * **** ******* * ** **** * *** *** * ***** consensus_354#0 TAAGATCTATTAAGATGTGTTA--TTTTCAAGATAATTTTGTTTAATTTTTATATTGAAA 476 consensus_354#1 ATGTATATGCAACATTTTTTTAAATTTTCTAAA-GATATGGCAGAATCTTTCAGGTCAAT 294 ** * * * * *** ***** * * ** * * *** *** * ** consensus_354#0 TATCGTTAAAAGAATAAGTTATATTTTTGTAATATTTAATGCAAACATTACTTTATTTAA 536 consensus_354#1 ATTAGATGACATAAAAGTTCGTAT---TGAAGAATTTCATG--AACAGAATC-------A 342 * * * * * ** * * *** ** * **** *** **** * * consensus_354#0 ATTTAAAAATTTTACCCGCGTTTACTGCGCGCGTCGATAAATAAACTTGCGAACGCGCAG 596 consensus_354#1 ATCTATA--TTTGATCTATTTTCACTTT-CACAACTACAAAAGTGGTCTCAATCCCAACG 399 ** ** * *** * * ** *** * * * * *** * * * * * * consensus_354#0 AAACCATTATCCCCGACTTCGATCAGTAGTCCTAATGTTGGACTGGCGAAATCGACGAAA 656 consensus_354#1 TGAACAATAATTTGAAGTATGAA-AATATTGATGTTTTTTGA-TAGATATGTTTTTAAAA 457 * ** ** * * ** * ** * * * ** ** * * * * *** consensus_354#0 ACAATAATTTTTAGACGAGTAATT--ACTAAATTTAGAAATCAGTACCGCACGAAGCAGG 714 consensus_354#1 TTTATAATATA-AAATAAATAACTTGACCAAAATATATATTTACGTTCGCACATTCTTGA 516 ***** * * * * *** * ** *** * * * * ***** * consensus_354#0 ACAAAAAGCGTTGTTCTGCGTTCGTTGTCGGATTTTATAGTGATATCTACGTCTCTTGAA 774 consensus_354#1 TGAAATAAAATCATTATGTATA---TTTAAAATCGTAAAATTA----------------- 556 *** * * ** ** * * * ** ** * * * consensus_354#0 TCAGTAAT 782 consensus_354#1 -------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |