These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_379#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 567 fasta sequence [CCGATTGCTTGGAATCTTGGCCTCACCACCAAAGAGCCAAGGATTATCAAAGTGATTCTGCTGGGTCATCAGGGTGTTGGAAAAACTGCTTTAGCGGTGCGATTCGCTACGAAACGTTACATAGGGGAGTACGACTGCACCATCGAAAGGGTTTACAAGGTGGACAGTTTCCTGGATGCGTCATGGGAGATAACAGATCCCCCAGGATATCTACCACCTCCGTCCGAGTTGAAATTGCGGTTTGCAGATGCTATCGTTCTCGTTTATTCTGTATCGGATCGTGTCAGCTTCGATGAAACATCTCGCCTTCGATTTCTAGTATCACACGCAAGGAAAACTAGAAAAGTACCACCGGTAGTGATCCTCATAGCGAACAAAGCGGATCTAACATATACGCCTGGCGAAAGGGTGGTTTCCACCGCAGAAGGTCGTCAAAGAGCGGAAGAAATCGAGGCTCAAGCGTTTTATGAAATTTCTGTCAGAGAATCAGTCGAACAGGTAACATTAAACGAACATTAATCGAATTCATTATTCGATACTATACCCTTATTATACCATACCCTTTGT] [+] EMBL BI510233 [CCGATTGCTTGGAATCTTGGCCTCACCACCAAAGAGCCAAGGATTATCAAAGTGATTCTGCTGGGTCATCAGGGTGTTGGAAAAACTGCTTTAGCGGTGCGATTCGCTACGAAACGTTACATAGGGGAGTACGACTGCACCATCGAAAGGGTTTACAAGGTGGACAGTTTCCTGGATGCGTCATGGGAGATAACAGATCCCCCAGGATATCTACCACCTCCGTCCGAGTTGAAATTGCGGTTTGCAGATGCTATCGTTCTCGTTTATTCTGTATCGGATCGTGTCAGCTTCGATGAAACATCTCGCCTTCGATTTCTAGTATCACACGCAAGGAAAACTAGAAAAGTACCACCGGTAGTGATCCTCATAGCGAACAAAGCGGATCTAACATATACGCCTGGCGAAAGGGTGGTTTCCACCGCAGAAGGTCGTCAAAGAGCGGAAGAAATCGAGGCTCAAGCGTTTTATGAAATTTCTGTCAGAGAATCAGTCGAACAGGTAACATTAAACGAACATTAATCGAATTCATTATTCGATACTATACCCTTATTATACCATACCCTTTGT] [+] EMBL BI514749 [ AGAGCCAAGGATTATCAAAGTGATTCTGCTGGGTCATCAGGGTGTTGGAAAAACTGCTTTAGCGGTGCGATTCGCTACGAAACGTTACATAGGGGAGTACGACTGCACCATCGAAAGGGTTTACAAGGTGGACAGTTTCCTGGATGCGTCATGGGAGATAACAGATCCCCCAGGATATCTACCACCTCCGTCCGAGTTGAAATTGCGGTTTGCAGATGCTATCGTTCTCGTTTATTCTGTGTCGGATCGTGTCAGCTTCGATGAAACATCTCGCCTTCGATTTCTAGTATCACACGCAAGAAAAACTAGAAAAGTACCACCGGTAGTGATCCTCATAGCGAACAAAGCGGATCTAACATATACGCCTGGCGAAAGGGTAGTTTCCACCGCAGAAGGTCGTCAAAGAGCGGAAGAAATCGAGGCTCAAGCGT ] [+] EMBL BI507324 [ CCAAGGATTATCAAANNNATTCTGCTGGGTCATCAGGGTGTTGGAAAAACTGCTTTAACGGTGCGATTCGCTACGAAACGTTACATAGGGGAGTACGACTGCACCATCGAAAGGGTTTACAAGGTGGACAGTTTCCTGGATGCGTCATGGGAGATAACAGATCCCCCAGGATATCTACCACCTCCGTCCGAGTTGAAATTGCGGTTTGCAGATGCTATCGTTCTCGTTTATTCTGTATCGGATCGTGTCAGCTTCGATGAAACATCTCGCCTTCGATTTCTAGTATCACACGCAAGGAAAACTNGAAAAGTACCACCGGTAGTGATCCTCATAGCGAACAAAGCGGATCTAACATATACGCCTGGCGAAAGGGTGGTTTCCACCGCAAAAGGTCGTCAAAGAGCGGAAGAAATCGAGGCTCAAGCGTTTT ] consensusID : consensus_379#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 491 fasta sequence [GATTCTGCTGGGTCATCAGGGTGTTGGAAAAACTGCTTTAGCGGTGCGATTCGCTACGAAACGTTACATAGGGGAGTACGACTGCACCATCGAAAGGGTTTACAAGGTGGACAGTTTCCTGGATGCGTCATGGGAGATAACAGATCCCCCAGGATATCTACCACCTCCGTCCGAGTTGAAATTGCGGTTTGCAGATGCTATCGTTCTCGTTTATTCTGTATCGGATCGTGTCAGCTTCGATGAAACATCTCGCCTTCGATTTCTAGTATCACACGCAAGGAAAACTAGAAAAGTACCACCGGTAGTGATCCTCATAGCGAACAAAGCGGATCTAACATATACGCCTGGCGAAAGGGTGGTTTCCACCGCAGAAGGTCGTCAAAGAGCGGAAGAAANNGAGGCTCAAGCGTTTTATGAAATTTCTGTCAGAGAATCAGTCGAACAGGTCATGGCCGTCTTCACAGACATTTTCAAACTGTTGACGGAATTGC] [+] EMBL BI508677 [GATTCTGCTGGGTCATCAGGGTGTTGGAAAAACTGCTTTAGCGGTGCGATTCGCTACGAAACGTTACATAGGGGAGTACGACTGCACCATCGAAAGGGTTTACAAGGTGGACAGTTTCCTGGATGCGTCATGGGAGATAACAGATCCCCCAGGATATCTACCACCTCCGTCCGAGTTGAAATTGCGGTTTGCAGATGCTATCGTTCTCGTTTATTCTGTATCGGATCGTGTCAGCTTCGATGAAACATCTCGCCTTCGATTTCTAGTATCACACGCAAGGAAAACTAGAAAAGTACCACCGGTAGTGATCCTCATAGCGAACAAAGCGGATCTAACATATACGCCTGGCGAAAGGGTGGTTTCCACCGCAGAAGGTCGTCAAAGAGCGGAAGAAANNGAGGCTCAAGCGTTTTATGAAATTTCTGTCAGAGAATCAGTCGAACAGGTCATGGCCGTCTTCACAGACATTTTCAAACTGTTGACGGAATTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_379#0 CCGATTGCTTGGAATCTTGGCCTCACCACCAAAGAGCCAAGGATTATCAAAGTGATTCTG 60 consensus_379#1 -----------------------------------------------------GATTCTG 7 ******* consensus_379#0 CTGGGTCATCAGGGTGTTGGAAAAACTGCTTTAGCGGTGCGATTCGCTACGAAACGTTAC 120 consensus_379#1 CTGGGTCATCAGGGTGTTGGAAAAACTGCTTTAGCGGTGCGATTCGCTACGAAACGTTAC 67 ************************************************************ consensus_379#0 ATAGGGGAGTACGACTGCACCATCGAAAGGGTTTACAAGGTGGACAGTTTCCTGGATGCG 180 consensus_379#1 ATAGGGGAGTACGACTGCACCATCGAAAGGGTTTACAAGGTGGACAGTTTCCTGGATGCG 127 ************************************************************ consensus_379#0 TCATGGGAGATAACAGATCCCCCAGGATATCTACCACCTCCGTCCGAGTTGAAATTGCGG 240 consensus_379#1 TCATGGGAGATAACAGATCCCCCAGGATATCTACCACCTCCGTCCGAGTTGAAATTGCGG 187 ************************************************************ consensus_379#0 TTTGCAGATGCTATCGTTCTCGTTTATTCTGTATCGGATCGTGTCAGCTTCGATGAAACA 300 consensus_379#1 TTTGCAGATGCTATCGTTCTCGTTTATTCTGTATCGGATCGTGTCAGCTTCGATGAAACA 247 ************************************************************ consensus_379#0 TCTCGCCTTCGATTTCTAGTATCACACGCAAGGAAAACTAGAAAAGTACCACCGGTAGTG 360 consensus_379#1 TCTCGCCTTCGATTTCTAGTATCACACGCAAGGAAAACTAGAAAAGTACCACCGGTAGTG 307 ************************************************************ consensus_379#0 ATCCTCATAGCGAACAAAGCGGATCTAACATATACGCCTGGCGAAAGGGTGGTTTCCACC 420 consensus_379#1 ATCCTCATAGCGAACAAAGCGGATCTAACATATACGCCTGGCGAAAGGGTGGTTTCCACC 367 ************************************************************ consensus_379#0 GCAGAAGGTCGTCAAAGAGCGGAAGAAATCGAGGCTCAAGCGTTTTATGAAATTTCTGTC 480 consensus_379#1 GCAGAAGGTCGTCAAAGAGCGGAAGAAANNGAGGCTCAAGCGTTTTATGAAATTTCTGTC 427 **************************** ****************************** consensus_379#0 AGAGAATCAGTCGAACAGGTAACA-----TTAAACGAACATTAATCGAATTCATTATTCG 535 consensus_379#1 AGAGAATCAGTCGAACAGGTCATGGCCGTCTTCACAGACATTT-TCAAACTGTTGA--CG 484 ******************** * * ** ***** ** ** * * * ** consensus_379#0 ATACTATACCCTTATTATACCATACCCTTTGT 567 consensus_379#1 GAATTGC------------------------- 491 * * |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |