These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_396#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 676 fasta sequence [ACATAAATCCCTTCTTTCAAACATCAACATCCAGATAAAACGATAAAGGGAAACGATAAAGAAAAAGTAGGAAAGGGAGGAAAAAAAAACGAAAGATTGCAAACTCTCGTTCATGTAAATCGTACATAATAATCGATGATCGTAAGATCGTCAGAGCCACCAGGATCAAGAGAACCAATCAGTTCTTGATCGTCGAATACCATTTTCGCCGAGGTTCCATCTGATCAAAGTGTTATACCTTTTTGCTTCGAAAACTACTCGATTGAACTATGAATTGCATCTCGTTTAATCTGATCGAGTTGTTGCGTGAAGAATCAAGAGTGAACACAGTGTAGTGCGTACAATATTCTCGATTCTTGATATTCTATTCGAATCCGAATTTCCCGCGCGGCTGTTTCTTCAAAACTTCCGGTTTTTTTTCACGAAGTGTCCGAAATTTAAAAGAAAGAAGTACACAGTGATCACGGAAGCGCAATTTTTAAACGGCTGACACAGTGTCGTGAGATTGATAATATATCACGCTTAGAAACACTGTTATGTCTTCGCGGTAGTTCCGCGAACCAATACAGGAACACGCGAGAGAAATAATCAAAAGCGGAAGAACTTCTTCACGNNGAGCGAATAAAATCATTTAAAATGACGGAAGCATCGAGAGAACCGGAACTCGCAGATCCTG] [+] EMBL BI506330 [ACATAAATCCCTTCTTTCAAACATCAACATCCAGATAAAACGATAAAGGGAAACGATAAAGAAAAAGTAGGAAAAGGAAGAAAAAAAAACGAAAGATTGCAAACTCTCGTTCATGTAAATCGTACATAATAATCGATGATCGTAAGATCGTCAGAGCCACCAGGATCAAGAGAACCCATCAGCTCTTGATCGTCGAATACCATTTTCGCCGAGGTTCCATCTGATCAAAGTGTTATACCTTTTTGCTTCGAAAACTACTCGATTGAACTATGAATTGCATCTCGTTTAATCTGATCGAGTTGTTGCGTGAAGAATCAAGAGTGAACACAGTGTAGTGCGTACAATATTCTCGATTCTTGATATTCTATTCGAATCCGAATTTCCCGCGCGGCTGTTTCTTCAAAACTTCCGG TTTTTTTCACGAAGTGTCCGAAATTTAAAAGAAAGAAGTACACAGTGATCACGGAAGCGCAATTTTTAAACGGCTGACACAGTGTCGTGAGATTGATAATATATCACGCTTAGAAACACTGTTATGTCTTCGCGGTAGTTCCGCGAACCAATACAGGAACACGCGAGAGAAATAATCAAAAGCGGAAGAACTTCTTCACGGTGAGCGAATAAAATCATTTAAAAT ] [+] EMBL BI510434 [ AACGATAAAGAAAAAGT AAGGAAGGAAAAAAAAACGAAAGATTGCAAACTCTCGTTCATGTAAATCGTACATAATAATCGATGATCGTAAGATCGTCAGAGCCACCAGGATCAAGAGAACCAATCAGTTCTTGATCGTCGAATACCATTTTCGCCGAGGTTCCATCTGATCAAAGTGTTATACCTTTTTGCTTCGAAAACTACTCGATTGAACTATGAATTGCATCTCGTTTAATCTGATCGAGTTGTTGCGTGAAGAATCAAGAGTGAACACAGTGTAGTGCGTACAATATTCTCGATTCTTGATATTCTATTCGAATCCGAATTTCCCGCGCGGCTGTTTCTTCAAAACTTCCGGTTTTTTTTCACGAAGTGTCCGAAATTTAAAAGAAAGAAGTACACAGTGATCACGGAAGCGCAATTTTTAAACGGCTGACACAGTGTCGTGAGATTGATAATATATCACGCTTAGAAACACTGTTATGTCTTCGCGGTAGTTCCGCGAACCAATACAGGAACACGCGAGAGAAATAATCAAAAGCGGAAGAACTTCTTCACGNNGAGCGAATAAAATCATTTAAAATGACGGAAGCATCGAGAGAACCGGAACTCGCAGA ] [+] EMBL BI509896 [ CGAAAGATTGCAAACTCTCGTTCATGTAAATCGTACATAATAATCGATGATCGTAAGATCGTCAGAGCCACCAGGATCAAGAGAACCAATCAGTTCTTGATCGTCGAATACCATTTTCGCCGAGGTTCCATCTGATCAAAGTGTTATACCTTTTTGCTTCGAAAACTACTCGATTGAACTATGAATTGCATCTCGTTTAATCTGATCGAGTTGTTGCGTGAAGAATCAAGAGTGAACACAGTGTAGTGCGTACAATATTCTCGATTCTTGATATTCTATTCGAATCCGAATTTCCCGCGCGGCTGTTTCTTCAAAACTTCCGGTTTTTTTTCACGAAGTGTCCGAAATTTAAAAGAAAGAAGTACACAGTGATCACGGAAGCGCAATTTTTAAACGGCTGACACAGTGTCGTGAGATTGATAATATATCACGCTTAGAAACACTGTTATGTCTTCGCGGTAGTTCCGCGAACCAATACAGGAACACGCGAGAGAAATAATCAAAAGCGGAAGAACTTCTTCACGNNNAGCGAATAAAATCATTTAAAATGACGGAAGCATCGAGAGAACCGGAACTCGCAGATCCTG] consensusID : consensus_396#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 578 fasta sequence [GTGTCCGAAATTTAAAAGAAAGAAGTACACAGTGATCACGGAAGCGCAATTTTTAAACGGCTGACACAGTGTCGTGAGATTGATAATATATCACGCTTAGATTTTCCACACGACAAAACGCAAATCGCATCCGGTCTCAGAAAAAGAACTCGGTCAAACTCGTTCTCTGTCTAAACTACATCCTTTTAACCTTGAATAAGAGCTCTAGAAGAGCTTATAAATTCACTCATGTGAATTAAATAAATATTTTGTATATAATATATAATACATTGAGGGACTAGTTAAAGGAAACGAAGAAATATATATAAAAATATGAAATTGTCGACAGAAACACTGTTATGTCTTCGCGGTAGTTCCGCGAACCAATACAGGAACACGCGAGAGAAATAATCAAAAGCGGAAGAACTTCTTCACGGTGAGCGAATAAAATCATTTAAAATGACGGAAGCATCGAGAGAACCGGAACTCGCAGATCCTGAAAATCCTGACAAAACTGCATTGAATCTAACATCTGCTTCTAATAAAATGAAACCATTGCCAGAACGTGGTACATGGAGCACCAAGCTAGATTTCATTTT] [+] EMBL BI509391 [GTGTCCGAAATTTAAAAGAAAGAAGTACACAGTGATCACGGAAGCGCAATTTTTAAACGGCTGACACAGTGTCGTGAGATTGATAATATATCACGCTTAGATTTTCCACACGACAAAACGCAAATCGCATCCGGTCTCAGAAAAAGAACTCGGTCAAACTCGTTCTCTGTCTAAACTACATCCTTTTAACCTTGAATAAGAGCTCTAGAAGAGCTTATAAATTCACTCATGTGAATTAAATAAATATTTTGTATATAATATATAATACATTGAGGGACTAGTTAAAGGAAACGAAGAAATATATATAAAAATATGAAATTGTCGACAGAAACACTGTTATGTCTTCGCGGTAGTTCCGCGAACCAATACAGGAACACGCGAGAGAAATAATCAAAAGCGGAAGAACTTCTTCACGGTGAGCGAATAAAATCATTTAAAATGACGGAAGCATCGAGAGAACCGGAACTCGCAGATCCTGAAAATCCTGACAAAACTGCATTGAATCTAACATCTGCTTCTAATAAAATGAAACCATTGCCAGAACGTGGTACATGGAGCACCAAGCTAGATTTCATTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_396#0 ACATAAATCCCTTCTTTCAAACATCAACATCCAGATAAAACGATAAAGGGAAACGATAAA 60 consensus_396#1 ------------------------------------------------------------ consensus_396#0 GAAAAAGTAGGAAAGGGAGGAAAAAAAAACGAAAGATTGCAAACTCTCGTTCATGTAAAT 120 consensus_396#1 ------------------------------------------------------------ consensus_396#0 CGTACATAATAATCGATGATCGTAAGATCGTCAGAGCCACCAGGATCAAGAGAACCAATC 180 consensus_396#1 --------GTGTCCGAAATTTAAAAGAAAG--AAGTACACAGTGATCACGGAAGCG---C 47 * *** * **** * * *** ***** * * * * consensus_396#0 AGTTCTTGATCGTCGAATACCATTTTCGCCGAGGTTCCATCTGATCAAAGTGTTATACCT 240 consensus_396#1 AATTTTTAAACGGCTGACAC-AGTGTCGT-GAGATT------GAT-AATATATCACGCTT 98 * ** ** * ** * * ** * * *** *** ** *** ** * * * * * consensus_396#0 TTTTGCTTCGAAAACTACTCGATTGAACTATGAATTGCATCTCGTTTAATCTGATCGAGT 300 consensus_396#1 AGATTTTCC-------ACACGACAAAAC-GCAAATCGCATCCGGTCTCA----------- 139 * * * ** *** *** *** ***** ** * * consensus_396#0 TGTTGCGTGAAGAATCAAGAGTGAACACAGTGTAGTGCGTACAATATTCTCGATTCTTGA 360 consensus_396#1 --------GAAAAA--------GAACTCGGTCAAACTCGTTCTCTGTCTAAACTACATCC 183 *** ** **** * ** * *** * * * * * * consensus_396#0 TATTCTATTCGAATCCGAATTTCCCGCGCGGCTGTTTCTTCAAAACTTCCGGTTTTTTTT 420 consensus_396#1 TTTTAACCTTGAATAAGAGCTCTAGAAGAGCTTAT------AAATTCACTCATGTGAATT 237 * ** * **** ** * * * * * *** * * * ** consensus_396#0 CACGAAGTGTCCGAAATTTAAAAGAAAGAAGTACACAGTGATCACGGAAGCGCAATTTTT 480 consensus_396#1 AAATAAATATTTTGTATATAATATATA-ATACATTGAGGGACTAGTTAAAGGAAACGAAG 296 * ** * * ** *** * * * * * ** ** * ** * ** consensus_396#0 AAACGGCTGACACAGTGTCGTGAGATTGATAATATATCACGCTTAGAAACACTGTTATGT 540 consensus_396#1 AAATAT---ATATAAAAATATGAAATTGTCGACA-----------GAAACACTGTTATGT 342 *** * * * *** **** * * *************** consensus_396#0 CTTCGCGGTAGTTCCGCGAACCAATACAGGAACACGCGAGAGAAATAATCAAAAGCGGAA 600 consensus_396#1 CTTCGCGGTAGTTCCGCGAACCAATACAGGAACACGCGAGAGAAATAATCAAAAGCGGAA 402 ************************************************************ consensus_396#0 GAACTTCTTCACGNNGAGCGAATAAAATCATTTAAAATGACGGAAGCATCGAGAGAACCG 660 consensus_396#1 GAACTTCTTCACGGTGAGCGAATAAAATCATTTAAAATGACGGAAGCATCGAGAGAACCG 462 ************* ********************************************* consensus_396#0 GAACTCGCAGATCCTG-------------------------------------------- 676 consensus_396#1 GAACTCGCAGATCCTGAAAATCCTGACAAAACTGCATTGAATCTAACATCTGCTTCTAAT 522 **************** consensus_396#0 -------------------------------------------------------- consensus_396#1 AAAATGAAACCATTGCCAGAACGTGGTACATGGAGCACCAAGCTAGATTTCATTTT 578 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |