These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_416#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 665 fasta sequence [TGGATTTNNNCAACCTCTGAAAAACAAGAAGCACGCGCATTTTTACGCGAACGATTTCTACGTGTAATTACTGGAATTGTTGGCAAACAAGCAGATTTTTATTTGTACGAAAATACGCGGGTTTCCGCCGAGTTTAGAGGTTGTGATGTGGAATGCTTGGAAGTATATACACGGAATTTGGAAACACCATTGGGCAAGATTCCAGAAGCTGTTCTAAGAACAAGTGACATTATTTATATGGATATGAATGATATTAATGTAGCACAATAAATTTCCAAAATACAGATTGCCAAAGTTCAAGTGGCCACGCCGAGTAAAGCTTCGACCAATCACGTCTCGAGATCGAATAATTTTGACGCCGAGCCAAAAGATGTGAAGAATTTGAAAACGGTCGATAAGGAAACGAAATTGCAAAAGGATTTTCGGAATGAAGAGAGATACAGGGAAGATTTGCAGGATTTTTCGAAGGGACGGGGAAAATTATCGATCGTTCGCTGCAGAGCAATCCGAGATGTTTACATACCAGAAGTGAAACGGGACCTGCCAGCTGTAGCGTGTAAATTTGGGAATAACACTTTCGTTTTATCGAGCGAAAGATTTNNNGAGGATCGACGATTGTATCTCGATATAAGAATCGACGAGAATATATTTGAAAATATAAAATA] [+] EMBL BI507083 [TGGATTTNNNCAACCTCTGAAAAACAAGAAGCACGCGCATTTTTACGCGAACGATTTCTACGTGTAATTACTGGAATTGTTGGCAAACAAGCAGATTTTTATTTGTACGAAAATACGCGGGTTTCCGCCGAGTTTAGAGGTTGTGATGTGGAATGTTTGGAAGTATATACACGGAATTTGGAAACACCATTGGGCAAGATTCCAGAAGCTGTTCTAAGAACAAGTGACATTATTTATATGGATATGAATGATATTAATGTAGCACAATAAATTTCCAAAATACAGATTGCCAAAGTTCAAGTGGCCACGCCGAGTAAAGCTTCGACCAATCACGTCTCGAGATCGAATAATTTTGACGCCGAGCCAAAAGATGTGAAGAATTTGAAAACGGTCGATAAGGAAACGAAATTGCAAAAGGATTTTCGGAATGAAGAGAGATACAGGGAAGATTTGCAGGATTTTTCGAAGGGACGGGGAAAATTATCGATCGTTCGCTGCAGAGCAATCCGAGATGTTTACATACCAGAAGTGAAACGGGACCTGCCAGCTGTAGCGTGTAAATTTGGGAATAACACTTTCGTTTTATCGAGCGAAAGATTT ] [+] EMBL BI503978 [ TCTGAAAAACAAGAAGCACGCGCATTTTTACGCGAACGATTTCTACGTGTAATTACTGGAATTGTTGGCAAACAAGCAGATTTTTATTTGTACGAAAATACGCGGGTTTCCGCCGAGTTTAGAGGTTGTGATGTGGAATGCTTGGAA NNNATACACGGAATTTGGAAACACCATTGGGCAAGATTCCAGAAGCTGTTCTAAGAACAAGTGACATTATTTATATGGATATGAATGATATTAATGTAGCACAATAAATTTCCAAAATACAGATTGCCAAAGTTCAAGTGGCCACGCCGAGTAAAGCTTCGACCAATCACGTCTCGAGATCGAATAATTTTGACGCCGAGCCAAAAGATGTGAAGAATTTGAAAACGGTCGATAAGGAAACGAAATTGCAAAAGGATTTTCGGAATGAAGAGAGATACAGGGAAGATTTGCAGGATTTTTCGAAGGGACGGGGAAAATTATCGATCGTTCGCTGCAGAGCAATCCGAGATGTTTACATACCAGAAGTGAAACGGGACCTGCCAGCTGTAGCGTGTAAATTTGGGAATAACACTTTCGTTTTATCGAGCGAAAGATTTCTCGAGGATCGACGATTGTATCTCGATATAAGAATCGACGAGAA ] [+] EMBL BI509933 [ ACGCGCATTTTTACGCGAACGATTTCTACGTGTAATTACTGGAATTGTTGGCAAACAAGCAGATTTTTATTTGTACGAAAATACGCGGGTTTCCGCCGAGTTTAGAGGTTGTGATGTGGAATGCTTGGAAGTATATACACGGAATTTGGAAACACCATTGGGCAAGATTCCAGAAGCTGTTCTAAGAACAAGTGACATTATTTATATGGATATGAATGATATTAATGTAGCACAATAAATTTCCAAAATACAGATTGCCAAAGTTCAAGTGGCCACGCCGAGTAAAGCTTCGACCAATCACGTCTCGAGATCGAATAATTTTGACGCCGAGCCAAAAGATGTGAAGAATTTGAAAACGGTCGATAAGGAAACGAAATTGCAAAAGGATTTTCGGAATGAAGAGAGATACAGGGAAGATTTGCAGGATTTTTCGAAGGGACGGGGAAAATTATCGATCGTTCGCTGCAGAGCAATCCGAGATGTTTACATACCAGAAGTGAAACGGGACCTGCCAGCTGTAGCGTGTAAATTTGGGAATAACACTTTCGTTTTATCGAGCGAAAGATTTNNNGAGGATCGACGATTGTATCTCGATATAAGAATCGACGAGAATATATTTGAAAATATAAAATA] consensusID : consensus_416#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 365 fasta sequence [ACGCGCATTTTTACGCGAACGATTTCTACGTGTAATTACTGGAATTGTTGGCAAACAAGCAGATTTTTATTTGTACGAAAATACGCGGGTTTCCGCCGAGTTTAGAGGTTGTGATGTGGAATGTTTGGAAGTATATACACGGAATTTGGAAACACCATTGGGCAAGATTCCAGAAGCTGTTCTAAGAACAAGTGACATTATTTATATGGATATGAATGATATTAATGTAGCACAATAAATTTCCAAAATACAGTTCAAGATCGACGCATATTTAACATAGTGTTTATTTCTGAAATAATGCGTCTTAAATGATCAATAATTTCTTTAAGGTGCCTATTTTTTAACACCACTTGCTGAAAAATTAA] [+] EMBL BI509682 [ACGCGCATTTTTACGCGAACGATTTCTACGTGTAATTACTGGAATTGTTGGCAAACAAGCAGATTTTTATTTGTACGAAAATACGCGGGTTTCCGCCGAGTTTAGAGGTTGTGATGTGGAATGTTTGGAAGTATATACACGGAATTTGGAAACACCATTGGGCAAGATTCCAGAAGCTGTTCTAAGAACAAGTGACATTATTTATATGGATATGAATGATATTAATGTAGCACAATAAATTTCCAAAATACAGTTCAAGATCGACGCATATTTAACATAGTGTTTATTTCTGAAATAATGCGTCTTAAATGATCAATAATTTCTTTAAGGTGCCTATTTTTTAACACCACTTGCTGAAAAATTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_416#0 TGGATTTNNNCAACCTCTGAAAAACAAGAAGCACGCGCATTTTTACGCGAACGATTTCTA 60 consensus_416#1 --------------------------------ACGCGCATTTTTACGCGAACGATTTCTA 28 **************************** consensus_416#0 CGTGTAATTACTGGAATTGTTGGCAAACAAGCAGATTTTTATTTGTACGAAAATACGCGG 120 consensus_416#1 CGTGTAATTACTGGAATTGTTGGCAAACAAGCAGATTTTTATTTGTACGAAAATACGCGG 88 ************************************************************ consensus_416#0 GTTTCCGCCGAGTTTAGAGGTTGTGATGTGGAATGCTTGGAAGTATATACACGGAATTTG 180 consensus_416#1 GTTTCCGCCGAGTTTAGAGGTTGTGATGTGGAATGTTTGGAAGTATATACACGGAATTTG 148 *********************************** ************************ consensus_416#0 GAAACACCATTGGGCAAGATTCCAGAAGCTGTTCTAAGAACAAGTGACATTATTTATATG 240 consensus_416#1 GAAACACCATTGGGCAAGATTCCAGAAGCTGTTCTAAGAACAAGTGACATTATTTATATG 208 ************************************************************ consensus_416#0 GATATGAATGATATTAATGTAGCACAATAAATTTCCAAAATACAGATTGCCAAAGTTCAA 300 consensus_416#1 GATATGAATGATATTAATGTAGCACAATAAATTTCCAAAATACAGTTCAAGATCGACGCA 268 ********************************************* * * * * consensus_416#0 GTGGCCACGCCGAGTAAAGCTTCGACCAATCACGTCTCGA--GATCGAATAATTTTGACG 358 consensus_416#1 TATTTAACATAGTGTTTATTTCTGAAATAATGCGTCTTAAATGATC-AATAATTT----- 322 ** * ** * * ** * ***** * **** ******** consensus_416#0 CCGAGCCAAAAGATGTGAAGAATTTGAAAACGGTCGATAAGGAAACGAAATTGCAAAAGG 418 consensus_416#1 -----CTTTAAGGTGCCTATTTTTTAACACCACTTGCTGAAAAATTAA------------ 365 * *** ** * *** * * * * * * * ** * consensus_416#0 ATTTTCGGAATGAAGAGAGATACAGGGAAGATTTGCAGGATTTTTCGAAGGGACGGGGAA 478 consensus_416#1 ------------------------------------------------------------ consensus_416#0 AATTATCGATCGTTCGCTGCAGAGCAATCCGAGATGTTTACATACCAGAAGTGAAACGGG 538 consensus_416#1 ------------------------------------------------------------ consensus_416#0 ACCTGCCAGCTGTAGCGTGTAAATTTGGGAATAACACTTTCGTTTTATCGAGCGAAAGAT 598 consensus_416#1 ------------------------------------------------------------ consensus_416#0 TTNNNGAGGATCGACGATTGTATCTCGATATAAGAATCGACGAGAATATATTTGAAAATA 658 consensus_416#1 ------------------------------------------------------------ consensus_416#0 TAAAATA 665 consensus_416#1 ------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |