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Apis mellifera
cluster # 442 cluster # 442       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_442#0 length = 601 sequences # 1  
consensus_442#1 length = 493 sequences # 1  
consensus_442#2 length = 487 sequences # 2  

consensusID : consensus_442#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 601
fasta sequence
                              [GGGAGCGAAGCGCGCGAAGCGTTCCAATGGGACAATCGCGGGCATCCCGCTCCTCGCTCAGCGCCGGCACGCCGGACAGCCTGAGCGACAACGAGAGTTCCTTCAAGATTGCCTCTGCAAGGAAATCGAGCACACCGTACAGAAGCACAATGACACCTGGAGGTAGCCGGCCATCCTCGAGACCGGCTTCGAGACCAGCATCCAGACCGACCAGCAGGCCCGGAAGTAGGCCGGCGTCCCGACAGGGAAGCAAGCCACCGAGTCGATATGGATCCACTCAGTCGTTGGACAGCACTGACGAATCGACGAACGTGAGCCGTATTCCGCGGAGAACGGCGGTGAGCACGACGGGAAACACTCCTACATCGAGCAGGCACAACAGCGTTTCAGGGAAACGGCTTGGAACGCCTGTGAACGGGTCGAGTTCGCGGCCCCGAACACCCACAGGGCTTGTTAGCCCCGCGAGTGGTGTCCCGTCCAGCCGCTCGAGGATCCCCGTGTACGTGGGCACGGATATTAAATCCCCACAATCGACGACCAGCAATATTTCCACTCATTCTACGCAAAGCAACCACTCGACTGTTTCTACCGATTCTACCGG]

[+] EMBL BI504100             [GGGAGCGAAGCGCGCGAAGCGTTCCAATGGGACAATCGCGGGCATCCCGCTCCTCGCTCAGCGCCGGCACGCCGGACAGCCTGAGCGACAACGAGAGTTCCTTCAAGATTGCCTCTGCAAGGAAATCGAGCACACCGTACAGAAGCACAATGACACCTGGAGGTAGCCGGCCATCCTCGAGACCGGCTTCGAGACCAGCATCCAGACCGACCAGCAGGCCCGGAAGTAGGCCGGCGTCCCGACAGGGAAGCAAGCCACCGAGTCGATATGGATCCACTCAGTCGTTGGACAGCACTGACGAATCGACGAACGTGAGCCGTATTCCGCGGAGAACGGCGGTGAGCACGACGGGAAACACTCCTACATCGAGCAGGCACAACAGCGTTTCAGGGAAACGGCTTGGAACGCCTGTGAACGGGTCGAGTTCGCGGCCCCGAACACCCACAGGGCTTGTTAGCCCCGCGAGTGGTGTCCCGTCCAGCCGCTCGAGGATCCCCGTGTACGTGGGCACGGATATTAAATCCCCACAATCGACGACCAGCAATATTTCCACTCATTCTACGCAAAGCAACCACTCGACTGTTTCTACCGATTCTACCGG]


>consensus_442#0 GGGAGCGAAGCGCGCGAAGCGTTCCAATGGGACAATCGCGGGCATCCCGCTCCTCGCTCA GCGCCGGCACGCCGGACAGCCTGAGCGACAACGAGAGTTCCTTCAAGATTGCCTCTGCAA GGAAATCGAGCACACCGTACAGAAGCACAATGACACCTGGAGGTAGCCGGCCATCCTCGA GACCGGCTTCGAGACCAGCATCCAGACCGACCAGCAGGCCCGGAAGTAGGCCGGCGTCCC GACAGGGAAGCAAGCCACCGAGTCGATATGGATCCACTCAGTCGTTGGACAGCACTGACG AATCGACGAACGTGAGCCGTATTCCGCGGAGAACGGCGGTGAGCACGACGGGAAACACTC CTACATCGAGCAGGCACAACAGCGTTTCAGGGAAACGGCTTGGAACGCCTGTGAACGGGT CGAGTTCGCGGCCCCGAACACCCACAGGGCTTGTTAGCCCCGCGAGTGGTGTCCCGTCCA GCCGCTCGAGGATCCCCGTGTACGTGGGCACGGATATTAAATCCCCACAATCGACGACCA GCAATATTTCCACTCATTCTACGCAAAGCAACCACTCGACTGTTTCTACCGATTCTACCG G



consensusID : consensus_442#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 493
fasta sequence
                              [GAGGTTAGAAATGGGAGCAGTCGCGGACCTGTTTGACCAACACGGCGAAGGATTAATAGATTGGAAGGAGTTCATCGCAGCTTTGAGACCAGATTGGGAAGAACGTAGGACGTACAATGATACGGACAAGATCCACGATGAAGTGAAACGATTGGTGATGCTCTGTACTTGCCGACAGAAATTCCGCGTGTTCCAAGTTGGCGAAGGAAAATATAGGTTTGGAGACAGTCAAAAGTTGCGATTGGTACGAATTCTACGATCGACCGTAATGGTACGAGTCGGTGGTGGTTGGGTAGCTTTGGACGAATTTTTATTAAAAAATGATCCTTGCCGCGCGGAGGAGTTTATGAGCCAGCTGACGCCGATTTTTGAGAGTTTGAGGCAAAAGGAGGACCTCCCGTGCTCGTATCCCCTCCACATGCACGCCCCCTCTTATCATTGGGTAAGGGAGCGAAGCGCGCGAAGCGTTCCAATGGGACAATCGCGGGCATCC]

[+] EMBL BI509084             [GAGGTTAGAAATGGGAGCAGTCGCGGACCTGTTTGACCAACACGGCGAAGGATTAATAGATTGGAAGGAGTTCATCGCAGCTTTGAGACCAGATTGGGAAGAACGTAGGACGTACAATGATACGGACAAGATCCACGATGAAGTGAAACGATTGGTGATGCTCTGTACTTGCCGACAGAAATTCCGCGTGTTCCAAGTTGGCGAAGGAAAATATAGGTTTGGAGACAGTCAAAAGTTGCGATTGGTACGAATTCTACGATCGACCGTAATGGTACGAGTCGGTGGTGGTTGGGTAGCTTTGGACGAATTTTTATTAAAAAATGATCCTTGCCGCGCGGAGGAGTTTATGAGCCAGCTGACGCCGATTTTTGAGAGTTTGAGGCAAAAGGAGGACCTCCCGTGCTCGTATCCCCTCCACATGCACGCCCCCTCTTATCATTGGGTAAGGGAGCGAAGCGCGCGAAGCGTTCCAATGGGACAATCGCGGGCATCC]


>consensus_442#1 GAGGTTAGAAATGGGAGCAGTCGCGGACCTGTTTGACCAACACGGCGAAGGATTAATAGA TTGGAAGGAGTTCATCGCAGCTTTGAGACCAGATTGGGAAGAACGTAGGACGTACAATGA TACGGACAAGATCCACGATGAAGTGAAACGATTGGTGATGCTCTGTACTTGCCGACAGAA ATTCCGCGTGTTCCAAGTTGGCGAAGGAAAATATAGGTTTGGAGACAGTCAAAAGTTGCG ATTGGTACGAATTCTACGATCGACCGTAATGGTACGAGTCGGTGGTGGTTGGGTAGCTTT GGACGAATTTTTATTAAAAAATGATCCTTGCCGCGCGGAGGAGTTTATGAGCCAGCTGAC GCCGATTTTTGAGAGTTTGAGGCAAAAGGAGGACCTCCCGTGCTCGTATCCCCTCCACAT GCACGCCCCCTCTTATCATTGGGTAAGGGAGCGAAGCGCGCGAAGCGTTCCAATGGGACA ATCGCGGGCATCC



consensusID : consensus_442#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 487
fasta sequence
                              [GTAGGCCGGCGTCCCGACAGGGAAGCAAGCCACCGAGTCGATATGGATCCACTCAGTCGTTGGACAGCACCGACGAATCGACGAACGTGAGCCGTATTCCGCGGAGAACGGCGGTGAGCACGACGGGAAACACTCCTACATCGAGCAGGCACAACAGCGTTTCAGGGAAACGGCTTGGAACGCCTGTGAACGGGTCGAGTTCGCGGCCCCGAACACCCACAGGGCTTGTTAGCCCCGCGAGTGGTGTCCCGTCCAGAACGAGGACACCGTCCAGTGGATCGAGCACGCCACTGCCTCCATCGTTGAAGCTGTCCAGGAAGCCATCCGGTGCATCGGACACGTCCGTTTCGACGACGACAACGACACCCGCCTCCCATCGAAAAGGAAAACCGACCCCGGTCGATCAACGCGCGCCTTTCCGTTTATAGTAGTCGTCGCACGCCAATTCGAGATCAAAAAGAGAAAAAAAATAGGCAATAAACGGAGG]

[+] EMBL BI516348             [GTAGGCCGGCGTCCCGACAGGGAAGCAAGCCACCGAGTCGATATGGATCCACTCAGTCGTTGGACAGCACCGACGAATCGACGAACGTGAGCCGTATTCCGCGGAGAACGGCGGTGAGCACGACGGGAAACACTCCTACATCGAGCAGGCACAACAGCGTTTCAGGGAAACGGCTTGGAACGCCTGTGAACGGGTCGAGTTCGCGGCCCCGAACACCCACAGGGCTTGTTAGCCCCGCGAGTGGTGTCCCGTCCAGAACGAGGACACCGTCCAGTGGATCGAGCACGCCACTGCCTCCATCGTTGAAGCTGTCCAGGAAGCCATCCGGTGCATCGGACACGTCCGTTTCGACGACGACAACGACACCCGCCTCCCATCGAAAAGGAAAACCGACCCCGGTCGATCAACGCGCGCCTTTCCGTTTATAGTAGTCGTCGCACGCCAATTCGAGATCAAAAAGAGAAAAAAAATAGGCAATAAACGGAGG]
[+] EMBL BI514985             [                             CCACCGAGTCGATATGGATCCACTCAGTCGTTGGACAGCACCGACGAATCGACGAACGTGAGCCGTATTCCGCGGAGAACGGCGGTGAGCACGACGGGAAACACTCCTACATCGAGCAGGCACAACAGCGTTTCAGGGAAACGGCTTGGAACGCCTGTGAACGGGTCGAGTTCGCGGCCCCGA                                                                                                                                                                                                                                                                                   ]


>consensus_442#2 GTAGGCCGGCGTCCCGACAGGGAAGCAAGCCACCGAGTCGATATGGATCCACTCAGTCGT TGGACAGCACCGACGAATCGACGAACGTGAGCCGTATTCCGCGGAGAACGGCGGTGAGCA CGACGGGAAACACTCCTACATCGAGCAGGCACAACAGCGTTTCAGGGAAACGGCTTGGAA CGCCTGTGAACGGGTCGAGTTCGCGGCCCCGAACACCCACAGGGCTTGTTAGCCCCGCGA GTGGTGTCCCGTCCAGAACGAGGACACCGTCCAGTGGATCGAGCACGCCACTGCCTCCAT CGTTGAAGCTGTCCAGGAAGCCATCCGGTGCATCGGACACGTCCGTTTCGACGACGACAA CGACACCCGCCTCCCATCGAAAAGGAAAACCGACCCCGGTCGATCAACGCGCGCCTTTCC GTTTATAGTAGTCGTCGCACGCCAATTCGAGATCAAAAAGAGAAAAAAAATAGGCAATAA ACGGAGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_442#0      GGGAGCGAAGCGCGCGAAGCGTTCCAATGGGACAATCGCGGGCATCCCGCTCCTCGCTCA 60
consensus_442#2      ------------------------------------------------------------
consensus_442#1      ------------------------------------------------------------
                                                                                 

consensus_442#0      GCGCCGGCACGCCGGACAGCCTGAGCGACAACGAGAGTTCCTTCAAGATTGCCTCTGCAA 120
consensus_442#2      ------------------------------------------------------------
consensus_442#1      --------------------------------------------GAGGTTAGAAATGGGA 16
                                                                                 

consensus_442#0      GGAAATCGAGCACACCGTACAGAAGCACAATGACACCTGGAGGTAGCCGGCCATCCTCGA 180
consensus_442#2      ------------------------------------------------------------
consensus_442#1      GCAG-TCGCGGACCTGTTTGACCAACACGGCGAAGGATTAATA-GATTGGAAGGAGTTCA 74
                                                                                 

consensus_442#0      GACCGGCTTCGAGACCAGCATCCAGACCGACCAGCAGGCCCGGAAGTAGGCCGGCGTCCC 240
consensus_442#2      ---------------------------------------------GTAGGCCGGCGTCCC 15
consensus_442#1      TCGCAGCTTTGAGACCAGATTGGGAAGAACGTAGGACGTACAATGATACGGACAAGATCC 134
                                                                   ** *     *  **

consensus_442#0      GACAGGGAAGCAAGCCACCGA-GTCGATATGGATCCACTCAGTCGTTGGACAGCAC-TGA 298
consensus_442#2      GACAGGGAAGCAAGCCACCGA-GTCGATATGGATCCACTCAGTCGTTGGACAGCAC-CGA 73
consensus_442#1      ACGATGAAGTGAAACGATTGGTGATGCTCTGTACTTGC-CGACAGAAATTCCGCGTGTTC 193
                        * * *   ** * *  *  *  * * ** *    * *    *     * **      

consensus_442#0      CGAATCGACGAACGTGAGCCGTATTCCGCGGAGAACGGCGGTGAGCACGACGGGAAACAC 358
consensus_442#2      CGAATCGACGAACGTGAGCCGTATTCCGCGGAGAACGGCGGTGAGCACGACGGGAAACAC 133
consensus_442#1      CAAGTTGGCGAAGGAAAATATAGGTTT--GGAGACAGTCAAAAGTTGCGATTGGTACGAA 251
                     * * * * **** *  *       *    *****  * *        ***  ** *  * 

consensus_442#0      TCCTAC-ATCGAGCA----GGCACAACAGCGTTTCAGGGAAACGGCTTGGAACG----CC 409
consensus_442#2      TCCTAC-ATCGAGCA----GGCACAACAGCGTTTCAGGGAAACGGCTTGGAACG----CC 184
consensus_442#1      TTCTACGATCGACCGTAATGGTACGAGTCGGTGGTGGTTGGGTAGCTTTGGACGAATTTT 311
                     * **** ***** *     ** ** *    **    *       **** * ***      

consensus_442#0      TGTGAACGGGTCGAGTTCGCGGCCCCGAACACCCACAGGGCTTGTTAGCCCCGCGAGTGG 469
consensus_442#2      TGTGAACGGGTCGAGTTCGCGGCCCCGAACACCCACAGGGCTTGTTAGCCCCGCGAGTGG 244
consensus_442#1      TATTAAAAAATGATCCTTGCCGCGCGGAGGAGTTTATGAGCCAGCTGACGCCGATTTTTG 371
                     * * **    *     * ** ** * **  *      * **  * *  * ***    * *

consensus_442#0      TGTCCCGTCCAGCCGCTCGAGGATC-CCCGTGTACGTGGGCA---CGGATATTAAATCCC 525
consensus_442#2      TGTCCCGTCCAGAA---CGAGGA-C-ACCGTCCA-GTGGAT----CGAGCACGCCACTGC 294
consensus_442#1      AGAGTT-TGAGGCAAAAGGAGGACCTCCCGTGCTCGTATCCCCTCCACATGCACGCCCCC 430
                      *     *   *      ***** *  ****    **        *             *

consensus_442#0      CACAATCGACGA--CCAGCAATATTTCCACTCATTCTACGCAAAGCAACCACT-CGACTG 582
consensus_442#2      CTCCATCGTTGAAGCTGTCCAGGAAGCCATCCGGTGCATCGGACACGTCCGTTTCGACGA 354
consensus_442#1      TCTTATCATTGGGTAAGGGAGCGAAGCGCGCGAAGCGTTCCAATGGGACAATCGCGGGCA 490
                         ***   *               *               *     *     **    

consensus_442#0      TTTCTACCGATTCTACCGG----------------------------------------- 601
consensus_442#2      CGACAACGACACCCGCCTCCCATCGAAAAGGAAAACCGACCCCGGTCGATCAACGCGCGC 414
consensus_442#1      TCC--------------------------------------------------------- 493
                                                                                 

consensus_442#0      ------------------------------------------------------------
consensus_442#2      CTTTCCGTTTATAGTAGTCGTCGCACGCCAATTCGAGATCAAAAAGAGAAAAAAAATAGG 474
consensus_442#1      ------------------------------------------------------------
                                                                                 

consensus_442#0      -------------
consensus_442#2      CAATAAACGGAGG 487
consensus_442#1      -------------
                                  




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)