These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_442#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence [GGGAGCGAAGCGCGCGAAGCGTTCCAATGGGACAATCGCGGGCATCCCGCTCCTCGCTCAGCGCCGGCACGCCGGACAGCCTGAGCGACAACGAGAGTTCCTTCAAGATTGCCTCTGCAAGGAAATCGAGCACACCGTACAGAAGCACAATGACACCTGGAGGTAGCCGGCCATCCTCGAGACCGGCTTCGAGACCAGCATCCAGACCGACCAGCAGGCCCGGAAGTAGGCCGGCGTCCCGACAGGGAAGCAAGCCACCGAGTCGATATGGATCCACTCAGTCGTTGGACAGCACTGACGAATCGACGAACGTGAGCCGTATTCCGCGGAGAACGGCGGTGAGCACGACGGGAAACACTCCTACATCGAGCAGGCACAACAGCGTTTCAGGGAAACGGCTTGGAACGCCTGTGAACGGGTCGAGTTCGCGGCCCCGAACACCCACAGGGCTTGTTAGCCCCGCGAGTGGTGTCCCGTCCAGCCGCTCGAGGATCCCCGTGTACGTGGGCACGGATATTAAATCCCCACAATCGACGACCAGCAATATTTCCACTCATTCTACGCAAAGCAACCACTCGACTGTTTCTACCGATTCTACCGG] [+] EMBL BI504100 [GGGAGCGAAGCGCGCGAAGCGTTCCAATGGGACAATCGCGGGCATCCCGCTCCTCGCTCAGCGCCGGCACGCCGGACAGCCTGAGCGACAACGAGAGTTCCTTCAAGATTGCCTCTGCAAGGAAATCGAGCACACCGTACAGAAGCACAATGACACCTGGAGGTAGCCGGCCATCCTCGAGACCGGCTTCGAGACCAGCATCCAGACCGACCAGCAGGCCCGGAAGTAGGCCGGCGTCCCGACAGGGAAGCAAGCCACCGAGTCGATATGGATCCACTCAGTCGTTGGACAGCACTGACGAATCGACGAACGTGAGCCGTATTCCGCGGAGAACGGCGGTGAGCACGACGGGAAACACTCCTACATCGAGCAGGCACAACAGCGTTTCAGGGAAACGGCTTGGAACGCCTGTGAACGGGTCGAGTTCGCGGCCCCGAACACCCACAGGGCTTGTTAGCCCCGCGAGTGGTGTCCCGTCCAGCCGCTCGAGGATCCCCGTGTACGTGGGCACGGATATTAAATCCCCACAATCGACGACCAGCAATATTTCCACTCATTCTACGCAAAGCAACCACTCGACTGTTTCTACCGATTCTACCGG] consensusID : consensus_442#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 493 fasta sequence [GAGGTTAGAAATGGGAGCAGTCGCGGACCTGTTTGACCAACACGGCGAAGGATTAATAGATTGGAAGGAGTTCATCGCAGCTTTGAGACCAGATTGGGAAGAACGTAGGACGTACAATGATACGGACAAGATCCACGATGAAGTGAAACGATTGGTGATGCTCTGTACTTGCCGACAGAAATTCCGCGTGTTCCAAGTTGGCGAAGGAAAATATAGGTTTGGAGACAGTCAAAAGTTGCGATTGGTACGAATTCTACGATCGACCGTAATGGTACGAGTCGGTGGTGGTTGGGTAGCTTTGGACGAATTTTTATTAAAAAATGATCCTTGCCGCGCGGAGGAGTTTATGAGCCAGCTGACGCCGATTTTTGAGAGTTTGAGGCAAAAGGAGGACCTCCCGTGCTCGTATCCCCTCCACATGCACGCCCCCTCTTATCATTGGGTAAGGGAGCGAAGCGCGCGAAGCGTTCCAATGGGACAATCGCGGGCATCC] [+] EMBL BI509084 [GAGGTTAGAAATGGGAGCAGTCGCGGACCTGTTTGACCAACACGGCGAAGGATTAATAGATTGGAAGGAGTTCATCGCAGCTTTGAGACCAGATTGGGAAGAACGTAGGACGTACAATGATACGGACAAGATCCACGATGAAGTGAAACGATTGGTGATGCTCTGTACTTGCCGACAGAAATTCCGCGTGTTCCAAGTTGGCGAAGGAAAATATAGGTTTGGAGACAGTCAAAAGTTGCGATTGGTACGAATTCTACGATCGACCGTAATGGTACGAGTCGGTGGTGGTTGGGTAGCTTTGGACGAATTTTTATTAAAAAATGATCCTTGCCGCGCGGAGGAGTTTATGAGCCAGCTGACGCCGATTTTTGAGAGTTTGAGGCAAAAGGAGGACCTCCCGTGCTCGTATCCCCTCCACATGCACGCCCCCTCTTATCATTGGGTAAGGGAGCGAAGCGCGCGAAGCGTTCCAATGGGACAATCGCGGGCATCC] consensusID : consensus_442#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 487 fasta sequence [GTAGGCCGGCGTCCCGACAGGGAAGCAAGCCACCGAGTCGATATGGATCCACTCAGTCGTTGGACAGCACCGACGAATCGACGAACGTGAGCCGTATTCCGCGGAGAACGGCGGTGAGCACGACGGGAAACACTCCTACATCGAGCAGGCACAACAGCGTTTCAGGGAAACGGCTTGGAACGCCTGTGAACGGGTCGAGTTCGCGGCCCCGAACACCCACAGGGCTTGTTAGCCCCGCGAGTGGTGTCCCGTCCAGAACGAGGACACCGTCCAGTGGATCGAGCACGCCACTGCCTCCATCGTTGAAGCTGTCCAGGAAGCCATCCGGTGCATCGGACACGTCCGTTTCGACGACGACAACGACACCCGCCTCCCATCGAAAAGGAAAACCGACCCCGGTCGATCAACGCGCGCCTTTCCGTTTATAGTAGTCGTCGCACGCCAATTCGAGATCAAAAAGAGAAAAAAAATAGGCAATAAACGGAGG] [+] EMBL BI516348 [GTAGGCCGGCGTCCCGACAGGGAAGCAAGCCACCGAGTCGATATGGATCCACTCAGTCGTTGGACAGCACCGACGAATCGACGAACGTGAGCCGTATTCCGCGGAGAACGGCGGTGAGCACGACGGGAAACACTCCTACATCGAGCAGGCACAACAGCGTTTCAGGGAAACGGCTTGGAACGCCTGTGAACGGGTCGAGTTCGCGGCCCCGAACACCCACAGGGCTTGTTAGCCCCGCGAGTGGTGTCCCGTCCAGAACGAGGACACCGTCCAGTGGATCGAGCACGCCACTGCCTCCATCGTTGAAGCTGTCCAGGAAGCCATCCGGTGCATCGGACACGTCCGTTTCGACGACGACAACGACACCCGCCTCCCATCGAAAAGGAAAACCGACCCCGGTCGATCAACGCGCGCCTTTCCGTTTATAGTAGTCGTCGCACGCCAATTCGAGATCAAAAAGAGAAAAAAAATAGGCAATAAACGGAGG] [+] EMBL BI514985 [ CCACCGAGTCGATATGGATCCACTCAGTCGTTGGACAGCACCGACGAATCGACGAACGTGAGCCGTATTCCGCGGAGAACGGCGGTGAGCACGACGGGAAACACTCCTACATCGAGCAGGCACAACAGCGTTTCAGGGAAACGGCTTGGAACGCCTGTGAACGGGTCGAGTTCGCGGCCCCGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_442#0 GGGAGCGAAGCGCGCGAAGCGTTCCAATGGGACAATCGCGGGCATCCCGCTCCTCGCTCA 60 consensus_442#2 ------------------------------------------------------------ consensus_442#1 ------------------------------------------------------------ consensus_442#0 GCGCCGGCACGCCGGACAGCCTGAGCGACAACGAGAGTTCCTTCAAGATTGCCTCTGCAA 120 consensus_442#2 ------------------------------------------------------------ consensus_442#1 --------------------------------------------GAGGTTAGAAATGGGA 16 consensus_442#0 GGAAATCGAGCACACCGTACAGAAGCACAATGACACCTGGAGGTAGCCGGCCATCCTCGA 180 consensus_442#2 ------------------------------------------------------------ consensus_442#1 GCAG-TCGCGGACCTGTTTGACCAACACGGCGAAGGATTAATA-GATTGGAAGGAGTTCA 74 consensus_442#0 GACCGGCTTCGAGACCAGCATCCAGACCGACCAGCAGGCCCGGAAGTAGGCCGGCGTCCC 240 consensus_442#2 ---------------------------------------------GTAGGCCGGCGTCCC 15 consensus_442#1 TCGCAGCTTTGAGACCAGATTGGGAAGAACGTAGGACGTACAATGATACGGACAAGATCC 134 ** * * ** consensus_442#0 GACAGGGAAGCAAGCCACCGA-GTCGATATGGATCCACTCAGTCGTTGGACAGCAC-TGA 298 consensus_442#2 GACAGGGAAGCAAGCCACCGA-GTCGATATGGATCCACTCAGTCGTTGGACAGCAC-CGA 73 consensus_442#1 ACGATGAAGTGAAACGATTGGTGATGCTCTGTACTTGC-CGACAGAAATTCCGCGTGTTC 193 * * * ** * * * * * * ** * * * * * ** consensus_442#0 CGAATCGACGAACGTGAGCCGTATTCCGCGGAGAACGGCGGTGAGCACGACGGGAAACAC 358 consensus_442#2 CGAATCGACGAACGTGAGCCGTATTCCGCGGAGAACGGCGGTGAGCACGACGGGAAACAC 133 consensus_442#1 CAAGTTGGCGAAGGAAAATATAGGTTT--GGAGACAGTCAAAAGTTGCGATTGGTACGAA 251 * * * * **** * * * ***** * * *** ** * * consensus_442#0 TCCTAC-ATCGAGCA----GGCACAACAGCGTTTCAGGGAAACGGCTTGGAACG----CC 409 consensus_442#2 TCCTAC-ATCGAGCA----GGCACAACAGCGTTTCAGGGAAACGGCTTGGAACG----CC 184 consensus_442#1 TTCTACGATCGACCGTAATGGTACGAGTCGGTGGTGGTTGGGTAGCTTTGGACGAATTTT 311 * **** ***** * ** ** * ** * **** * *** consensus_442#0 TGTGAACGGGTCGAGTTCGCGGCCCCGAACACCCACAGGGCTTGTTAGCCCCGCGAGTGG 469 consensus_442#2 TGTGAACGGGTCGAGTTCGCGGCCCCGAACACCCACAGGGCTTGTTAGCCCCGCGAGTGG 244 consensus_442#1 TATTAAAAAATGATCCTTGCCGCGCGGAGGAGTTTATGAGCCAGCTGACGCCGATTTTTG 371 * * ** * * ** ** * ** * * ** * * * *** * * consensus_442#0 TGTCCCGTCCAGCCGCTCGAGGATC-CCCGTGTACGTGGGCA---CGGATATTAAATCCC 525 consensus_442#2 TGTCCCGTCCAGAA---CGAGGA-C-ACCGTCCA-GTGGAT----CGAGCACGCCACTGC 294 consensus_442#1 AGAGTT-TGAGGCAAAAGGAGGACCTCCCGTGCTCGTATCCCCTCCACATGCACGCCCCC 430 * * * ***** * **** ** * * consensus_442#0 CACAATCGACGA--CCAGCAATATTTCCACTCATTCTACGCAAAGCAACCACT-CGACTG 582 consensus_442#2 CTCCATCGTTGAAGCTGTCCAGGAAGCCATCCGGTGCATCGGACACGTCCGTTTCGACGA 354 consensus_442#1 TCTTATCATTGGGTAAGGGAGCGAAGCGCGCGAAGCGTTCCAATGGGACAATCGCGGGCA 490 *** * * * * ** consensus_442#0 TTTCTACCGATTCTACCGG----------------------------------------- 601 consensus_442#2 CGACAACGACACCCGCCTCCCATCGAAAAGGAAAACCGACCCCGGTCGATCAACGCGCGC 414 consensus_442#1 TCC--------------------------------------------------------- 493 consensus_442#0 ------------------------------------------------------------ consensus_442#2 CTTTCCGTTTATAGTAGTCGTCGCACGCCAATTCGAGATCAAAAAGAGAAAAAAAATAGG 474 consensus_442#1 ------------------------------------------------------------ consensus_442#0 ------------- consensus_442#2 CAATAAACGGAGG 487 consensus_442#1 ------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |