These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_447#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 779 fasta sequence [ACTGTATTGTCTCGAGCTATTGCTGAATTAGGTATCTATCCTGCTGTCGATCCCCTTGATTCCACTTCTCGTATCATGGATCCTAATATAATTGGTGCTGAACATTATAATGTTGCTCGTGGCGTACAGAAAATCTTACAGGATTACAAATCACTTCAAGATATTATTGCTATCTTAGGTATGGATGAATTATCAGAAGAAGATAAACTCACTGTTGCACGTGCACGTAAAATTCAGAGGTTCTTGTCTCAACCATTCCAGGTTGCTGAGGTATTTACTGGTCACGCTGGTAAATTAGTACCATTAGAAGAAACTATTAAAGGATTTAAGAAAATTCTTGCTGGAGATTATGATCATTTGCCAGAAGTTGCATTCTACATGGTCGGTCCAATCGAAGAAGTAGTAGCAAAAGCAGAATCATTGGCAAAACAATAAATTAATTCNNAGTCATTAATCATGTCATTAAAAAGTAATTAAAACGATCTTCTAATAATACAAGCCTGTTTCATTTTTTCTATAAATATTAGTTTTTATCCAAAAATATAGGGATTTTTAAATAACAATATACGTGGATTAGAAGATTGTTTTCCGTTCGAAATTTCACAAAAAGTACATAAATTTTTCGAAAACATCATGAACATAATTAATCATAAATTTTATATAAATTGTGTAATTTTGTTCCAGATGTTTTCATATTAAATTAATATTGTTATTATTTATAACATATACTTTAATATTATAGTATATGTTAGAAATTAATAAAAATTTTACAAAAAAAA] [-] EMBL BI517135 [ACTGTATTGTCTCGAGCTATTGCTGAATTAGGTATCTATCCTGCTGTCGATCCCCTTGATTCCACTTCTCGTATCATGGATCCTAATATAATTGGTGCTGAACATTATAATGTTGCTCGTGGCGTACAGAAAATCTTACAGGATTACAAATCACTTCAAGATATTATTGCTATCTTAGGTATGGATGAATTATCAGAAGAAGATAAACTCACTGTTGCACGTGCACGTAAAATTCAGAGGTTCTTGTCTCAACCATTCCAGGTTGCTGAGGTATTTACTGGTCACGCTGGTAAATTAGTACCATTAGAAGAAACTATTAAAGGATTTAAGAAAATTCTTGCTGGAGATTATGATCATTTGCCAGAAGTTGCATTCTACATGGTCGGTCCAATCGAAGAAGTAGTAGCAAAAGC ] [+] EMBL BI505025 [ TGATTCCACTTCTCGTATCATGGATCCTAATATAATTGGTGCTGAACATTATAATGTTGCTCGTGGCGTACAGAAAATCTTACAGGATTACAAATCACTTCAAGATATTATTGCTATCTTAGGTATGGATGAATTATCAGAAGAAGATAAACTCACTGTTGCACGTGCACGTAAAATTCAGAGGTTCTTGTCTCAACCATTCCAGGTTGCTGAGGTATTTACTGGTCACGCTGGTAAATTAGTACCATTAGAAGAAACTATTAAAGGATTTAAGAAAATTCTTGCTGGAGATTATGATCATTTGCCAGAAGTTGCATTCTACATGGTCGGTCCAATCGAAGAAGTAGTAGCAAAAGCAGAATCATTGGCAAAACAATAAATTAATTCACAGTCATTAATCATGTCATTAAAAAGTAATTAAAACGATCTTCTAATAATACAAGCCTGTTTCATTTTTTCTATAAATATTAGTTTTTATCCAAAAATATAGGGATTTTTAAATAACAATATACGTGGATTAGAAGATTGTTTTCCGTTCGAAATTTCACAAAAAGTACATAAATTTTTCGAAAACATCATGAACATAATTAATCATAAATTTTATATAAA ] [-] EMBL BI512126 [ GAAGAAGTAGTAGCAAAAGCAGAATCATTGGCAAAACAATAAATTAATTCNNAGTCATTAATCATGTCATTAAAAAGTAATTAAAACGATCTTCTAATAATACAAGCCTGTTTCATTTTTTCTATAAATATTAGTTTTTATCCAAAAATATAGGGATTTTTAAATAACAATATACGTGGATTAGAAGATTGTTTTCCGTTCGAAATTTCACAAAAAGTACATAAATTTTTCGAAAACATCATGAACATAATTAATCATAAATTTTATATAAATTGTGTAATTTTGTTCCAGATGTTTTCATATTAAATTAATATTGTTATTATTTATAACATATACTTTAATATTATAGTATATGTTAGAAATTAATAAAAATTTTACAAAAAAAA] consensusID : consensus_447#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 370 fasta sequence [GCAATAGCTCGAGACAATACAGTTGTAGCGTCTAAATGAGCAAAGGTAGTGGCAGGCGCAGGATCTGTCAAATCATCAGCAGGTACATAAATAGCTTGCACAGAAGTAATAGATCCTAATATAATTGGTGCTGAACATTATAATGTTGCTCGTGGCGTACAGAAAATCTTACAGGATTACAAATCACTTCAAGATATTATTGCTATCTTAGGTATGGATGAATTATCAGAAGAAGATAAACTCACTGTTGCACGTGCACGTAAAATTCAGAGGTTCTTGTCTCAACCATTCCAGGTTGCTGAGGTATTTACTGGTCACGCTGGTAAATTAGTACCATTAGAAGAAACTATTAAAGGATTTAAGAAAATTC] [+] EMBL BI511537 [GCAATAGCTCGAGACAATACAGTTGTAGCGTCTAAATGAGCAAAGGTAGTGGCAGGCGCAGGATCTGTCAAATCATCAGCAGGTACATAAATAGCTTGCACAGAAGTAATAGATCCTAATATAATTGGTGCTGAACATTATAATGTTGCTCGTGGCGTACAGAAAATCTTACAGGATTACAAATCACTTCAAGATATTATTGCTATCTTAGGTATGGATGAATTATCAGAAGAAGATAAACTCACTGTTGCACGTGCACGTAAAATTCAGAGGTTCTTGTCTCAACCATTCCAGGTTGCTGAGGTATTTACTGGTCACGCTGGTAAATTAGTACCATTAGAAGAAACTATTAAAGGATTTAAGAAAATTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_447#0 ---------------------ACTGTATTGTCT---CGAGCTATTGCTGAATTAGGT--- 33 consensus_447#1 GCAATAGCTCGAGACAATACAGTTGTAGCGTCTAAATGAGCAAAGGTAGTGGCAGGCGCA 60 **** **** **** * * * *** consensus_447#0 --ATCTATCCTGCTGTCGATC--CCCTTGATTCCACTTCTCGTA--TCATGGATCCTAAT 87 consensus_447#1 GGATCTGTCAAATCATCAGCAGGTACATAAATAGCTTGCACAGAAGTAATAGATCCTAAT 120 **** ** ** * * * * * * * * * ** ********* consensus_447#0 ATAATTGGTGCTGAACATTATAATGTTGCTCGTGGCGTACAGAAAATCTTACAGGATTAC 147 consensus_447#1 ATAATTGGTGCTGAACATTATAATGTTGCTCGTGGCGTACAGAAAATCTTACAGGATTAC 180 ************************************************************ consensus_447#0 AAATCACTTCAAGATATTATTGCTATCTTAGGTATGGATGAATTATCAGAAGAAGATAAA 207 consensus_447#1 AAATCACTTCAAGATATTATTGCTATCTTAGGTATGGATGAATTATCAGAAGAAGATAAA 240 ************************************************************ consensus_447#0 CTCACTGTTGCACGTGCACGTAAAATTCAGAGGTTCTTGTCTCAACCATTCCAGGTTGCT 267 consensus_447#1 CTCACTGTTGCACGTGCACGTAAAATTCAGAGGTTCTTGTCTCAACCATTCCAGGTTGCT 300 ************************************************************ consensus_447#0 GAGGTATTTACTGGTCACGCTGGTAAATTAGTACCATTAGAAGAAACTATTAAAGGATTT 327 consensus_447#1 GAGGTATTTACTGGTCACGCTGGTAAATTAGTACCATTAGAAGAAACTATTAAAGGATTT 360 ************************************************************ consensus_447#0 AAGAAAATTCTTGCTGGAGATTATGATCATTTGCCAGAAGTTGCATTCTACATGGTCGGT 387 consensus_447#1 AAGAAAATTC-------------------------------------------------- 370 ********** consensus_447#0 CCAATCGAAGAAGTAGTAGCAAAAGCAGAATCATTGGCAAAACAATAAATTAATTCNNAG 447 consensus_447#1 ------------------------------------------------------------ consensus_447#0 TCATTAATCATGTCATTAAAAAGTAATTAAAACGATCTTCTAATAATACAAGCCTGTTTC 507 consensus_447#1 ------------------------------------------------------------ consensus_447#0 ATTTTTTCTATAAATATTAGTTTTTATCCAAAAATATAGGGATTTTTAAATAACAATATA 567 consensus_447#1 ------------------------------------------------------------ consensus_447#0 CGTGGATTAGAAGATTGTTTTCCGTTCGAAATTTCACAAAAAGTACATAAATTTTTCGAA 627 consensus_447#1 ------------------------------------------------------------ consensus_447#0 AACATCATGAACATAATTAATCATAAATTTTATATAAATTGTGTAATTTTGTTCCAGATG 687 consensus_447#1 ------------------------------------------------------------ consensus_447#0 TTTTCATATTAAATTAATATTGTTATTATTTATAACATATACTTTAATATTATAGTATAT 747 consensus_447#1 ------------------------------------------------------------ consensus_447#0 GTTAGAAATTAATAAAAATTTTACAAAAAAAA 779 consensus_447#1 -------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |