These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_456#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 546 fasta sequence [GGACGACCGCATGATCCCCTGGCTTGGCTTTACGATAGCCTTTCATGACCTCGCCACGAGCATTTCCGAGGCCAGGCTATAGCTGCCAAGGATTTAGAAGAACGTCGTAGCCATTATGAACCATCACTCGGACCTGGTATACCAGATGATGTCGATCATCACTTTAATCTCGAAGAAAATGATTTTGTCCCACACTTTCAGAGGGTATCCATATCTGGTGAAGATACTTCCGGGGTACCTTTGGAAGATTTACAGCAAGCGTCCCAGATGTTGGTTCAAGCATTGGCAATACGTGAAAAATACATGAATAATTCTAAACAGAGTTTTCCTTCTATAACATCACGGTTTTTACGCAGCATCGATAAAAGACCAGTGAGCAGTGACGATGAAGTTCAACATGATGATCGTAAAGCTATCGCTGGTATTTATTCCAAATTTACGAAATTATATTTTTCTTTTAACATTTAATTTTTTCTATCAATCCCTTGATCAATTCTTTTTTATGTTAATCATATGATATTTTTGATATATTAAATTTTTATGATG] [+] EMBL BI514116 [GGACGACCGCATGATCCCCTGGCTTGGCTTTACGATAGCCTTTCATGACCTCGCCACGAGCATTTCCGAGGCCAGGCTATAGCTGCCAAGGATTTAGAAGAACGTCGTAGCCATTATGAACCATCACTCGGACCTGGTATACCAGATGATGTCGATCATCACTTTAATCTCGAAGAAAATGATTTTGTCCCACACTTTCAGAGGGTATCCATATCTGGTGAAGATACTTCCGGGGTACCTTTGGAAGATTTACAGCAAGCGTCCCAGATGTTGGTTCAAGCATTGGCAATACGTGAAAAATACATGAATAATTCTAAACAGAGTTTTCCTTCTATAACATCACGGTTTTTACGCAGCATCGATAAAAGACCAGTGAGCAGTGACGATGAAGTTCAACATGATGATCGTAAAGCTATCGCTGGTATTTATTCCAAATTTACGAAATTATATTTTTCTTTTAACATTTAATTTTTTCTATCAATCCCTTGATCAATTCTTTTTTATGTTAATCATATGATATTTTTGATATATTAAATTTTTATGATG] [+] EMBL BI514021 [GGACGACCGCATGATCCCCTGGCTTGGCTTTACGATAGCCTTTCATGACCTCGCCACGAGCATTTCCGAGGCCAGGCTATAGCTGCCAAGGATTTAGAAGAACGTCGTAGCCATTATGAACCATCACTCGGACCTGGTATACCAGATGATGTCGATCATCACTTTAATCTCGAAGAAAATGATTTTGTCCCACACTTTCAGAGGGTATCCATATCTGGTGAAGATACTTCCGGGGTACCTTTGGAAGATTTACAGCAAGCGTCCCAGATGTTGGTTCAAGCATTGGCAATACGTGAAAAATACATGAATAATTCTAAACAGAGTTTTCCTTCTATAACATCACGGTTTTTACGCAGCATCGATAAAAGACCAGTGAGCAGTGACGATGAAGTTCAACATGATGATCGTAAAGCTATCGCTGGTATTTATTCCAAATTTACGAAATTATATTTTTCTTTTAACATTTAATTTTTTCTATCAATCCCTTGATCAATTCTTTTTTATGTTAATCATATGATATTTTTGATATATTAAATT ] consensusID : consensus_456#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 512 fasta sequence [TTGTTCACCTCTCTTCTAAAGGATTCTAAAGGATTTTGTGAATGACACGTATACATCGTGCATGCAACAGACGTAAAATACAAGACAAGGAACGTGTAACATGTTCGCCGGTGCGAACGAGTCGAAACGATGGCTCAGGGATAATAGGATACTCTTGAGAGCTGCCAAGGATTTAGAAGAACGTCGTAGCCATTATGAACCATCACTCGGACCTGGTATACCAGATGATGTCGATCATCACTTTAATCTCGAAGAAAATGATTTTGTCCCACACTTTCAGAGGGTATCCATATCTGGTGAAGATACTTCCGGGGTACCTTTGGAAGATTTACAGCAAGCGTCCCAGATGTTGGTTCAAGCATTGGCAATACGTGAAAAATACATGAATAATTCTAAACAGAGTTTTCCTTCTATAACATCACGGTTTTTACGCAGCATCGATAAAAGACCAGTGAGCAGTGACGATGAAGTTCAACATGATGATCGTAAAGCTATCGCTGATCATCCTGTAC] [+] EMBL BI515113 [TTGTTCACCTCTCTTCTAAAGGATTCTAAAGGATTTTGTGAATGACACGTATACATCGTGCATGCAACAGACGTAAAATACAAGACAAGGAACGTGTAACATGTTCGCCGGTGCGAACGAGTCGAAACGATGGCTCAGGGATAATAGGATACTCTTGAGAGCTGCCAAGGATTTAGAAGAACGTCGTAGCCATTATGAACCATCACTCGGACCTGGTATACCAGATGATGTCGATCATCACTTTAATCTCGAAGAAAATGATTTTGTCCCACACTTTCAGAGGGTATCCATATCTGGTGAAGATACTTCCGGGGTACCTTTGGAAGATTTACAGCAAGCGTCCCAGATGTTGGTTCAAGCATTGGCAATACGTGAAAAATACATGAATAATTCTAAACAGAGTTTTCCTTCTATAACATCACGGTTTTTACGCAGCATCGATAAAAGACCAGTGAGCAGTGACGATGAAGTTCAACATGATGATCGTAAAGCTATCGCTGATCATCCTGTAC] consensusID : consensus_456#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 491 fasta sequence [GGTACAGGTGGTGGGACTTCCTTGAGACTCGCATCGCATGAATTGCCTAATGAAATTTCTGCTCCATACGAAGTTCCACAATTTCCAATTGAACAAATTGAGAAAAAGCTTTTGATACAAAGACAATTAACCGTCAAAGCTGCCAAGGATTTAGAAGAACGTCGTAGCCATTATGAACCATCACTCGGACCTGGTATACCAGATGATGTCGATCATCACTTTAATCTCGAAGAAAATGATTTTGTCCCACACTTTCAGAGGGTATCCATATCTGGTGAAGATACTTCCGGGGTACCTTTGGAAGATTTACAGCAAGCGTCCCAGATGTTGGTTCAAGCATTGGCAATACGTGAAAAATACATGAATAATTCTAAACAGAGTTTTCCTTCTATAACATCACGGTTTTTACGCAGCATCGATAAAAGACCNNTGAGCAGTGACGATGAAGTTCAACATGATGATCGTAAAGCTATCGCTGATCATCCTGTACA] [+] EMBL BI511139 [GGTACAGGTGGTGGGACTTCCTTGAGACTCGCATCGCATGAATTGCCTAATGAAATTTCTGCTCCATACGAAGTTCCACAATTTCCAATTGAACAAATTGAGAAAAAGCTTTTGATACAAAGACAATTAACCGTCAAAGCTGCCAAGGATTTAGAAGAACGTCGTAGCCATTATGAACCATCACTCGGACCTGGTATACCAGATGATGTCGATCATCACTTTAATCTCGAAGAAAATGATTTTGTCCCACACTTTCAGAGGGTATCCATATCTGGTGAAGATACTTCCGGGGTACCTTTGGAAGATTTACAGCAAGCGTCCCAGATGTTGGTTCAAGCATTGGCAATACGTGAAAAATACATGAATAATTCTAAACAGAGTTTTCCTTCTATAACATCACGGTTTTTACGCAGCATCGATAAAAGACCNNTGAGCAGTGACGATGAAGTTCAACATGATGATCGTAAAGCTATCGCTGATCATCCTGTACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_456#1 TTGTTCACCTCTCTTCTAAAGGATTCTAAAGGATTTTGTGAATGACACGTATACATCGTG 60 consensus_456#2 -----------------GGTACAGGTGGTGGGACTTCCT---TGAGACTCGCATCGCATG 40 consensus_456#0 ------------------------------------------------------------ consensus_456#1 CATGCAACAGACGTAAAATACAAGACAAGGAACGTGTAACATGTTCGCCGGTGCGA--AC 118 consensus_456#2 AAT-TGCCTAATGAAATTTCTGCTCCATACGAAGTTCCACAATTTC--CAAT-TGA--AC 94 consensus_456#0 ---------------------GGACGACCGCATGATCCCCTGGCTTGGCTTTACGATAGC 39 * * * * * * * ** * consensus_456#1 GAGTCGAAACGATGGCTCAGGGATAATAGGA--TACTCTTGAGAGCTGCCAAGGATTTAG 176 consensus_456#2 AAATTGAGAAAAAGCTTTTGATACAAAGACAATTAACCGTCAAAGCTGCCAAGGATTTAG 154 consensus_456#0 CTTTCATGACCTCGCCACGAGCATTTCCGAGGCCAGGCT--ATAGCTGCCAAGGATTTAG 97 * * * * * * * ***************** consensus_456#1 AAGAACGTCGTAGCCATTATGAACCATCACTCGGACCTGGTATACCAGATGATGTCGATC 236 consensus_456#2 AAGAACGTCGTAGCCATTATGAACCATCACTCGGACCTGGTATACCAGATGATGTCGATC 214 consensus_456#0 AAGAACGTCGTAGCCATTATGAACCATCACTCGGACCTGGTATACCAGATGATGTCGATC 157 ************************************************************ consensus_456#1 ATCACTTTAATCTCGAAGAAAATGATTTTGTCCCACACTTTCAGAGGGTATCCATATCTG 296 consensus_456#2 ATCACTTTAATCTCGAAGAAAATGATTTTGTCCCACACTTTCAGAGGGTATCCATATCTG 274 consensus_456#0 ATCACTTTAATCTCGAAGAAAATGATTTTGTCCCACACTTTCAGAGGGTATCCATATCTG 217 ************************************************************ consensus_456#1 GTGAAGATACTTCCGGGGTACCTTTGGAAGATTTACAGCAAGCGTCCCAGATGTTGGTTC 356 consensus_456#2 GTGAAGATACTTCCGGGGTACCTTTGGAAGATTTACAGCAAGCGTCCCAGATGTTGGTTC 334 consensus_456#0 GTGAAGATACTTCCGGGGTACCTTTGGAAGATTTACAGCAAGCGTCCCAGATGTTGGTTC 277 ************************************************************ consensus_456#1 AAGCATTGGCAATACGTGAAAAATACATGAATAATTCTAAACAGAGTTTTCCTTCTATAA 416 consensus_456#2 AAGCATTGGCAATACGTGAAAAATACATGAATAATTCTAAACAGAGTTTTCCTTCTATAA 394 consensus_456#0 AAGCATTGGCAATACGTGAAAAATACATGAATAATTCTAAACAGAGTTTTCCTTCTATAA 337 ************************************************************ consensus_456#1 CATCACGGTTTTTACGCAGCATCGATAAAAGACCAGTGAGCAGTGACGATGAAGTTCAAC 476 consensus_456#2 CATCACGGTTTTTACGCAGCATCGATAAAAGACCNNTGAGCAGTGACGATGAAGTTCAAC 454 consensus_456#0 CATCACGGTTTTTACGCAGCATCGATAAAAGACCAGTGAGCAGTGACGATGAAGTTCAAC 397 ********************************** ************************ consensus_456#1 ATGATGATCGTAAAGCTATCGCTGAT---CATCCTGTAC--------------------- 512 consensus_456#2 ATGATGATCGTAAAGCTATCGCTGAT---CATCCTGTACA-------------------- 491 consensus_456#0 ATGATGATCGTAAAGCTATCGCTGGTATTTATTCCAAATTTACGAAATTATATTTTTCTT 457 ************************ * ** * * consensus_456#1 ------------------------------------------------------------ consensus_456#2 ------------------------------------------------------------ consensus_456#0 TTAACATTTAATTTTTTCTATCAATCCCTTGATCAATTCTTTTTTATGTTAATCATATGA 517 consensus_456#1 ----------------------------- consensus_456#2 ----------------------------- consensus_456#0 TATTTTTGATATATTAAATTTTTATGATG 546 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |