These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_49#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 739 fasta sequence [AGAGAAGAGGTACCTTTCTTCAAATTTTCGTATAATATTCTTCAAACTACTGTGATCAATTGGTTCGAAAAAATGCCGCGCGGTAAATATGTCAGTTACAAAGGCCGGAGTCGTCACTTCACTAACCCCGAGGAACTGGAGGAGCAACGACGCCAGGAGG--AAAAAAAACTCCAATGGAGAAAAAATAAAGGAAAGGATAGCTCTAGTGATGAGGATGAGGAACCCAAAGCACATGGTGATTCAATAAAAAATCATAGTTCTTCAGGGACAGATACTGAAAGTGAATCAGAATCAGAATCTGAAACTGAAGGAAAAACAAAGGGTGTAGAAAATTTAATTCAAGTTGAAAATCCAAATAGAGTTCAAAAAAAGGCAAAAAAATTATCGCAATTAAATCAATCTCTAGACTCAGCAAAACCAGATTTATCTCGGAGAGAACGAGAACAATTAGAAAGACAAAGAGCATATGCAAACTACCAGAAATTACATGCAGCAGGTAAAACGGATGAAGCACGTGCGGATTTAGCACGATTAGCTATAGTTAAACAACAACGAGAAGAAGCGGCTAGGAAACGAGAAGCCGAGAAGAAACAGAAGGAGCTTGCCCTACAGAGAAAAACGGAACTTANNCNAAAAGCACTCGGCAAAAAATCCTANNACGTTTCATTTTGATCAATTATAAAATATTTGATGTCACAGCAATTATTACATTAACAATGATGAACAGTTTAAAATCTAC] [+] EMBL BI512787 [AGAGAAGAGGTACCTTTCTTCAAATTTTCGTATAATATTCTTCAAACTACTGTGATCAATTGGTTCGAAAAAATGCCGCGCGGTAAATATGTCAGTTACAAAGGCCGGAGTCGTCACTTCACTAACCCCGAGGAACTGGAGGAGCAACGACGCCAGGAGG AAAAAAAACTCCAATGGAGAAAAAATAAAGGAAAGGATAGCTCTAGTGATGAGGATGAGGAACCCAAAGCACATGGTGATTCAATAAAAAATCATAGTTCTTCAGGGACAGATACTGAAAGTGAATCAGAATCAGAATCTGAAACTGAAGGAAAAACAAAGGGTGTAGAAAATTTAATTCAAGTTGAAAATCCAAATAGAGTTCAAAAAAAGGCAAAAAAATTATCGCAATTAAATCAATCTCTAGATTCAGCAAAACCAGATTTATCTCGGAGAGAACGAGAACAATTNNAAAGACAAAGAGCATATGCAAACTACCAGAAATTACATGCAGCAGGTAAAACGGATGAAGCACGTGCGGATTTA ] [+] EMBL BI515996 [ AATTTTCGTATAATATTCTTCAAACTACTGTGATCAATTGGTTCGAAAAAATGCCGCGCGGTAAATATGTCAGTTACAAAGGCCGGAGTCGTCACTTCACTAACCCCGAGGAACTGGAGGAGCAACGACGCCAGGAGG AAAAAAAACTCCAATGGAGAAAAAATAAAGGAAAGGATAGCTCTAGTGATGAGGATGAGGAACCCAAAGCACATGGTGATTCAATAAAAAATCATAGTTCTTCAGGGACAGATACTGAAAGTGAATCAGAATCAGAATCTGAAACTGAAGGAAAAACAAAGGGTGTAGAAAATTTAATTCAAGTTGAAAATCCAAATAGAGTTCAAAAAAAGGCAAAAAAATTATCGCAATTAAATCAATCTCTAGACTCAGCAAAACCAGATTTATCTCGGAGAGAACGAGAACAATTAGAAAGACAAAGAGCATATGCAAACTACCAGAAATTACATGCAGCAGGTAAAACGGATGAAGCACGTGCGGATTTAGCACGATTAG ] [+] EMBL BI505615 [ CGGTAAATATGTCAGTTACAAAGGCCGGAGTCGTCACTTCACTAACCCCGAGGAACTGGAGGAGCAACGACGCCAGGAGGAAAAAAAAAACTCCAATGGAGAAAAAATAAAGGAAAGGATAGCTCTAGTGATGAGGATGAGGAACCCAAAGCACATGGTGATTCAATAAAAAATCATAGTTCTTCAGGGACAGATACTGAAAGTGAATCAGAATCAGAATCTGAAACTGAAGGAAAAACAAAGGGTGTAGAAAATTTAATTCAAGTTGAAAATCCAAATAGAGTTCAAAAAAAGGCAAAAAAATTATCGCAATTAAATCAATCTCTAGACTCAGCAAAACCAGATTTATCTCGGAGAGAACGAGAACAATTAGAAAGACAAAGAGCATATGCAAACTACCAGAAATTACATGCAGCAGGTAAAACGGATGAAGCACGTGCGGATTTAGCACGATTAGCTATAGTTAAACAACAACGAGAAGAAGCGGCTAGGAAACGAGAAGCCGAGAAGAAACAGAAGGAGCTTGCCCTACAGAGAAAAACGGAACTTAGGCAAAAAGCA ] [+] EMBL BI505884 [ TCAGTTACAAAGGCCGGAGTCGTCACTTCACTAACCCCGAGGAACTGGAGGAGCAACGACGCCAGGAGG AAAAAAAACTCCAATGGAGAAAAAATAAAGGAAAGGATAGCTCTAGTGATGAGGATGAGGAACCCAAAGCACATGGTGATTCAATAAAAAATCATAGTTCTTCAGGGACAGATACTGAAAGTGAATCAGAATCAGAATCTGAAACTGAAGGAAAAACAAAGGGTGTAGAAAATTTAATTCAAGTTGAAAATCCAAATAGAGTTCAAAAAAAGGCAAAAAAATTATCGCAATTAAATCAATCTCTAGACTCAGCAAAACCAGATTTATCTCGGAGAGAACGAGAACAATTAGAAAGACAAAGAGCATATGCAAACTACCAGAAATTACATGCAGCAGGTAAAACGGATGAAGCACGTGCGGATTTAGCACGATTAGCTATAGTTAAACAACAACGAGAAGAAGCGGCTAGGAAACGAGAAGCCGAGAAGAAACAGAAGGAGCTTGCCCTACAGAGAAAAACGGAACTTANNCNAAAAGCACTCGGCAAAAAATCCTANNACGTTTCATTTTGATCAATTATAAAATATTTGATGTCACAGCAATTATTACATTAACAATGATGAACAGTTTAAAATCTAC] [+] EMBL BI515289 [ CAGTTACAAAGGCCGGAGTCGTCACTTCACTAACCCCGAGGAACTGGAGGAGCAACGACGCCAGGAGG AAAAAAAACTCCAATGGAGAAAAAATAAAGGAAAGGATAGCTCTAGTGATGAGGATGAGGAACCCAAAGCACATGGTGATTCAATAAAAAATCATAGTTCTTCAGGGACAGATACTGAAAGTGAATCAGAATCAGAATCTGAAACTGAAGGAAAAACAAAGGGTGTAGAAAATTTAATTCAAGTTGAAAATCCAAATAGAGTTCAAAAAAAGGCAAAAAAATTATCGCAATTAAATCAATCTCTAGACTCAGCAAAACCAGATTTATCTCGGAGAGAACGAGAACAATTAGAAAGACAAAGAGCATATGCAAACTACCAGAAATTACATGCAGCAGGTAAAACGGATGAAGCACGTGCGGATTTAGCACGATTAGCTATAGTTAAACAACAACGAGAAGAAGCGGC ] [+] EMBL BI515581 [ TTACAAAGGCCGGAGTCGTCACTTCACTAACCCCGAGGAACTGGAGGAGCAACGACGCCAGGAGG AAAAAAAACTCCAATGGAGAAAAAATAAAGGAAAGGATAGCTCTAGTGATGAGGATGAGGAACCCAAAGCACATGGTGATTCAATAAAAAATCATAGTTCTTCAGGGACAGATACTGAAAGTGAATCAGAATCAGAATCTGAAACTGAAGGAAAAACAAAGGGTGTAGAAAATTTAATTCAAGTTGAAAATCCAAATAGAGTTCAAAAAAAGGCAAAAAAATTATCGCAATTAAATCAATCTCTAGACTCAGCAAAACCAGATTTATCTCGGAGAGAACGAGAACAATTAGAAAGACAAAGAGCATATGCAAACTACCAGAAATTACATGCAGCAGGTAAAACGGATGAAGCACGTGCGGATTTAGCACGATTAGCTATAGTTAAACAACAACGAGAAGAAG ] [+] EMBL BI504353 [ ACTTCACTAACCCCGAGGAACTGGAGGAGCAACGACGCCAGGAGG AAAAAAAACTCCAATGGAGAAAAAATAAAGGAAAGGATAGCTCTAGTGATGAGGATGAGGAACCCAAAGCACATGGTGATTCAATAAAAAATCATAGTTCTTCAGGGACAGATACTGAAAGTGAATCAGAATCAGAATCTGAAACTGAAGGAAAAACAAAGGGTGTAGAAAATTTAATTCAAGTTGAAAATCCAAATAGAGTTCAAAAAAAGGCAAAAAAATTATCGCAATTAAATCAATCTCTAGACTCAGCAAAACCAGATTTATCTCGGAGAGAACGAGAACAATTAGAAAGACAAAGAGCATATGCAAACTACCAGAAATTACATGCAGCAGGTAAAACGGATGAAGCACGTGCGG ] [+] EMBL BI514451 [ ACTAACCCCGAGGAACTGGAGGAGCAACGACGCCAGGAGG AAAAAAAACTCCAATGGAGAAAAAATAAAGGAAAGGATAGCTCTAGTGATGAGGATGAGGAACCCAAAGCACATGGTGATTCAATAAAAAATCATAGTTCTTCAGGGACAGATACTGAAAGTGAATCAGAATCAGAATCTGAAACTGAAGGAAAAACAAAGGGTGTAGAAAATTTAATTCAAGTTGAAAATCCAAATAGAGTTCAAAAAAAGGCAAAAAAATTATCGCAATTAAATCAATCTCTAGATTCAGCAAAACCAGATTTATCTCGGAGAGAACGAGAACAATTAGAAAGACAAAGAGCATATGCAAACTACCAGAAATTACATGCAGCAGGTAAAACGGATGAAGCACGTGCGGATTTAGCACGATTAGCTATAGTTAAAC ] consensusID : consensus_49#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 512 fasta sequence [ATCAATTGGTTCGAAAAAATGCCGCGCGGTAAATATGTCAGTTACAAAGGCCGGAGTCGTCACTTCACTAACCCCGAGGAACTGGAGGAGCAACGACGCCAGGAGGAAAAAAAACTCCAATGGAGAAAAAATAAAGGAAAGGATAGCTCTAGTGATGAGGATGAGGAACCCAAAGCACATGGTGATTCAATAAAAAATCATAGTTCTTCAGGGACAGATACTGAAAGTGAATCAGAATCAGAATCTGAAACTGAAGGAAAAACAAAGGGTGTAGAAAATTTAATTCAAGTTGAAAATCCAAATAGAGTTCAAAAAAAGGCAAAAAAATTATCGCAATTAAATCAATCTCTAGACTCAGCAAAACCAGATTTATCTCGGAGAGAACGAGAACAATTAGAAAGACAAAGAGCATATGCAAACTACCAGAAATTACATGCAACAAGGAAACGATCTCTCCTAGAAAAAAGAAAAAAAAAAAAAAAAAGNAACGGGATAATATTCAAACGCATAGA] [+] EMBL BI514414 [ATCAATTGGTTCGAAAAAATGCCGCGCGGTAAATATGTCAGTTACAAAGGCCGGAGTCGTCACTTCACTAACCCCGAGGAACTGGAGGAGCAACGACGCCAGGAGGAAAAAAAACTCCAATGGAGAAAAAATAAAGGAAAGGATAGCTCTAGTGATGAGGATGAGGAACCCAAAGCACATGGTGATTCAATAAAAAATCATAGTTCTTCAGGGACAGATACTGAAAGTGAATCAGAATCAGAATCTGAAACTGAAGGAAAAACAAAGGGTGTAGAAAATTTAATTCAAGTTGAAAATCCAAATAGAGTTCAAAAAAAGGCAAAAAAATTATCGCAATTAAATCAATCTCTAGACTCAGCAAAACCAGATTTATCTCGGAGAGAACGAGAACAATTAGAAAGACAAAGAGCATATGCAAACTACCAGAAATTACATGCAACAAGGAAACGATCTCTCCTAGAAAAAAGAAAAAAAAAAAAAAAAAGNAACGGGATAATATTCAAACGCATAGA] [+] EMBL BI514440 [ATCAATTGGTTCGAAAAAATGCCGCGCGGTAAATATGTCAGTTACAAAGGCCGGAGTCGTCACTTCACTAACCCCGAGGAACTGGAGGAGCAACGACGCCAGGAGGAAAAAAAACTCCAATGGAGAAAAAATAAAGGAAAGGATAGCTCTAGTGATGAGGATGAGGAACCCAAAGCACATGGTGATTCAATAAAAAATCATAGTTCTTCAGGGACAGATACTGAAAGTGAATCAGAATCAGAATCTGAAACTGAAGGAAAAACAAAGGGTGTAGAAAATTTAATTCAAGTTGAAAATCCAAATAGAGTTCAAAAAAAGGCAAAAAAATTATCGCAATTAAATCAATCTCTAGACTCAGCAAAACCAGATTTATCTCGGAGAGAACGAGAACAATTAGAAAGACAAAGAGCATATGCAAACTACCAGAAATTACATGCAACAAG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_49#0 AGAGAAGAGGTACCTTTCTTCAAATTTTCGTATAATATTCTTCAAACTACTGTGATCAAT 60 consensus_49#1 ------------------------------------------------------ATCAAT 6 ****** consensus_49#0 TGGTTCGAAAAAATGCCGCGCGGTAAATATGTCAGTTACAAAGGCCGGAGTCGTCACTTC 120 consensus_49#1 TGGTTCGAAAAAATGCCGCGCGGTAAATATGTCAGTTACAAAGGCCGGAGTCGTCACTTC 66 ************************************************************ consensus_49#0 ACTAACCCCGAGGAACTGGAGGAGCAACGACGCCAGGAGGAAAAAAAACTCCAATGGAGA 180 consensus_49#1 ACTAACCCCGAGGAACTGGAGGAGCAACGACGCCAGGAGGAAAAAAAACTCCAATGGAGA 126 ************************************************************ consensus_49#0 AAAAATAAAGGAAAGGATAGCTCTAGTGATGAGGATGAGGAACCCAAAGCACATGGTGAT 240 consensus_49#1 AAAAATAAAGGAAAGGATAGCTCTAGTGATGAGGATGAGGAACCCAAAGCACATGGTGAT 186 ************************************************************ consensus_49#0 TCAATAAAAAATCATAGTTCTTCAGGGACAGATACTGAAAGTGAATCAGAATCAGAATCT 300 consensus_49#1 TCAATAAAAAATCATAGTTCTTCAGGGACAGATACTGAAAGTGAATCAGAATCAGAATCT 246 ************************************************************ consensus_49#0 GAAACTGAAGGAAAAACAAAGGGTGTAGAAAATTTAATTCAAGTTGAAAATCCAAATAGA 360 consensus_49#1 GAAACTGAAGGAAAAACAAAGGGTGTAGAAAATTTAATTCAAGTTGAAAATCCAAATAGA 306 ************************************************************ consensus_49#0 GTTCAAAAAAAGGCAAAAAAATTATCGCAATTAAATCAATCTCTAGACTCAGCAAAACCA 420 consensus_49#1 GTTCAAAAAAAGGCAAAAAAATTATCGCAATTAAATCAATCTCTAGACTCAGCAAAACCA 366 ************************************************************ consensus_49#0 GATTTATCTCGGAGAGAACGAGAACAATTAGAAAGACAAAGAGCATATGCAAACTACCAG 480 consensus_49#1 GATTTATCTCGGAGAGAACGAGAACAATTAGAAAGACAAAGAGCATATGCAAACTACCAG 426 ************************************************************ consensus_49#0 AAATTACATGCAGCAGGTAAAACGGATGAAGCACGTGCGGATTTAGCACGATTAGCTATA 540 consensus_49#1 AAATTACATGCAACAAGGAAA------------CGATCTCTCCTAGAAAAA--------A 466 ************ ** * *** ** * *** * * * consensus_49#0 GTTAAACAACAACGAGAAGAAGCGGCTAGGAAACGAGAAGCCGAGAAGAAACAGAAGGAG 600 consensus_49#1 GAAAAAAAAAAAAAAAAAGNAACGGGATAATATTCAAACGCATAGA-------------- 512 * *** ** ** * *** * *** * * * ** *** consensus_49#0 CTTGCCCTACAGAGAAAAACGGAACTTANNCNAAAAGCACTCGGCAAAAAATCCTANNAC 660 consensus_49#1 ------------------------------------------------------------ consensus_49#0 GTTTCATTTTGATCAATTATAAAATATTTGATGTCACAGCAATTATTACATTAACAATGA 720 consensus_49#1 ------------------------------------------------------------ consensus_49#0 TGAACAGTTTAAAATCTAC 739 consensus_49#1 ------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |