These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_50#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1072 fasta sequence [AAAAAAAAATATTATGGAATATAAATCGTTCTTTCTTATATTGATAACTCTTATATTGATAAGATTGTATTATATGATATCATAATTAAATTACAGTTATTATTTTATTGCACGTAGATATCTATTTGAATAGAGAAATTGATAGAGATATTAAAGAGTTCATGGCATGGCATTTTTATACTTCTCTTTCCAATAATCGAATTTATCACTCATTAGATTTTTCTCTAGCTTTGGTTCTTCGTTGATGTTTAGATAATAATTATCACTTCCCATTGGCTCCCAATTCACTGTCACATCTTCGTCTAATACTGATGTTGGATTTCCATCCTTTGCAAAATTTGTCCACATTTTGGTCATAATATTTATCACCTTCTCTGCTGAGGAATCCGGTTCGGGTAAATTCTTGAAAATGTTGGAATAAAATAAGTAACCCACATCATCGGCATGTGCAACTCCATCGCTGACACCATGTAAACTTTTCATAAAACCAGTTGGCGCCTCATAAGAAGAACAGATATTGATAAATAGGAGACGAAATTCGATTCTTCATAATATCAAGCGATAATAGCTCTCCAGCATCGAAGAAAATATCGCTCAGCATCCTGATATATTCCGTTCAAATTATCTTTCGACACTTGCTTCTCCCCAAAATAGAATTTTTTCAAGCTTTGTCCACTTTCCTTCTTCGTATTCGAATCGGTGTAATTCAAATCGTCTGGTAAAAATTGCTCTGGTTCCGTGTTCAATACATCGATTTTATCTATCATATTTTGCGCCATAAATGCACATTCATCGGCTGTAATTCCAGACATCACGGGCACATCCGCGATTCTTCCAGATTTTAATAGAGTCCAAGGATCAGTCGGGAGGAATACGTCTTGTCCCATATCCACTTCAATCGATGGAACGAAAGCATTCGTATGCCCAGACAATACGTTCTGTTTCTTCATTATTTCGCTACTTGCTGCAGTGATATCTTCAACGT-GGAATTCGGTCAATTTTCTGACCAATTCCTCAGAATCTGTAGTTGTTATCCCCAAAGCTGCACCCAACATAAACGCTTGTTCCCTTG] [-] EMBL BE844678 [AAAAAAAAATATTATGGAATATAAATCGTTCTTTCTTATATTGATAACTCTTATATTGATAAGATTGTATTATATGATATCATAATTAAATTACAGTTATTATTTTATTGCACGTAGATATCTATTTGAATAGAGAAATTGATAGAGATATTAAAGAGTTCATGGCATGGCATTTTTATACTTCTCTTTCCAATAATCGAATTTATCACTCATTAGATTTTTCTCTAGCTTTGGTTCTTCGTTGATGTTTAGATAATAATTATCACTTCCCATTGGCTCCCAATTCACTGTCACATCTTCGTCTAATACTGATGTTGGATTTCCATCCTTTGCAAAATTTGTCCACATTTTGGTCATAATATTTATCACCTTCTCTGCTGAGGAATCCGGTTCGGGTAAATTCTTGAAAATGTTGGAATAAAATAAGTAACCCACATCATCGGCAT ] [+] EMBL BE844464 [ TTGAATAGAGAAATTGATAGAGATATTAAAGAGTTCATGGCATGGCATTTTTATACTTCTCTTTCCAATAATCGAATTTATCACTCATTAGATTTTTCTCTAGCTTTGGTTCTTCGTTGATGTTTAGATAATAATTATCACTTCCCATTGGCTCCCAATTCACTGTCACATCTTCGTCTAATACTGATGTTGGATTTCCATCCTTTGCAAAATTTGTCCACATTTTGGTCATAATATTTATCACCTTCTCTGCTGAGGAATCCGGTTCGGGTAAATTCTTGAAAATGTTGGAATAAAATAAGTAACCCACATCATCGGCATGTGCAACTCCATCGCTGACACCATGTAAACTTTTCATAAAACCAGTTGGCGCCTCATAAGAAGAACAGATATTGATAAATAGGAGACGAAATTCGATTCTTCATAATATCAAGCGATAATAGCTCTCCAGCATCGAAGAAAATATCGCTCAGCATCCTGATATATTCCGTTCAAATTATCTTTCGACACTTGCTTCTCCCCAAAATAGAATTTTTTCAAGCTTTGTCCACTTTCCTTCTTCGTATTCGAATCGGTGTAATTCAAATCGTCTGGTAAAAATTGCT ] [-] EMBL BI502757 [ TATTGATAAATAGGAGACGAAATTCGATTCTTCATAATATCAAGCGATAATAGCTCTCCAGCATCGAAGAAAATATCGCTCAGCATCCTGATATATT CGTTCAAATTATCTTTCGACACTTGCTTCTCCCCAAAATAGAATTTTTTCAAGCTTTGTCCACTTTCCTTCTTCGTATTCGAATCGGTGTAATTCAAATCGTCTGGTAAAAATTGCTCTGGTTCCGTGTTCAATACATCGATTTTATCTATCATATTTTGCGCCATAAATGCACATTCATCGGCTGTAATTCCAGACATCACGGGCACATCCGCGATTCTTCCAGATTTTAATAGAGTCCAAGGATCAGTCGGGAGGAATACGTCTTGTCCCATATCCACTTCAATCGATGGAACGAAAGCATTCGTATGCCCAGACAATACGTTCTGTTTCTTCATTATTTCGCTACTTGCTGCAATGATATCTTCAACGT GGAATTCGCTCAATTTTCTGACCAATTCCTCAGAATCTGTAGTTTTTATCCCCAAAGCTTCACCCAACATAAACGCTTGTTCCCTTG] [+] EMBL BE844369 [ ATTCTTCCAGATTTTAATAGAGTCCAAGGATCAGTCGGGAGGAATACGTCTTGTCCCATATCCACTTCAATCGATGGAACGAAAGCATTCGTATGCCCAGACAATACGTTCTGTTTCTTCATTATTTCGCTACTTGCTGCAGTGATATCTTCAACGTGGGAATTCGGTCAATTTTCTGACCAATTCCTCAGAATCTGTAGTTGTTATCCCCAAAGCTGCACCCAACATAAACGCTTGTTCCCTT ] consensusID : consensus_50#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 757 fasta sequence [CTGTTTTATGGATTTGCGGTTGCCTGGGTTTGTGCCGAGCAGGACGTACAATTGAAGATTCCTCAGGGTCTGTTGAAAGGTTTGAAGACCGAAACAGTTTTTCACAACAAGCCCTATTACAGTTTTAAGGGCATCCCCTACGCGAAACCGAATGTCGGTCCGGACAAATTTCAGATATCAGAACCAGCTGAACCATGGGAAGACCAAGTGTACGATGCGACCATGCATCGTTCTGCTTGCGCATTCTATTGCAAAGTGAAGAAGGGAATAATCGGTGAGGAGGATTGCCTCTATCTGAACGTTTATACTCCGGTTCTGGACAAAGAAGCGCGTAAAGCTGTTATGGTATGGATTTATCCCGGCGGTTGGAACGGTGGCTTGGGGGACGATATCTTGTTTGGTCCAGATTTCCTGGTGGAGAAAGACGTGGTGCTCGTTACGTTTAACTTCAGGAACGGGG-CGCTTGGATTTTTGAACACCGAGGATA-AAAGCGCTCCCGGAAATGCTGGTATGAAGGATCAAGTGTTGGCGTTGAAATGGGTGAAGGATAATATACATTACTTTGGCGGTTGCCCTAACA-GAGTAACTATTTTCGGTGATAG-TTCAGGTGGTGCTTCTGTTCAGTATCACATGTTATCTCCCATGTCTGAAGGTTTGTTCAATGCTGCTATACAGCAAAGTGGGACAATACTTAATCCATGGGCGATAACTTATAATCCAAGGGAACAAGCGTTTATGTTGGGTGAAGCTTTGGGGA] [+] EMBL BE844614 [CTGTTTTATGGATTTGCGGTTGCCTGGGTTTGTGCCGAGCAGGACGTACAATTGAAGATTCCTCAGGGTCTGTTGAAAGGTTTGAAGACCGAAACAGTTTTTCACAACAAGCCCTATTACAGTTTTAAGGGCATCCCCTACGCGAAACCGAATGTCGGTCCGGACAAATTTCAGATATCAGAACCAGCTGAACCATGGGAAGACCAAGTGTACGATGCGACCATGCATCGTTCTGCTTGCGCATTCTATTGCAAAGTGAAGAAGGGAATAATCGGTGAGGAGGATTGCCTCTATCTGAACGTTTATACTCCGGTTCTGGACAAAGAAGCGCGTAAAGCTGTTATGGTATGGATTTATCCCGGCGGTTGGAACGGTGGCTTGGGGGACGATATCTTGTTTGGTCCAGATTTCCTGG ] [+] EMBL BE844579 [ TTTATGGATTTGCGGTTGCCTGGGTTTGTGCCGAGCAGGACGTACAATTGAAGATTCCTCAGGGTCTGTTGAAAGGTTTGAAGACCGAAACAGTTTTTCACAACAAGCCCTATTACAGTTTTAAGGGTATCCCCTACGCGAAACCGAATGTCGGTCCGGACAAGTTTCAGATATCAGAACCAGCTGAACCATGGGAAGACCAAGTGTACGATGCGACCATGCATCGTTCTGCTTGCGCATTCTATTGCAAAGTGAAGAAGGGAATAATCGGTGAGGAGGATTGCCTCTATCTGAACGTTTATACTCCGGTTCTGGACAAAGAAGCGCGTAAAGCTGTTATGGTATGGATTTATCCCGGCGGTTGGAACGGTGGCTTGGGGGACGATATCTTGTTTGGTCCAGATTTCCTGGTGGAGAAAGACGTGGTGCTCGTTACGTTTAACTTCAGGAACGGGG CGCTTGGATTTTTGAACACCGAGGATA AAAGCGCTCCCGGAAATGCTGGTATGAAGGATCAAGTGTTGGCGTTGAAATGGGTGAAGGATAATATACATTACTTTGGCGGTTGCCCTAACAGGAGTAACTATTTTCGGTGATAGTTTCAGGTGGTGCTTCTGTTCAG ] [+] EMBL BE844388 [ TTTATGGATTTGCGGTTGCCTGGGTTTGTGCCGAGCAGGACGTACAATTGAAGATTCCTCAGGGTCTGTTGAAAGGTTTGAAGACCGAAACAGTTTTTCACAACAAGCCCTATTACAGTTTTAAGGGCATCCCCTACGCGAAACCGAATGTCGGTCCGGACAAATTTCAGATATCAGAACCAGCTGAACCATGGGAAGACCAAGTGTACGATGCAACCATGCATCGTTCTGCTTGCGCATTCTATTGCAAAGTGAAGAAGGGAATAATCGGTGAGGAGGATTGCCTCTATCTGAACGTTTATACTCCGGTTCTGGACAAAGAAGCGCGTAAAGCTGTTATGGTATGGATTTATCCCGGCGGTTGGAACGGTGGCTTGGGGGACGATATCTTGTTTGGTCCAGACTTCTTGGTGGAGAAAGACGTGGCGCTCGTTACGTTTAACTTCAGGAACGGGGCCGCTTGGATTTTTGAACACCGAGGATATAAAGCGCTCCCGGAAATGCTGGTATGAAGG ] [+] EMBL BE844525 [ CGGTTGCCTGGGTTTGTGCCGAGCAGGACGTACAATTGAAGATTCCTCAGGGTCTGTTGAAAGGTTTGAAGACCGAAACAGTTTTTCACAACAAGCCCTATTACAGTTTTAAGGGCATCCCCTACGCGAAACCGAATGTCGGTCCGGACAAATTTCAGATATCAGAACCAGCTGAACCATGGGAAGACCAAGTGTACGATGCGACCATGCATCGTTCTGCTTGCGCATTCTATTGCAAAGTGAAGAAGGGAATAATCGGTGAGGAGGATTGCCTCTATCTGAACGTTTATACTCCGGTTCTGGACAAAGAAGCGCGTAAAGCTGTTATGGTATGGATTTATCCCGGCGGTTGGAACGGTGGCTTGGGGGACGATATCTTGTTTGGTCCAGACTTCTTGGTGGAGAAAGACGTGGTGCTCGTTACGTTTAACTTCAGGAACGGGG CGCTTGGATTTTTGAACACCGAGGATA AAAGCGCTCCCGGAAATGCTGGTATGAAGGATCAAGTGTTGGCGTTGAAATGGGTGAAGGATAATATACATTACTTTGGCGGTTGCCCTAACA GAGTAACTATTTTCGGTGATAG TTCA ] [+] EMBL BI505859 [ GGGCATCCCCTACGCGAAACCGAATGTCGGTCCGGACAAATTTCAGATATCAGAACCAGCTGAACCATGGGAAGACCAAGTGTACGATGCGACCATGCATCGTTCTGCTTGCGCATTCTATTGCAAAGTGAAGAAGGGAATAATCGGTGAGGAGGATTGCCTCTATCTGAACGTTTATACTCCGGTTCTGGACAAAGAAGCGCGTAAAGCTGTTATGGTATGGATTTATCCCGGCGGTTGGAACGGTGGCTTGGGGGACGATATCTTGTTTGGTCCAGATTTCCTGGTGGAGAAAGACGTGGTGCTCGTTACGTTTAACTTCAGGAACGGGG CGCTTGGATTTTTGAACACCGAGGATA AAAGCGCTCCCGGAAATGCTGGTATGAAGGATCAAGTGTTGGCGTTGAAATGGGTGAAGGATAATATACATTACTTTGGCGGTTGCCCTAACA GAGTAACTATTTTCGGTGATAG TTCAGGTGGTGCTTCTGTTCAGTATCACATGTTATCTCCCATGTCTGAAGGTTTATTCAATGCTGCTA ] [+] EMBL BE844384 [ CAGGAACGGGG CGCTTGGATTTTTGAACACCGAGGATA AAAGCGCTCCCGGAAATGCTGGTATGAAGGATCAAGTGTTGGCATTGAAATGGGTGAAGGATAATATACATTACTTTGGCGGTTGCCCTAACA GAGTAACTATTTTCGGTGATAG TTCAGGTGGTGCTTCTGTTCAGTATCACATGTTATCTCCTATGTCTGAAGGTTTGTTCAATGCTGCTATACAGCAAAGTGGGACAATACTTAATCCATGGGCGATAACTTATAATCCAAGGGAACAAGCGTTTATGTTGGGTGAAGCTTTGGGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_50#0 AAAAAAAAATATTATGGAATATAAATCGTTCTTTCTTATATTGATAACTCTTATATTGAT 60 consensus_50#1 ------------------------------------------------------------ consensus_50#0 AAGATTGTATTATATGATATCATAATTAAATTACAGTTATTATTTTATTGCACGTAGATA 120 consensus_50#1 ------------------------------------------------------------ consensus_50#0 TCTATTTGAATAGAGAAATTGATAGAGATATTAAAGAGTTCATGGCATGGCATTTTTATA 180 consensus_50#1 ------------------------------------------------------------ consensus_50#0 CTTCTCTTTCCAATAATCGAATTTATCACTCATTAGATTTTTCTCTAGCTTTGGTTCTTC 240 consensus_50#1 -------------------------------------CTGTTTTATGGATTTGCGGTTGC 23 * ** * * * **** * * consensus_50#0 GTTGATGTTTAGATAATAATTATCACTTCCCATTGGCTCCCAATTCACTGTCACATCTTC 300 consensus_50#1 CTGGGTTTGTGCCGAGCAGGACGTACAATTGAA-GATTCCTCAGGGTCTGTTGAAAGGT- 81 * * * * * * * ** * * *** * **** * * consensus_50#0 GTCTAATACTGATGTTGGATTTCCATCCTTTGCAAAATTTGTCCACATTTTGGTCATAAT 360 consensus_50#1 -TTGAAGACCGAAACAG----------TTTTTCACAACAAGCCC-TATTACAGTTTTAAG 129 * ** ** ** * *** ** ** * ** *** ** *** consensus_50#0 ATTTATCACCTTCTCTGCTGAGGAATCCGGTTCGGGTAAATTCTTGAAAATGTTGGAATA 420 consensus_50#1 GGC-ATCCCCTACGCGAAACCGAATGTCGGTCCGGACAAATTTC---AGATATCAGAAC- 184 *** *** * * * * **** *** ***** * ** * *** consensus_50#0 AAATAAGTAACCCACATCATCGGCATGTGCAACTCCATCGCTGACACCATGTAAACTTTT 480 consensus_50#1 ---CAGCTGAACCATGGGAAGACCAAGTGTA-------CGATGCGACCATGCATCGTTCT 234 * * * *** * ** *** * ** ** ****** * ** * consensus_50#0 CATAAAACCAGTTGGCGCCTCATAAGAAGAACAGATATTGATAAATAGGAGACGAAATTC 540 consensus_50#1 GCT--------TGCGCATTCTATTGCAAAGTGAAGAAGGGAATAATCGGTGAGGAGGATT 286 * * ** ** ** * * ** *** ** ** ** * consensus_50#0 GATTCTTCATAATATCAAGCGATAATAGCTCTCCAGCATCGAAGAAAATATCGCTCAGCA 600 consensus_50#1 GCCTCTATCTGA------ACGTTTATA---CTCCGGTTCTGGACAAAGAAGCGCGTAAAG 337 * *** * * ** * *** **** * * * *** * *** * consensus_50#0 TCCTGATATATTCCGTTCAAATTATCTTTCGACACTTGCTTCTCCCCAAAATAGAATTTT 660 consensus_50#1 --CTGTTATG----GTATGGATT-TATCCCGGCGGTTGGAACGGTGGCTTGGGGGACGAT 390 *** *** ** *** * * ** * *** * * * * consensus_50#0 TTCAAGCTTTGTCCACTTTCCTTCTTCGTATTCGAATCGGTGTAATTCAAATCGTCTGGT 720 consensus_50#1 ATCTTGTTTGGTCCAGATTTCCTGGTGGAGAAAGACGTGGTGC--------TCGTTACGT 442 ** * ** ***** ** * * * * ** **** **** ** consensus_50#0 AAAAATTGCTCTGGTTCCGTGTTCAATACATCGATTTTATCTATCATATTTTGCGCCATA 780 consensus_50#1 ----------TTAACTTCAGG---AACGGGGCGCTTGGATTT-TTGAACACCGAGG-ATA 487 * * * * ** ** ** ** * * * * * *** consensus_50#0 AATGCACATTCATCGGCTGTAATTCCAGACATCACGGGCACATCCGCGATTCTTCCAGAT 840 consensus_50#1 AAAGCGCTCCC-------GGAAATGCTGGTATGAAGGAT-CAAGTGTTGGCGTTGAAATG 539 ** ** * * * ** * * * ** * ** ** * ** * consensus_50#0 TTTAATAGAGTCCAAGGATCAGTCGGGAGGAATACGTCTTGTCCCATATCCACTTCAATC 900 consensus_50#1 GGTGAAGGATAATATACATTACTTTGGCGG--TTGCCCTAACAGAGTAACTATTTTCGGT 597 * * ** * ** * * ** ** * ** ** * * ** consensus_50#0 GATGGAACGAAAGCATTCGTATGCCCAG-ACAATACGTTCTGTTTCTTCATTATTTCGCT 959 consensus_50#1 GATAGTTCAGGTG-GTGCTTCTGTTCAGTATCACATGTTATCTCCCATGTCTGAAGGTTT 656 *** * * * * * * ** *** * * * *** * * * * * * consensus_50#0 ACTTGCTGCAGTGATATCTTCAACGTGGAATTCGGTCAATTTTCTGACCAATTCCTCAGA 1019 consensus_50#1 GTTCAATGCTGCTATA-CAGCAAAGTGGGACAATACTTAATCCATGGGCGATAACTTATA 715 * *** * *** * *** **** * * * ** * ** ** * * consensus_50#0 ATCTGTAGTTGTTATCCCCAAAGCTGCACCCAACATAAACGCTTGTTCCCTTG 1072 consensus_50#1 ATCCAAGGGAACAAGCGTTTATGTTGGGTGAAGCTTTGGGGA----------- 757 *** * * * * * ** * * * * |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |