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Apis mellifera
cluster # 533 cluster # 533       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_533#0 length = 621 sequences # 3  
consensus_533#1 length = 529 sequences # 1  

consensusID : consensus_533#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 621
fasta sequence
                              [GGACGAGCAACAAACGATAAAGATGGATCTTCAGCGACGAGGTCAAGCGAAAGGGCGTGTTTATTGGCGTTGTTATTTCAATGCTGTGACGTGTTTCAAGAGAAAGTGATAATAAGCCAACGTAACCAGCCTTCGAAACCCGACTATTCGCATGCTTTCCCCGGTTGAAAGAGAAACAAATAAATCAGAAATTCAGAACAAAACTAGATCTTAAATCCAACGATGAATCTATCATTTATTTTGAATCGAGTTATTTTTCTCGCTTTCGAATCACTTCTCATCTATCTTCTTGATGACTATTTAAGTTCTTGCGTATCATTATTATGAAATATGNNNCGGTTGTATTAAACAGTGTTAACTATAATATATATCTGTCTGNNTTATAAAACGTTATATAAGATTAAATATTAAGATGAATCGAATTAGACGAAACGTTATCTATTTCGATTAAGTTTAAAATTCGAGCTTTTCCTTATTCAAGTGTACAATTTATGACAATTCCATGTGCTATTTCTTTTACGTCAAAATGAGAATTACTTTGTACAGAAGTACAAGTATGTGCAGATTATCAAAAGTACAATGTTTATATTCAACAAAATGGAAAAAGATCTTCTGGCTTTA]

[+] EMBL BI503345             [GGACGAGCAACAAACGATAAAGATGGATCTTCAGCGACGAGGTCAAGCGAAAGGGCGTGTTTATTGGCGTTGTTATTTCAATGCTGTGACGTGTTTCAAGAGAAAGTGATAATAAGCCAACGTAACCAGCCTTCGAAACCCGACTATTCGCATGCTTTCCCCGGTTGAAAGAGAAACAAATAAATCAGAAATTCAGAACAAAACTAGATCTTAAAACCAACGATGAATCTATCATTTATTTTGAATCGAGTTATTTTTCTCGCTTTCGAATCAaaaaaaaa                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BI508754             [                                                                                                                                                    CGCATGCTTTCCCCGGTTGAAAGAGAAACAAATAAATCAGAAATTCAGAACAAAACTAGATCTTAAATCCAACGATGAATCTATCATTTATTTTGAATCGAGTTATTTTTCTCGCTTTCGAATCACTTCTCATCTATCTTCTTGATGACTATTTAAGTTCTTGCGTATCATTATTATGAAATATGGTGCGGTTGTATTAAACAGTGTTAACTATAATATATATCTGTCTGGTTTATAAAACGTTATATAAGATTAAATATTAAGATGAATCGAATTAGACGAAACGTTATCTATTTCGATTAAGTTTAAAATTCGAGCTTTTCCTTATTCAAGTGTACAATTTATGACAATTCCATGTGCTATTTCTTTTACGTCAAAATGAGAATTACTTTGTACAGAAGTACAAGTATGTGCAGATTATCAAAAGTACAATGTTTATATTCAACAAAATGGAAAAAGATCTTCTGGCTTTA]
[+] EMBL BI516034             [                                                                                                                                                                                      AATCAGAAATTCAGAACAAAACTAGATCTTAAATCCAACGATGAATCTATCATTTATTTTGAATCGAGTTATTTTTCTCGCTTTCGAATCACTTCTCATCTATCTTCTTGATGACTATTTAAGTTCTTGCGTATCATTATTATGAAATATGNNNCGGTTGTATTAAACAGTGTTAACTATAATATATATCTGTCTGNNTTATAAAACGTTATATAAGATTAAATATTAAGATGAATCGAATTAGACGAAACGTTATCTATTTCGATTAAGTTTAAAATTCGAGCTTTTCCTTATTCAAGTGTACAATTTATGACAATTCCATGTGCTATTTCTTTTACGTCAAAATGAGAAT                                                                                       ]


>consensus_533#0 GGACGAGCAACAAACGATAAAGATGGATCTTCAGCGACGAGGTCAAGCGAAAGGGCGTGT TTATTGGCGTTGTTATTTCAATGCTGTGACGTGTTTCAAGAGAAAGTGATAATAAGCCAA CGTAACCAGCCTTCGAAACCCGACTATTCGCATGCTTTCCCCGGTTGAAAGAGAAACAAA TAAATCAGAAATTCAGAACAAAACTAGATCTTAAATCCAACGATGAATCTATCATTTATT TTGAATCGAGTTATTTTTCTCGCTTTCGAATCACTTCTCATCTATCTTCTTGATGACTAT TTAAGTTCTTGCGTATCATTATTATGAAATATGNNNCGGTTGTATTAAACAGTGTTAACT ATAATATATATCTGTCTGNNTTATAAAACGTTATATAAGATTAAATATTAAGATGAATCG AATTAGACGAAACGTTATCTATTTCGATTAAGTTTAAAATTCGAGCTTTTCCTTATTCAA GTGTACAATTTATGACAATTCCATGTGCTATTTCTTTTACGTCAAAATGAGAATTACTTT GTACAGAAGTACAAGTATGTGCAGATTATCAAAAGTACAATGTTTATATTCAACAAAATG GAAAAAGATCTTCTGGCTTTA



consensusID : consensus_533#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 529
fasta sequence
                              [TTTTTTAAACTCGCCAATTCCATAATATTTTGGTAATCCGTGTACTTCGATTTTATATTTTTCTGACGTAAAATCAGCTCTTTCAAGATACGCTACAAGTATGTGCAGATTATCAAAAGTACAATGTTTATATTCAACAAAATGGAAAAAGATCTTCTGGCTTTAATGGTTTTAAAATGCGTAAAGACATCAAATTTATAGGCAAACATGACGATTATTTAGAAATACTGTATGGAAAGCATATTTATCAGATTGAATTTAATCCTCCACCTCCAAAAATTTCTTTGATAGAGAAAAGAATCAGAGATTCAGAGACATATGATGAATATAAAGAAAATTCTTGCAAAATAGCTAAAATTGAAAATGATGAAACAGATAGTATTGGAACATGCGAAGAAATTTATGAGGAAAAAGAAGCAAAAAGAAAAGAAAAACAGATAAAAAATGCTCATGGTATTTTAAAATTCATAAATAGAAGCAAAATGTCTCCAGATACGTTTGAAGATACAGATGATGTAATAGACACTGA]

[+] EMBL BI506557             [TTTTTTAAACTCGCCAATTCCATAATATTTTGGTAATCCGTGTACTTCGATTTTATATTTTTCTGACGTAAAATCAGCTCTTTCAAGATACGCTACAAGTATGTGCAGATTATCAAAAGTACAATGTTTATATTCAACAAAATGGAAAAAGATCTTCTGGCTTTAATGGTTTTAAAATGCGTAAAGACATCAAATTTATAGGCAAACATGACGATTATTTAGAAATACTGTATGGAAAGCATATTTATCAGATTGAATTTAATCCTCCACCTCCAAAAATTTCTTTGATAGAGAAAAGAATCAGAGATTCAGAGACATATGATGAATATAAAGAAAATTCTTGCAAAATAGCTAAAATTGAAAATGATGAAACAGATAGTATTGGAACATGCGAAGAAATTTATGAGGAAAAAGAAGCAAAAAGAAAAGAAAAACAGATAAAAAATGCTCATGGTATTTTAAAATTCATAAATAGAAGCAAAATGTCTCCAGATACGTTTGAAGATACAGATGATGTAATAGACACTGA]


>consensus_533#1 TTTTTTAAACTCGCCAATTCCATAATATTTTGGTAATCCGTGTACTTCGATTTTATATTT TTCTGACGTAAAATCAGCTCTTTCAAGATACGCTACAAGTATGTGCAGATTATCAAAAGT ACAATGTTTATATTCAACAAAATGGAAAAAGATCTTCTGGCTTTAATGGTTTTAAAATGC GTAAAGACATCAAATTTATAGGCAAACATGACGATTATTTAGAAATACTGTATGGAAAGC ATATTTATCAGATTGAATTTAATCCTCCACCTCCAAAAATTTCTTTGATAGAGAAAAGAA TCAGAGATTCAGAGACATATGATGAATATAAAGAAAATTCTTGCAAAATAGCTAAAATTG AAAATGATGAAACAGATAGTATTGGAACATGCGAAGAAATTTATGAGGAAAAAGAAGCAA AAAGAAAAGAAAAACAGATAAAAAATGCTCATGGTATTTTAAAATTCATAAATAGAAGCA AAATGTCTCCAGATACGTTTGAAGATACAGATGATGTAATAGACACTGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_533#0      GGACGAGCAACAAACGATAAAGATGGATCTTCAGCGACGAGGTCAAGCGAAAGGGCGTGT 60
consensus_533#1      -----------------TTTTTTAAACTCGCCAATTCCATAATATTTTGGTAATCCGTGT 43
                                      *         **  **    *    *     *  *   *****

consensus_533#0      TTATTGGCGTTGTTATTTCAATGCTGTGACGT--GTTTCAAGAGAAAGTGATAATAAGCC 118
consensus_533#1      ACTTCGATTTTAT-ATTTTTCTGACGTAAAATCAGCTCTTTCAAGATACGCTA-CAAGTA 101
                        * *   ** * ****   **  ** *  *  * *     *  *   * **  ***  

consensus_533#0      AACGTAACCAGCCTTCGAAACCCGACTATTCGCATGCTTTCCCCGGTTGAAAGAGAAACA 178
consensus_533#1      TGTGCAG---ATTATCAAAAGTACAATGTTTATA---TTCAACAAAATGGAAAAAGATCT 155
                        * *        ** ***    * * **   *   **   *    ** ** *  * * 

consensus_533#0      AATAAATCAGAAA--TTCAGAACAAAACTAGATCTTAAATCCAACGATGAATCTATCATT 236
consensus_533#1      TCTGGCTTTAATGGTTTTAAAATGCGTAAAGACATCAAATTTATAGGCAAACATGACGAT 215
                       *   *   *    ** * **       ***  * ****  *  *   **  *  *  *

consensus_533#0      TATTTTGAATCGAGTTATTTTTCTCGCTTTCGAATCACTTCTCATCTATCTTCTTGATGA 296
consensus_533#1      TATTTAGAAATA--CTGTATGGAAAGCATATTTATCAGATTGAATTTAA-TCCTCCACCT 272
                     ***** ***      * * *     ** *    ****  *   ** **  * **  *   

consensus_533#0      CTATTTAAGTTCTTGCGTATCATTATTATGAAATATGNNNCGGTTGTATTAAACAGTGTT 356
consensus_533#1      CCAAA-AATTTCTT--------TGATAGAGAAAAGAATCAGAGATTCAGAGACATATGAT 323
                     * *   ** *****        * **   ****         * *  *   *    ** *

consensus_533#0      AACTATAATATATATCTGTCTGNNTTATAAAACGTTATATAAGATTAAATATTAAGATGA 416
consensus_533#1      GAATATAAAGAAAATTCTTGCAAAATAGCTAAAATTGAAAATGATGAAACAGATAGT--- 380
                      * *****   * **   *      **   **  **  * * *** *** *   **    

consensus_533#0      ATCGAATTAGACGAAACGTTATCTATTTCGATTAAGTTTAAAATTCGAGCTTTTCCTTAT 476
consensus_533#1      ATTGGAACATGCGAA--GAAATTTATGAGGAAAAAGAAGCAAA---AAG----------- 424
                     ** * *  *  ****  *  ** ***   **  ***    ***    **           

consensus_533#0      TCAAGTGTACAATTTATGACAATTCCATGTGCTATTTCTTTTACGTCAAAATGAGAATTA 536
consensus_533#1      --AAAAGAAAAACAGATAAAAAATGCTCATGGTATTTTAAAATTCATAAATAGAAGCAAA 482
                       **  * * **   ** * ** * *   ** *****          ***  **     *

consensus_533#0      CTTTGTACAGAAGTACAAGTATGTGCAGATTATCAAAAGTACAATGTTTATATTCAACAA 596
consensus_533#1      ATGTCTCCAGATACGTTTGAAGATACAGATGATGTAATAGACACTGA------------- 529
                      * * * ****       * *  * ***** **  **   *** **              

consensus_533#0      AATGGAAAAAGATCTTCTGGCTTTA 621
consensus_533#1      -------------------------
                                              




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)