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Apis mellifera
cluster # 538 cluster # 538       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_538#0 length = 893 sequences # 3  
consensus_538#1 length = 294 sequences # 1  

consensusID : consensus_538#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 893
fasta sequence
                              [ATCGATCATCGCACAAGAGCGCACATTGTGAAAAAAATAAGCGAGTGGAAGCGTGTAATAAGGACATGGTTCAACGCGAACAGAGGACGCGAAATTAGTGGTAAAGTTTAAGGCAGCTTTTAGTTTCGAAAGGTAGAGGGGGGGAGAAGACGATTTTTAAAAAACAGAGAGAGAGAAAGAGAGAGAGAGGTGCTTATTAGATCTCGAGATGATCTCTTAATAATCGAAGATACATTCCATCCGAGTACGAGGGCTCTGGCGCGGGATAGAAAAAAAAAAAAGACTTCCTTTTCTCGTCTACGACATTCCAAGCTTATCTTATCTTTTTTTTTTCTACTTTTCACTATTTCCTCGCTACTTTTCTCTTTCCTTTTTTTCTTTTTTTTCCCTCTCTCTTTTCATTTCTCTTTAATATAATTTTAACGTTAATAGTTTCAAAGTCGAGACTGAACGTTCGATTTATTCGGTGAATGATTTTTAGAGAAGAAGAAGAAGAAGACAGAAGGTCGGTCGGTGATTTATCGATCACGTAGNCGAGGATCGTCGAATTTTTGACGGCAAAGACCCTCGANGTACAAAATTCGCGATTTAATAATCGTAACGTAATTAATTATATTTAGACGCGGTTTCTAAAACGATCGATCTCGAACAGACGCGTTCCCGTAAGTTAAAAAACCGCCAAAAAAAGACATTTATCCTTTTTCTATCGAAAGGACAGGGATTTCTATAGGGAATTGAATGAAAGTTTATTCATCGACAGTATTAAAATAAGGGGAATTTTTCGCGGAGAGACGAAATATTCAAATGAGCAACGCACTTGTAGAGTTATTTTTTCAAAAACTTGACACNNATTAATAGTTGATAAAACCTTAAAATTACTTCTTCTTTGAGAT]

[+] EMBL BI503272             [ATCGATCATCGCACAAGAGCGCACATTGTGAAAAAAATAAGCGAGTGGAAGCGTGTAATAAGGACATGGTTCAACGCGAACAGAGGACGCGAAATTAGTGGTAAAGTTTAAGGCAGCTTTTAGTTTCGAAAGGTAGAGGGGGGGAGAAGACGATTTTTAAAAAACAGAGAGAGAGAAAGAGAGAGAGAGGTGCTTATTAGATCTCGAGATGATCTCTTAATAATCGAAGATACATTCCATCCGAGTACGAGGGCTCTGGCGCGGGATAGAAAAAAAAAAAAGACTTCCTTTTCTCGTCTACGACATTCCAAGCTTATCTTATCTTTTTTTTTTCTACTTTTCACTATTTCCTCGCTACTTTTCTCTTTCCTTTTTTTCTTTTTTTTCCCTCTCTCTTTTCATTTCTCTTTAATATAATTTTAACGTTAATAGTTTCAAAGTCGAGACTGAACGTTCGATTTATTCGGTGAATGATTTTTAGAGAAGAA                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BI507025             [                                         CGAGTGGAAGCGTGTAATAAGGACATGGTTCAACGCGAACAGAGGACGCGAAATTAGTGGTAAAGTTTAAGGCAGCTTTTAGTTTCGAAAGGTAGAGGGGGGGAGAAGACGATTTTTAAAAAACAGAGAGAGAGAAAGAGAGAGAGAGGTGCTTATTAGATCTCGAGATGATCTCTTAATAATCGAAGATACATTCCATCCGAGTACGAGGGCTCTGGCGCGGGATAGAAAAAAAAAAAAGACTTCCTTTTCTCGTCTACGACATTCCAAGCTTATCTTATCTTTTTTTTTTCTACTTTTCACTATTTCCTCGCTACTTTTCTCTTTCCTTTTTTTCTTTTTTTTCCCTCTCTCTTTTCATTTCTCTTTAATATAATTTTAACGTTAATAGTTTCAAAGTCGAGACTGAACGTTCGATTTATTCGGTGAATGATTTTTAGAGAAGAAGAAGAAGAAGACAGAAGGTCGGTCGGTGATTTATCGATCACGTAGNCGAGGATCGTCGAATTTTTGACGGCAAAGACCCTCGANGTACAAAATTCGCGATTTAATAATCGTAACG                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BI515868             [                                                                                                                                                                                                                                                                                                                                                                                                        CTCTTTTCATTTCTCTTTAATATAATTTTAACGTTAATAGTTTCAAAGTCGAGACTGAACGTTCGATTTATTCGGTGAATGATTTTTAGAGAAGAAGAAGAAGAAGACAGAAGGTCGGTCGGTGATTTATCGATCACGTAGACGAGGATCGTCGAATTTTTGACGGCAAAGACCCTCGAGGTACAAAATTCGCGATTTAATAATCGTAACGTAATTAATTATATTTAGACGCGGTTTCTAAAACGATCGATCTCGAACAGACGCGTTCCCGTAAGTTAAAAAACCGCCAAAAAAAGACATTTATCCTTTTTCTATCGAAAGGACAGGGATTTCTATAGGGAATTGAATGAAAGTTTATTCATCGACAGTATTAAAATAAGGGGAATTTTTCGCGGAGAGACGAAATATTCAAATGAGCAACGCACTTGTAGAGTTATTTTTTCAAAAACTTGACACNNATTAATAGTTGATAAAACCTTAAAATTACTTCTTCTTTGAGAT]


>consensus_538#0 ATCGATCATCGCACAAGAGCGCACATTGTGAAAAAAATAAGCGAGTGGAAGCGTGTAATA AGGACATGGTTCAACGCGAACAGAGGACGCGAAATTAGTGGTAAAGTTTAAGGCAGCTTT TAGTTTCGAAAGGTAGAGGGGGGGAGAAGACGATTTTTAAAAAACAGAGAGAGAGAAAGA GAGAGAGAGGTGCTTATTAGATCTCGAGATGATCTCTTAATAATCGAAGATACATTCCAT CCGAGTACGAGGGCTCTGGCGCGGGATAGAAAAAAAAAAAAGACTTCCTTTTCTCGTCTA CGACATTCCAAGCTTATCTTATCTTTTTTTTTTCTACTTTTCACTATTTCCTCGCTACTT TTCTCTTTCCTTTTTTTCTTTTTTTTCCCTCTCTCTTTTCATTTCTCTTTAATATAATTT TAACGTTAATAGTTTCAAAGTCGAGACTGAACGTTCGATTTATTCGGTGAATGATTTTTA GAGAAGAAGAAGAAGAAGACAGAAGGTCGGTCGGTGATTTATCGATCACGTAGNCGAGGA TCGTCGAATTTTTGACGGCAAAGACCCTCGANGTACAAAATTCGCGATTTAATAATCGTA ACGTAATTAATTATATTTAGACGCGGTTTCTAAAACGATCGATCTCGAACAGACGCGTTC CCGTAAGTTAAAAAACCGCCAAAAAAAGACATTTATCCTTTTTCTATCGAAAGGACAGGG ATTTCTATAGGGAATTGAATGAAAGTTTATTCATCGACAGTATTAAAATAAGGGGAATTT TTCGCGGAGAGACGAAATATTCAAATGAGCAACGCACTTGTAGAGTTATTTTTTCAAAAA CTTGACACNNATTAATAGTTGATAAAACCTTAAAATTACTTCTTCTTTGAGAT



consensusID : consensus_538#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 294
fasta sequence
                              [GAGGGAATCGATCATCGCACAAGAGCGCACATTGTGAAAAAAATAAGCGAGTGGAAGCGTGTAATAAGGACATGGTTCAACGCGAACAGAGGACGCGAAATTAGTGGTAAAGTTTAAGGCAGCTTTTAGTTTCGAAAGGTAGAGGGGGGGAGAAGACGATTTTTAAAAAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTGCTTATTAGATCTCGAGATGATCTCTTAATAATCGAAGATACATTCCATCCGAGTACGAGGGCTCTGGCGCGGGATAGAAAAAAA]

[+] EMBL BI509105             [GAGGGAATCGATCATCGCACAAGAGCGCACATTGTGAAAAAAATAAGCGAGTGGAAGCGTGTAATAAGGACATGGTTCAACGCGAACAGAGGACGCGAAATTAGTGGTAAAGTTTAAGGCAGCTTTTAGTTTCGAAAGGTAGAGGGGGGGAGAAGACGATTTTTAAAAAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTGCTTATTAGATCTCGAGATGATCTCTTAATAATCGAAGATACATTCCATCCGAGTACGAGGGCTCTGGCGCGGGATAGAAAAAAA]


>consensus_538#1 GAGGGAATCGATCATCGCACAAGAGCGCACATTGTGAAAAAAATAAGCGAGTGGAAGCGT GTAATAAGGACATGGTTCAACGCGAACAGAGGACGCGAAATTAGTGGTAAAGTTTAAGGC AGCTTTTAGTTTCGAAAGGTAGAGGGGGGGAGAAGACGATTTTTAAAAAACAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGAGAGGTGCTTATTAGATCTCGAGATGATCTCTTAATA ATCGAAGATACATTCCATCCGAGTACGAGGGCTCTGGCGCGGGATAGAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_538#0      ------ATCGATCATCGCACAAGAGCGCACATTGTGAAAAAAATAAGCGAGTGGAAGCGT 54
consensus_538#1      GAGGGAATCGATCATCGCACAAGAGCGCACATTGTGAAAAAAATAAGCGAGTGGAAGCGT 60
                           ******************************************************

consensus_538#0      GTAATAAGGACATGGTTCAACGCGAACAGAGGACGCGAAATTAGTGGTAAAGTTTAAGGC 114
consensus_538#1      GTAATAAGGACATGGTTCAACGCGAACAGAGGACGCGAAATTAGTGGTAAAGTTTAAGGC 120
                     ************************************************************

consensus_538#0      AGCTTTTAGTTTCGAAAGGTAGAGGGGGGGAGAAGACGATTTTTAAAAAACAGAGAGAGA 174
consensus_538#1      AGCTTTTAGTTTCGAAAGGTAGAGGGGGGGAGAAGACGATTTTTAAAAAACAGAGAGAGA 180
                     ************************************************************

consensus_538#0      GAAAGAGAGAGAGAG------------GTGCTTATTAGATCTCGAGATGATCTCTTAATA 222
consensus_538#1      GAGAGAGAGAGAGAGAGAGAGAGAGAGGTGCTTATTAGATCTCGAGATGATCTCTTAATA 240
                     ** ************            *********************************

consensus_538#0      ATCGAAGATACATTCCATCCGAGTACGAGGGCTCTGGCGCGGGATAGAAAAAAAAAAAAG 282
consensus_538#1      ATCGAAGATACATTCCATCCGAGTACGAGGGCTCTGGCGCGGGATAGAAAAAAA------ 294
                     ******************************************************      

consensus_538#0      ACTTCCTTTTCTCGTCTACGACATTCCAAGCTTATCTTATCTTTTTTTTTTCTACTTTTC 342
consensus_538#1      ------------------------------------------------------------
                                                                                 

consensus_538#0      ACTATTTCCTCGCTACTTTTCTCTTTCCTTTTTTTCTTTTTTTTCCCTCTCTCTTTTCAT 402
consensus_538#1      ------------------------------------------------------------
                                                                                 

consensus_538#0      TTCTCTTTAATATAATTTTAACGTTAATAGTTTCAAAGTCGAGACTGAACGTTCGATTTA 462
consensus_538#1      ------------------------------------------------------------
                                                                                 

consensus_538#0      TTCGGTGAATGATTTTTAGAGAAGAAGAAGAAGAAGACAGAAGGTCGGTCGGTGATTTAT 522
consensus_538#1      ------------------------------------------------------------
                                                                                 

consensus_538#0      CGATCACGTAGNCGAGGATCGTCGAATTTTTGACGGCAAAGACCCTCGANGTACAAAATT 582
consensus_538#1      ------------------------------------------------------------
                                                                                 

consensus_538#0      CGCGATTTAATAATCGTAACGTAATTAATTATATTTAGACGCGGTTTCTAAAACGATCGA 642
consensus_538#1      ------------------------------------------------------------
                                                                                 

consensus_538#0      TCTCGAACAGACGCGTTCCCGTAAGTTAAAAAACCGCCAAAAAAAGACATTTATCCTTTT 702
consensus_538#1      ------------------------------------------------------------
                                                                                 

consensus_538#0      TCTATCGAAAGGACAGGGATTTCTATAGGGAATTGAATGAAAGTTTATTCATCGACAGTA 762
consensus_538#1      ------------------------------------------------------------
                                                                                 

consensus_538#0      TTAAAATAAGGGGAATTTTTCGCGGAGAGACGAAATATTCAAATGAGCAACGCACTTGTA 822
consensus_538#1      ------------------------------------------------------------
                                                                                 

consensus_538#0      GAGTTATTTTTTCAAAAACTTGACACNNATTAATAGTTGATAAAACCTTAAAATTACTTC 882
consensus_538#1      ------------------------------------------------------------
                                                                                 

consensus_538#0      TTCTTTGAGAT 893
consensus_538#1      -----------
                                




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)