These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_538#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 893 fasta sequence [ATCGATCATCGCACAAGAGCGCACATTGTGAAAAAAATAAGCGAGTGGAAGCGTGTAATAAGGACATGGTTCAACGCGAACAGAGGACGCGAAATTAGTGGTAAAGTTTAAGGCAGCTTTTAGTTTCGAAAGGTAGAGGGGGGGAGAAGACGATTTTTAAAAAACAGAGAGAGAGAAAGAGAGAGAGAGGTGCTTATTAGATCTCGAGATGATCTCTTAATAATCGAAGATACATTCCATCCGAGTACGAGGGCTCTGGCGCGGGATAGAAAAAAAAAAAAGACTTCCTTTTCTCGTCTACGACATTCCAAGCTTATCTTATCTTTTTTTTTTCTACTTTTCACTATTTCCTCGCTACTTTTCTCTTTCCTTTTTTTCTTTTTTTTCCCTCTCTCTTTTCATTTCTCTTTAATATAATTTTAACGTTAATAGTTTCAAAGTCGAGACTGAACGTTCGATTTATTCGGTGAATGATTTTTAGAGAAGAAGAAGAAGAAGACAGAAGGTCGGTCGGTGATTTATCGATCACGTAGNCGAGGATCGTCGAATTTTTGACGGCAAAGACCCTCGANGTACAAAATTCGCGATTTAATAATCGTAACGTAATTAATTATATTTAGACGCGGTTTCTAAAACGATCGATCTCGAACAGACGCGTTCCCGTAAGTTAAAAAACCGCCAAAAAAAGACATTTATCCTTTTTCTATCGAAAGGACAGGGATTTCTATAGGGAATTGAATGAAAGTTTATTCATCGACAGTATTAAAATAAGGGGAATTTTTCGCGGAGAGACGAAATATTCAAATGAGCAACGCACTTGTAGAGTTATTTTTTCAAAAACTTGACACNNATTAATAGTTGATAAAACCTTAAAATTACTTCTTCTTTGAGAT] [+] EMBL BI503272 [ATCGATCATCGCACAAGAGCGCACATTGTGAAAAAAATAAGCGAGTGGAAGCGTGTAATAAGGACATGGTTCAACGCGAACAGAGGACGCGAAATTAGTGGTAAAGTTTAAGGCAGCTTTTAGTTTCGAAAGGTAGAGGGGGGGAGAAGACGATTTTTAAAAAACAGAGAGAGAGAAAGAGAGAGAGAGGTGCTTATTAGATCTCGAGATGATCTCTTAATAATCGAAGATACATTCCATCCGAGTACGAGGGCTCTGGCGCGGGATAGAAAAAAAAAAAAGACTTCCTTTTCTCGTCTACGACATTCCAAGCTTATCTTATCTTTTTTTTTTCTACTTTTCACTATTTCCTCGCTACTTTTCTCTTTCCTTTTTTTCTTTTTTTTCCCTCTCTCTTTTCATTTCTCTTTAATATAATTTTAACGTTAATAGTTTCAAAGTCGAGACTGAACGTTCGATTTATTCGGTGAATGATTTTTAGAGAAGAA ] [+] EMBL BI507025 [ CGAGTGGAAGCGTGTAATAAGGACATGGTTCAACGCGAACAGAGGACGCGAAATTAGTGGTAAAGTTTAAGGCAGCTTTTAGTTTCGAAAGGTAGAGGGGGGGAGAAGACGATTTTTAAAAAACAGAGAGAGAGAAAGAGAGAGAGAGGTGCTTATTAGATCTCGAGATGATCTCTTAATAATCGAAGATACATTCCATCCGAGTACGAGGGCTCTGGCGCGGGATAGAAAAAAAAAAAAGACTTCCTTTTCTCGTCTACGACATTCCAAGCTTATCTTATCTTTTTTTTTTCTACTTTTCACTATTTCCTCGCTACTTTTCTCTTTCCTTTTTTTCTTTTTTTTCCCTCTCTCTTTTCATTTCTCTTTAATATAATTTTAACGTTAATAGTTTCAAAGTCGAGACTGAACGTTCGATTTATTCGGTGAATGATTTTTAGAGAAGAAGAAGAAGAAGACAGAAGGTCGGTCGGTGATTTATCGATCACGTAGNCGAGGATCGTCGAATTTTTGACGGCAAAGACCCTCGANGTACAAAATTCGCGATTTAATAATCGTAACG ] [+] EMBL BI515868 [ CTCTTTTCATTTCTCTTTAATATAATTTTAACGTTAATAGTTTCAAAGTCGAGACTGAACGTTCGATTTATTCGGTGAATGATTTTTAGAGAAGAAGAAGAAGAAGACAGAAGGTCGGTCGGTGATTTATCGATCACGTAGACGAGGATCGTCGAATTTTTGACGGCAAAGACCCTCGAGGTACAAAATTCGCGATTTAATAATCGTAACGTAATTAATTATATTTAGACGCGGTTTCTAAAACGATCGATCTCGAACAGACGCGTTCCCGTAAGTTAAAAAACCGCCAAAAAAAGACATTTATCCTTTTTCTATCGAAAGGACAGGGATTTCTATAGGGAATTGAATGAAAGTTTATTCATCGACAGTATTAAAATAAGGGGAATTTTTCGCGGAGAGACGAAATATTCAAATGAGCAACGCACTTGTAGAGTTATTTTTTCAAAAACTTGACACNNATTAATAGTTGATAAAACCTTAAAATTACTTCTTCTTTGAGAT] consensusID : consensus_538#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 294 fasta sequence [GAGGGAATCGATCATCGCACAAGAGCGCACATTGTGAAAAAAATAAGCGAGTGGAAGCGTGTAATAAGGACATGGTTCAACGCGAACAGAGGACGCGAAATTAGTGGTAAAGTTTAAGGCAGCTTTTAGTTTCGAAAGGTAGAGGGGGGGAGAAGACGATTTTTAAAAAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTGCTTATTAGATCTCGAGATGATCTCTTAATAATCGAAGATACATTCCATCCGAGTACGAGGGCTCTGGCGCGGGATAGAAAAAAA] [+] EMBL BI509105 [GAGGGAATCGATCATCGCACAAGAGCGCACATTGTGAAAAAAATAAGCGAGTGGAAGCGTGTAATAAGGACATGGTTCAACGCGAACAGAGGACGCGAAATTAGTGGTAAAGTTTAAGGCAGCTTTTAGTTTCGAAAGGTAGAGGGGGGGAGAAGACGATTTTTAAAAAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTGCTTATTAGATCTCGAGATGATCTCTTAATAATCGAAGATACATTCCATCCGAGTACGAGGGCTCTGGCGCGGGATAGAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_538#0 ------ATCGATCATCGCACAAGAGCGCACATTGTGAAAAAAATAAGCGAGTGGAAGCGT 54 consensus_538#1 GAGGGAATCGATCATCGCACAAGAGCGCACATTGTGAAAAAAATAAGCGAGTGGAAGCGT 60 ****************************************************** consensus_538#0 GTAATAAGGACATGGTTCAACGCGAACAGAGGACGCGAAATTAGTGGTAAAGTTTAAGGC 114 consensus_538#1 GTAATAAGGACATGGTTCAACGCGAACAGAGGACGCGAAATTAGTGGTAAAGTTTAAGGC 120 ************************************************************ consensus_538#0 AGCTTTTAGTTTCGAAAGGTAGAGGGGGGGAGAAGACGATTTTTAAAAAACAGAGAGAGA 174 consensus_538#1 AGCTTTTAGTTTCGAAAGGTAGAGGGGGGGAGAAGACGATTTTTAAAAAACAGAGAGAGA 180 ************************************************************ consensus_538#0 GAAAGAGAGAGAGAG------------GTGCTTATTAGATCTCGAGATGATCTCTTAATA 222 consensus_538#1 GAGAGAGAGAGAGAGAGAGAGAGAGAGGTGCTTATTAGATCTCGAGATGATCTCTTAATA 240 ** ************ ********************************* consensus_538#0 ATCGAAGATACATTCCATCCGAGTACGAGGGCTCTGGCGCGGGATAGAAAAAAAAAAAAG 282 consensus_538#1 ATCGAAGATACATTCCATCCGAGTACGAGGGCTCTGGCGCGGGATAGAAAAAAA------ 294 ****************************************************** consensus_538#0 ACTTCCTTTTCTCGTCTACGACATTCCAAGCTTATCTTATCTTTTTTTTTTCTACTTTTC 342 consensus_538#1 ------------------------------------------------------------ consensus_538#0 ACTATTTCCTCGCTACTTTTCTCTTTCCTTTTTTTCTTTTTTTTCCCTCTCTCTTTTCAT 402 consensus_538#1 ------------------------------------------------------------ consensus_538#0 TTCTCTTTAATATAATTTTAACGTTAATAGTTTCAAAGTCGAGACTGAACGTTCGATTTA 462 consensus_538#1 ------------------------------------------------------------ consensus_538#0 TTCGGTGAATGATTTTTAGAGAAGAAGAAGAAGAAGACAGAAGGTCGGTCGGTGATTTAT 522 consensus_538#1 ------------------------------------------------------------ consensus_538#0 CGATCACGTAGNCGAGGATCGTCGAATTTTTGACGGCAAAGACCCTCGANGTACAAAATT 582 consensus_538#1 ------------------------------------------------------------ consensus_538#0 CGCGATTTAATAATCGTAACGTAATTAATTATATTTAGACGCGGTTTCTAAAACGATCGA 642 consensus_538#1 ------------------------------------------------------------ consensus_538#0 TCTCGAACAGACGCGTTCCCGTAAGTTAAAAAACCGCCAAAAAAAGACATTTATCCTTTT 702 consensus_538#1 ------------------------------------------------------------ consensus_538#0 TCTATCGAAAGGACAGGGATTTCTATAGGGAATTGAATGAAAGTTTATTCATCGACAGTA 762 consensus_538#1 ------------------------------------------------------------ consensus_538#0 TTAAAATAAGGGGAATTTTTCGCGGAGAGACGAAATATTCAAATGAGCAACGCACTTGTA 822 consensus_538#1 ------------------------------------------------------------ consensus_538#0 GAGTTATTTTTTCAAAAACTTGACACNNATTAATAGTTGATAAAACCTTAAAATTACTTC 882 consensus_538#1 ------------------------------------------------------------ consensus_538#0 TTCTTTGAGAT 893 consensus_538#1 ----------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |