These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_581#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 638 fasta sequence [AATAAGGGTGTCGGATAGAGATAGAGAGAAGATTTCAAAACCCGATTTATATAGAAAAACATGCGAAAAAAAAAAAACCAACCAAGAGGGATTTAAATGCGCGTAGATGATTTCAAGGGAAAAGCCACAAGTTATTGAATAGCGTAGTCCACCATTTGTCCGTGTAGTTTATCTGCTCGCCTATCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTTTGTCTGTCTGTCTGTCTGTCTATCTGTCTGTCCGCCTATTTGACTGACTGGCTGACTTAATCTGTCTGTCTTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTTTCCGTCTGTTCACCAAATCTGTTTGAAAAATTTGGCAGCCAGCCAGACAGTCGGTCGGTCGGTCGATCAGTCGNTCAAACAGTTAGCCAGTCAGTCGGTCAATCAGTTAGTCAGTCTGCCTGTCTGTCATTCTGTC-ATATATATATATATATATATATATATATAGAGACTATCTATATCTCCGTCTAAAATCTNNNNCTCTTTTTTTTTTCTTTCTTTTTATATTATTATTATTATTATATTAACGAATATTGAAAGTAAGATATAAAGATGTAAAGAAATAGTTGA] [+] EMBL BI515524 [AATAAGGGTGTCGGATAGAGATAGAGAGAAGATTTCAAAACCCGATTTATATAGAAAAACATGCGAAAAAAAAAAAACCAACCAAGAGGGATTTAAATGCGCGTAGATGATTTCAAGGGAAAAGCCACAAGTTATTGAATAGCGTAGTCCACCATTTGTCCGTGTAGTTTATCTGCTCGCCTATCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTTTGTCTGTCTGTCTGTCTGTCTATCTGTCTGTCCGCCTATTTGACTGACTGGCTGACTTAATCTGTCTGTCTTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTTTCCGTCTGTTCACCAAATCTGTTTGAAAAATTTGGCAGCCAGCCAGACAGTCGGTCGGTCGGTCGATCAGTCGATCAAACAGTTAGCCAGTCAGTCGGTCAATCAGTTAGTCAGTCTGCCTGTCTGTCATTCTGTCTATATATATATATATATATATATATATATAGAGACTATCTATATCTCCGTCTAAAATCTNNNNCTCTTTTTTTTTTCTTTCTTTTTATATTATTATTATTATTATATTAACGAATATTGAAAGTAAGATATAAAGATGTAAAGAAATAGTTGA] [+] EMBL BI512079 [ ATCTGCTCGCCTATCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTTTGTCTGTCTGTCTGTCTGTCTATCTGTCTGTCCGCCTATTTGACTGACTGGCTGACTTAATCTGTCTGTCTTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTTTCCGTCTGTTCACCAAATCTGTTTGAAAAATTTGGCAGCCAGCCAGACAGTCGGTCGGTCGGTCGATCAGTCGNTCAAACAGTTAGCCAGTCAGTCGGTCAATCAGTTAGTCAGTCTGCCTGTCTGTCATTCTGTC TATATATATATATATATATATATATATAGAGACTATCTATATCTCCGTCTAAAATCTGTTTCTCTTTTTTTTTTCTTTCTTTTTATATTATTATTATTATTATATTAACGAATATTGAAAGTAAGATATAAAGATGTAAAGAA ] consensusID : consensus_581#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 560 fasta sequence [AAAAAACCAACCAAGAGGGATTTAAATGCGCGTAGATGATTTCAAGGGAAAAGCCACAAGTTATTGAATAGCGTAGTCCACCATTTGTCCGTGTAGTTTATCTGCTCGCCTATCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTTTGTCTGTCTGTCTGTCTGTCTGTCTATCTGTCTGTCCGCCTATTTGACTGACTGGCTGACTTAATCTGTCTGTCTTGTCTGTCTGTCTGTCTGTCTGTCTGTCTTTCCGTCTGTTCACCAAATCTGTTTGAAAAATTTGGCAGCCAGCCAGACAGTCGGTCGGTCGGTCGATCAGTCGATCAAACAGTTAGCCAGTCAGTCGGTCAATCAGTTAGTCAGTCTGCCTGTCTGTCATTCTGTCTATATATATATATATATATATATATATATATATATAGAGACTATCTATATCTCCGTCTAAAATCTGTTTCTCTTTTTTTTTCTTTCTTTTTATATTATTATTATTATTATATTAACGAATATTGAAAGTAAGATATAAAGATGTAAAGAAATAGTTGAAAAAAAA] [+] EMBL BI514423 [AAAAAACCAACCAAGAGGGATTTAAATGCGCGTAGATGATTTCAAGGGAAAAGCCACAAGTTATTGAATAGCGTAGTCCACCATTTGTCCGTGTAGTTTATCTGCTCGCCTATCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTTTGTCTGTCTGTCTGTCTGTCTGTCTATCTGTCTGTCCGCCTATTTGACTGACTGGCTGACTTAATCTGTCTGTCTTGTCTGTCTGTCTGTCTGTCTGTCTGTCTTTCCGTCTGTTCACCAAATCTGTTTGAAAAATTTGGCAGCCAGCCAGACAGTCGGTCGGTCGGTCGATCAGTCGATCAAACAGTTAGCCAGTCAGTCGGTCAATCAGTTAGTCAGTCTGCCTGTCTGTCATTCTGTCTATATATATATATATATATATATATATATATATATAG ] [+] EMBL BI502937 [ TCTGTCTATCTGTCTGTCCGCCTATTTGACTGACTGGCTGACTTAATCTGTCTGTCTTGTCTGTCTGTCTGTCTGTCTGTCTGTCTTTCCGTCTGTTCACCAAATCTGTTTGAAAAATTTGGCAGCCAGCCAGACAGTCGGTCGGTCGGTCGATCAGTCGATCAAACAGTTAGCCAGTCAGTCGGTCAATCAGTTAGTCAGTCTGCCTGTCTGTCATTCTGTCTATATATATATATATATATATATATATATATATATAGAGACTATCTATATCTCCGTCTAAAATCTGTTTCTCTTTTTTTTTCTTTCTTTTTATATTATTATTATTATTATATTAACGAATATTGAAAGTAAGATATAAAGATGTAAAGAAATAGTTGAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_581#0 AATAAGGGTGTCGGATAGAGATAGAGAGAAGATTTCAAAACCCGATTTATATAGAAAAAC 60 consensus_581#1 ------------------------------------------------------------ consensus_581#0 ATGCGAAAAAAAAAAAACCAACCAAGAGGGATTTAAATGCGCGTAGATGATTTCAAGGGA 120 consensus_581#1 -----------AAAAAACCAACCAAGAGGGATTTAAATGCGCGTAGATGATTTCAAGGGA 49 ************************************************* consensus_581#0 AAAGCCACAAGTTATTGAATAGCGTAGTCCACCATTTGTCCGTGTAGTTTATCTGCTCGC 180 consensus_581#1 AAAGCCACAAGTTATTGAATAGCGTAGTCCACCATTTGTCCGTGTAGTTTATCTGCTCGC 109 ************************************************************ consensus_581#0 CTATCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTTTGTCTGTCTGTCTGT 240 consensus_581#1 CTATCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTTTGTCTGTCTGTCTGT 169 ************************************************************ consensus_581#0 CTGTCT----ATCTGTCTGTCCGCCTATTTGACTGACTGGCTGACTTAATCTGTCTGTCT 296 consensus_581#1 CTGTCTGTCTATCTGTCTGTCCGCCTATTTGACTGACTGGCTGACTTAATCTGTCTGTCT 229 ****** ************************************************** consensus_581#0 TGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTTTCCGTC 356 consensus_581#1 TGTCTGTCTGTCTGTCTGTCTGTCTGTCT------------------------TTCCGTC 265 ***************************** ******* consensus_581#0 TGTTCACCAAATCTGTTTGAAAAATTTGGCAGCCAGCCAGACAGTCGGTCGGTCGGTCGA 416 consensus_581#1 TGTTCACCAAATCTGTTTGAAAAATTTGGCAGCCAGCCAGACAGTCGGTCGGTCGGTCGA 325 ************************************************************ consensus_581#0 TCAGTCGNTCAAACAGTTAGCCAGTCAGTCGGTCAATCAGTTAGTCAGTCTGCCTGTCTG 476 consensus_581#1 TCAGTCGATCAAACAGTTAGCCAGTCAGTCGGTCAATCAGTTAGTCAGTCTGCCTGTCTG 385 ******* **************************************************** consensus_581#0 TCATTCTGTC-------ATATATATATATATATATATATATATATAGAGACTATCTATAT 529 consensus_581#1 TCATTCTGTCTATATATATATATATATATATATATATATATATATAGAGACTATCTATAT 445 ********** ******************************************* consensus_581#0 CTCCGTCTAAAATCTNNNNCTCTTTTTTTTTTCTTTCTTTTTATATTATTATTATTATTA 589 consensus_581#1 CTCCGTCTAAAATCTGTTTCTCTTTTTTTTT-CTTTCTTTTTATATTATTATTATTATTA 504 *************** ************ **************************** consensus_581#0 TATTAACGAATATTGAAAGTAAGATATAAAGATGTAAAGAAATAGTTGA------- 638 consensus_581#1 TATTAACGAATATTGAAAGTAAGATATAAAGATGTAAAGAAATAGTTGAAAAAAAA 560 ************************************************* |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |