These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_591#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 798 fasta sequence [TTTTTTTTTTTTGTTTCTTTGGTCCCGTTTCGCGTTTCGGAGTGGCCGCGAAACAACGCTTTCGAAATGAAACAATGACACGGACAAGANANNNCAGGTCCCAATGTTTCAGCGGAAATGAATGCTCGATTACTTCTGAGAGCAGAGAGACGAGCCTTCCTTTTCCTTCCTATATTAACAAACAATCTTTTGTTCTTTCGCGAATGTAAAATGAATGTGTGCGCGTTTCTTCTTCTTCTTCTTCTTCTTCTCGTTGGAACAACGGCCAAGATTAGCCAAGCGATCCTTTTCTTTCCTCCTTCTTTCTTCCGCCCCCAAAAAAATCTCAGATCTTCCCTTCTGTAATTTTTTCCCCCCCAATTCGATTGATCTTATCGCTATTCCAATCTTCTTCTCCTCTTCATCCCTTTTCACACTCGTTTCTCCTCGGTACGTGCGTGTATGTATGTCGTCGCACTTGTATGTTTCTCGAAGGCGTGAACATCTTCGGGATTGATCACATTGGATAGAACGGATCTCTGGACACGGAGTGCCTCGAACAACGTAACAGCATCGCCGATAATCGCGCGAAATCAACAATATATTACGAAACAATGCGTCGCGGTATATCCATAATATAATAATAATAATTACGTGTCTTATGTATTTTTTTTNNAGGTATATCCTTGTTTCTGCNNNTCTTCGTACGATACATAGCGATGGAATAATTTTTAAAAATGATGAAGAAATAGCGCTCTCTCGAAACAAATTCTGGAGTNAGAAACGTAAACTATATTAATCAAAGGGAACAATATTAAT] [-] EMBL BI515041 [TTTTTTTTTTTTGTTTCTTTGGTCCCGTTTCGCGTTTCGGAGTGGCCGCGAAACAACGCTTTCGAAATGAAACAATGACACGGACAAGANANNNCAGGTCCCAATGTTTCAGCGGAAATGAATGCTCGATTACTTCTGAGAGCAGAGAGACGAGCCTTCCTTTTCCTTCCTATATTAACAAACAATCTTTTGTTCTTTCGCGAATGTAAAATGAATGTGTGCGCGTTTCTTCTTCTTCTTCTTCTTCTTCTCGTTGGAACAACGGCCAACATTAGCCAAGCGATCCTTTTCTTTCCTCCTTCTTTCTTCCGCCCC ] [+] EMBL BI504990 [ tTTTTTTTTTTTTTTCTTCTCGTTGGAACAACGGCCAAGATTAGCCAAGCGATCCTTTTCTTTCCTCCTTCTTTCTTCCGCCCCCAAAAAAATCTCAGATCTTCCCTTCTGTAATTTTTTCCCCCCCAATTCGATTGATCTTATCGCTATTCCAATCTTCTTCTCCTCTTCATCCCTTTTCACACTCGTTTCTCCTCGGTACGTGCGTGTATGTATGTCGTCGCACTTGTATGTTTCTCGAAGGCGTGAACATCTTCGGGATTGATCACATTGGATAGAACGGATCTCTGGACACGGAGTGCCTCGAACAACGTAACAGCATCGCCGATAATCGCGCGAAATCAACAATATATTACGAAACAATGCGTCGCGGTATATCCATAATATAATAATAATAATTACGTGTCTTATGTATTTTTTTTNNAGGTATATCCTTGTTTCTGCNNNTCTTCGTACGATACATAGCGATGGAATAATTTTTAAAAATGATGAAGAAATAGCGCTCTCTCGAAACAAATTCTGGAGTNAGAAACGTAAACTATATTAATCAAAGGGAACAATATTAAT] consensusID : consensus_591#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 458 fasta sequence [GCGAAACAACGCTTTCGAAATGAAACAATGACACGGACAAGACACACCAGGTCCCAATGTTTCAGCGGAAATGAATGCTCGATTACTTCTGAGGGCAGAGAGACGAGCTTTCCTTTTCCTTCCTATATTAATAAACAATCTTTTGTGTCTTTCGCGAATTAAAAAGGAGAGAATGAAGCGCGTACGAGAGAGAGAAAGAGAGAGTGAGTGCGAAAGGATAGCGCGAAAGAATATGTTTGCTTATACATATATCTTATACAAATAGAATATATTATATAAATATATAAATAAATTTAATATTAACATAAACATTTTGTCAAATGTCGAAAATCATCTAAAAGCATATGAAAAAAGCTAACGATGATTTGATCTGTACCAAGTATGTAAGGTCATGTACTTGTTTATAAGGTAACTAAAAACTCAATTACAAAAACATTTCTGTTTTCGATCGTTTGCTA] [+] EMBL BI502802 [GCGAAACAACGCTTTCGAAATGAAACAATGACACGGACAAGACACACCAGGTCCCAATGTTTCAGCGGAAATGAATGCTCGATTACTTCTGAGGGCAGAGAGACGAGCTTTCCTTTTCCTTCCTATATTAATAAACAATCTTTTGT TCTTTCGCGAATTAAAAAGGAGAGAATGAAGCGCGTACGAGAGAGAGAAAGAGAGAGTGAGTGCGAAAGGATAGCGCGAAAGAATATGTTTGCTTATACATATATCTTATACAAATAGAATATATTATATAAATATATAAATAAATTTAATATTAACATAAACATTTTGTCAAATGTCGAAAATCATCTAAAAGCATATGAAAAAAGCTAACGATGATTTGATCTGTACCAAGTATGTAAGTTCATGTACTTGTTTAT ] [+] EMBL BI504772 [ AACAACGCTTTCGAAATGAAACAATGACACGGACAAGACACACCAGGTCCCAATGTTTCAGCGGAAATGAATGCTCGATTACTTCTGAGGGCAGAGAGACGAGCTTTCCTTTTCCTTCCTATATTAATAAACAATCTTTTGTGTCTTTCGCGAATTAAAAAGGAGAGAATGAAGCGCGTACGAGAGAGAGAAAGAGAGAGTGAGTGCGAAAGGATAGCGCGAAAGAATATGTTTGCTTATACATATATCTTATACAAATAGAATATATTATATAAATATATAAATAAATTTAATATTAACATAAACATTTTGTCAAATGTCGAAAATCATCTAAAAGCATATGAAAAAAGCTAACGATGATTTGATCTGTACCAAGTATGTAAGGTCATGTACTTGTTTATAAGGTAACTAAAAACTCAATTACAAAAACATTTCTGTTTTCGATCGTTTGCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_591#0 TTTTTTTTTTTTGTTTCTTTGGTCCCGTTTCGCGTTTCGGAGTGGCCGCGAAACAACGCT 60 consensus_591#1 -----------------------------------------------GCGAAACAACGCT 13 ************* consensus_591#0 TTCGAAATGAAACAATGACACGGACAAGANANNNCAGGTCCCAATGTTTCAGCGGAAATG 120 consensus_591#1 TTCGAAATGAAACAATGACACGGACAAGACACACCAGGTCCCAATGTTTCAGCGGAAATG 73 ***************************** * ************************** consensus_591#0 AATGCTCGATTACTTCTGAGAGCAGAGAGACGAGCCTTCCTTTTCCTTCCTATATTAACA 180 consensus_591#1 AATGCTCGATTACTTCTGAGGGCAGAGAGACGAGCTTTCCTTTTCCTTCCTATATTAATA 133 ******************** ************** ********************** * consensus_591#0 AACAATCTTTTGT-TCTTTCGCGAATGTAAAATGAATGTGTGCGCGTTTCTTCTTCTTCT 239 consensus_591#1 AACAATCTTTTGTGTCTTTCGCGAATTAAAAAGGAGAGAATGAAG--------CGCGTAC 185 ************* ************ **** ** * ** * * consensus_591#0 TCTTCTTCTTCTCGTTGGAACAACGGCCAAGATTAGC-CAAGCGATCCTTTTCTTTCCTC 298 consensus_591#1 GAGAGAGAGAAAGAGAGAGTGAGTGCGAAAGGATAGCGCGAAAGAATATGTTTGCTTATA 245 * * * *** **** * * ** * ** * * consensus_591#0 CTTCTTTCTTCCGCCCCCAAAAAAATCTCAGATCTTCCCTTCTGTAATTTTTTCCCCCCC 358 consensus_591#1 CATATATCTTATACAAATAGAATA-TATTATATAAATATATAAATAAATTTAATATTAAC 304 * * * **** * * ** * * * * ** * *** *** * consensus_591#0 A-ATTCGATTGATCTTATCGCTATTCCAATCTTCTTCTCCTCT-TCATCCCTTTTCACAC 416 consensus_591#1 ATAAACATTTTGTCAAATGTCGA---AAATCATCTAAAAGCATATGAAAAAAGCTAACGA 361 * * * ** ** ** * * **** *** * * * * ** consensus_591#0 TCGTTTCTCCTCGGTACGTGCGTGTATGTATGTCGTCGCACTTGTATGTTTCTCGAAGGC 476 consensus_591#1 TGATTTGATCT--GTAC---CAAGTATGTAAGGTCATGTACTTGTTTAT------AAGGT 410 * *** ** **** * ******* * * ****** * * **** consensus_591#0 GTGAACATCTTCGGGATTGATCACATTGGATAGAACGGATCTCTGGACACGGAGTGCCTC 536 consensus_591#1 AACTAAAAACTCAATTACAAAAACATTTC-TGTTTTCGATCGTTTGCTA----------- 458 * * ** * ***** * **** * * * consensus_591#0 GAACAACGTAACAGCATCGCCGATAATCGCGCGAAATCAACAATATATTACGAAACAATG 596 consensus_591#1 ------------------------------------------------------------ consensus_591#0 CGTCGCGGTATATCCATAATATAATAATAATAATTACGTGTCTTATGTATTTTTTTTNNA 656 consensus_591#1 ------------------------------------------------------------ consensus_591#0 GGTATATCCTTGTTTCTGCNNNTCTTCGTACGATACATAGCGATGGAATAATTTTTAAAA 716 consensus_591#1 ------------------------------------------------------------ consensus_591#0 ATGATGAAGAAATAGCGCTCTCTCGAAACAAATTCTGGAGTNAGAAACGTAAACTATATT 776 consensus_591#1 ------------------------------------------------------------ consensus_591#0 AATCAAAGGGAACAATATTAAT 798 consensus_591#1 ---------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |