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Apis mellifera
cluster # 591 cluster # 591       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_591#0 length = 798 sequences # 2  
consensus_591#1 length = 458 sequences # 2  

consensusID : consensus_591#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 798
fasta sequence
                              [TTTTTTTTTTTTGTTTCTTTGGTCCCGTTTCGCGTTTCGGAGTGGCCGCGAAACAACGCTTTCGAAATGAAACAATGACACGGACAAGANANNNCAGGTCCCAATGTTTCAGCGGAAATGAATGCTCGATTACTTCTGAGAGCAGAGAGACGAGCCTTCCTTTTCCTTCCTATATTAACAAACAATCTTTTGTTCTTTCGCGAATGTAAAATGAATGTGTGCGCGTTTCTTCTTCTTCTTCTTCTTCTTCTCGTTGGAACAACGGCCAAGATTAGCCAAGCGATCCTTTTCTTTCCTCCTTCTTTCTTCCGCCCCCAAAAAAATCTCAGATCTTCCCTTCTGTAATTTTTTCCCCCCCAATTCGATTGATCTTATCGCTATTCCAATCTTCTTCTCCTCTTCATCCCTTTTCACACTCGTTTCTCCTCGGTACGTGCGTGTATGTATGTCGTCGCACTTGTATGTTTCTCGAAGGCGTGAACATCTTCGGGATTGATCACATTGGATAGAACGGATCTCTGGACACGGAGTGCCTCGAACAACGTAACAGCATCGCCGATAATCGCGCGAAATCAACAATATATTACGAAACAATGCGTCGCGGTATATCCATAATATAATAATAATAATTACGTGTCTTATGTATTTTTTTTNNAGGTATATCCTTGTTTCTGCNNNTCTTCGTACGATACATAGCGATGGAATAATTTTTAAAAATGATGAAGAAATAGCGCTCTCTCGAAACAAATTCTGGAGTNAGAAACGTAAACTATATTAATCAAAGGGAACAATATTAAT]

[-] EMBL BI515041             [TTTTTTTTTTTTGTTTCTTTGGTCCCGTTTCGCGTTTCGGAGTGGCCGCGAAACAACGCTTTCGAAATGAAACAATGACACGGACAAGANANNNCAGGTCCCAATGTTTCAGCGGAAATGAATGCTCGATTACTTCTGAGAGCAGAGAGACGAGCCTTCCTTTTCCTTCCTATATTAACAAACAATCTTTTGTTCTTTCGCGAATGTAAAATGAATGTGTGCGCGTTTCTTCTTCTTCTTCTTCTTCTTCTCGTTGGAACAACGGCCAACATTAGCCAAGCGATCCTTTTCTTTCCTCCTTCTTTCTTCCGCCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BI504990             [                                                                                                                                                                                                                                       tTTTTTTTTTTTTTTCTTCTCGTTGGAACAACGGCCAAGATTAGCCAAGCGATCCTTTTCTTTCCTCCTTCTTTCTTCCGCCCCCAAAAAAATCTCAGATCTTCCCTTCTGTAATTTTTTCCCCCCCAATTCGATTGATCTTATCGCTATTCCAATCTTCTTCTCCTCTTCATCCCTTTTCACACTCGTTTCTCCTCGGTACGTGCGTGTATGTATGTCGTCGCACTTGTATGTTTCTCGAAGGCGTGAACATCTTCGGGATTGATCACATTGGATAGAACGGATCTCTGGACACGGAGTGCCTCGAACAACGTAACAGCATCGCCGATAATCGCGCGAAATCAACAATATATTACGAAACAATGCGTCGCGGTATATCCATAATATAATAATAATAATTACGTGTCTTATGTATTTTTTTTNNAGGTATATCCTTGTTTCTGCNNNTCTTCGTACGATACATAGCGATGGAATAATTTTTAAAAATGATGAAGAAATAGCGCTCTCTCGAAACAAATTCTGGAGTNAGAAACGTAAACTATATTAATCAAAGGGAACAATATTAAT]


>consensus_591#0 TTTTTTTTTTTTGTTTCTTTGGTCCCGTTTCGCGTTTCGGAGTGGCCGCGAAACAACGCT TTCGAAATGAAACAATGACACGGACAAGANANNNCAGGTCCCAATGTTTCAGCGGAAATG AATGCTCGATTACTTCTGAGAGCAGAGAGACGAGCCTTCCTTTTCCTTCCTATATTAACA AACAATCTTTTGTTCTTTCGCGAATGTAAAATGAATGTGTGCGCGTTTCTTCTTCTTCTT CTTCTTCTTCTCGTTGGAACAACGGCCAAGATTAGCCAAGCGATCCTTTTCTTTCCTCCT TCTTTCTTCCGCCCCCAAAAAAATCTCAGATCTTCCCTTCTGTAATTTTTTCCCCCCCAA TTCGATTGATCTTATCGCTATTCCAATCTTCTTCTCCTCTTCATCCCTTTTCACACTCGT TTCTCCTCGGTACGTGCGTGTATGTATGTCGTCGCACTTGTATGTTTCTCGAAGGCGTGA ACATCTTCGGGATTGATCACATTGGATAGAACGGATCTCTGGACACGGAGTGCCTCGAAC AACGTAACAGCATCGCCGATAATCGCGCGAAATCAACAATATATTACGAAACAATGCGTC GCGGTATATCCATAATATAATAATAATAATTACGTGTCTTATGTATTTTTTTTNNAGGTA TATCCTTGTTTCTGCNNNTCTTCGTACGATACATAGCGATGGAATAATTTTTAAAAATGA TGAAGAAATAGCGCTCTCTCGAAACAAATTCTGGAGTNAGAAACGTAAACTATATTAATC AAAGGGAACAATATTAAT



consensusID : consensus_591#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 458
fasta sequence
                              [GCGAAACAACGCTTTCGAAATGAAACAATGACACGGACAAGACACACCAGGTCCCAATGTTTCAGCGGAAATGAATGCTCGATTACTTCTGAGGGCAGAGAGACGAGCTTTCCTTTTCCTTCCTATATTAATAAACAATCTTTTGTGTCTTTCGCGAATTAAAAAGGAGAGAATGAAGCGCGTACGAGAGAGAGAAAGAGAGAGTGAGTGCGAAAGGATAGCGCGAAAGAATATGTTTGCTTATACATATATCTTATACAAATAGAATATATTATATAAATATATAAATAAATTTAATATTAACATAAACATTTTGTCAAATGTCGAAAATCATCTAAAAGCATATGAAAAAAGCTAACGATGATTTGATCTGTACCAAGTATGTAAGGTCATGTACTTGTTTATAAGGTAACTAAAAACTCAATTACAAAAACATTTCTGTTTTCGATCGTTTGCTA]

[+] EMBL BI502802             [GCGAAACAACGCTTTCGAAATGAAACAATGACACGGACAAGACACACCAGGTCCCAATGTTTCAGCGGAAATGAATGCTCGATTACTTCTGAGGGCAGAGAGACGAGCTTTCCTTTTCCTTCCTATATTAATAAACAATCTTTTGT TCTTTCGCGAATTAAAAAGGAGAGAATGAAGCGCGTACGAGAGAGAGAAAGAGAGAGTGAGTGCGAAAGGATAGCGCGAAAGAATATGTTTGCTTATACATATATCTTATACAAATAGAATATATTATATAAATATATAAATAAATTTAATATTAACATAAACATTTTGTCAAATGTCGAAAATCATCTAAAAGCATATGAAAAAAGCTAACGATGATTTGATCTGTACCAAGTATGTAAGTTCATGTACTTGTTTAT                                                     ]
[+] EMBL BI504772             [    AACAACGCTTTCGAAATGAAACAATGACACGGACAAGACACACCAGGTCCCAATGTTTCAGCGGAAATGAATGCTCGATTACTTCTGAGGGCAGAGAGACGAGCTTTCCTTTTCCTTCCTATATTAATAAACAATCTTTTGTGTCTTTCGCGAATTAAAAAGGAGAGAATGAAGCGCGTACGAGAGAGAGAAAGAGAGAGTGAGTGCGAAAGGATAGCGCGAAAGAATATGTTTGCTTATACATATATCTTATACAAATAGAATATATTATATAAATATATAAATAAATTTAATATTAACATAAACATTTTGTCAAATGTCGAAAATCATCTAAAAGCATATGAAAAAAGCTAACGATGATTTGATCTGTACCAAGTATGTAAGGTCATGTACTTGTTTATAAGGTAACTAAAAACTCAATTACAAAAACATTTCTGTTTTCGATCGTTTGCTA]


>consensus_591#1 GCGAAACAACGCTTTCGAAATGAAACAATGACACGGACAAGACACACCAGGTCCCAATGT TTCAGCGGAAATGAATGCTCGATTACTTCTGAGGGCAGAGAGACGAGCTTTCCTTTTCCT TCCTATATTAATAAACAATCTTTTGTGTCTTTCGCGAATTAAAAAGGAGAGAATGAAGCG CGTACGAGAGAGAGAAAGAGAGAGTGAGTGCGAAAGGATAGCGCGAAAGAATATGTTTGC TTATACATATATCTTATACAAATAGAATATATTATATAAATATATAAATAAATTTAATAT TAACATAAACATTTTGTCAAATGTCGAAAATCATCTAAAAGCATATGAAAAAAGCTAACG ATGATTTGATCTGTACCAAGTATGTAAGGTCATGTACTTGTTTATAAGGTAACTAAAAAC TCAATTACAAAAACATTTCTGTTTTCGATCGTTTGCTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_591#0      TTTTTTTTTTTTGTTTCTTTGGTCCCGTTTCGCGTTTCGGAGTGGCCGCGAAACAACGCT 60
consensus_591#1      -----------------------------------------------GCGAAACAACGCT 13
                                                                    *************

consensus_591#0      TTCGAAATGAAACAATGACACGGACAAGANANNNCAGGTCCCAATGTTTCAGCGGAAATG 120
consensus_591#1      TTCGAAATGAAACAATGACACGGACAAGACACACCAGGTCCCAATGTTTCAGCGGAAATG 73
                     ***************************** *   **************************

consensus_591#0      AATGCTCGATTACTTCTGAGAGCAGAGAGACGAGCCTTCCTTTTCCTTCCTATATTAACA 180
consensus_591#1      AATGCTCGATTACTTCTGAGGGCAGAGAGACGAGCTTTCCTTTTCCTTCCTATATTAATA 133
                     ******************** ************** ********************** *

consensus_591#0      AACAATCTTTTGT-TCTTTCGCGAATGTAAAATGAATGTGTGCGCGTTTCTTCTTCTTCT 239
consensus_591#1      AACAATCTTTTGTGTCTTTCGCGAATTAAAAAGGAGAGAATGAAG--------CGCGTAC 185
                     ************* ************  **** **  *  **             * *  

consensus_591#0      TCTTCTTCTTCTCGTTGGAACAACGGCCAAGATTAGC-CAAGCGATCCTTTTCTTTCCTC 298
consensus_591#1      GAGAGAGAGAAAGAGAGAGTGAGTGCGAAAGGATAGCGCGAAAGAATATGTTTGCTTATA 245
                                     *    *  *   ***  **** * *  **   * **   *  * 

consensus_591#0      CTTCTTTCTTCCGCCCCCAAAAAAATCTCAGATCTTCCCTTCTGTAATTTTTTCCCCCCC 358
consensus_591#1      CATATATCTTATACAAATAGAATA-TATTATATAAATATATAAATAAATTTAATATTAAC 304
                     * * * ****   *    * ** * * * * **       *   *** ***        *

consensus_591#0      A-ATTCGATTGATCTTATCGCTATTCCAATCTTCTTCTCCTCT-TCATCCCTTTTCACAC 416
consensus_591#1      ATAAACATTTTGTCAAATGTCGA---AAATCATCTAAAAGCATATGAAAAAAGCTAACGA 361
                     * *  *  **  **  **  * *    **** ***       * * *       * **  

consensus_591#0      TCGTTTCTCCTCGGTACGTGCGTGTATGTATGTCGTCGCACTTGTATGTTTCTCGAAGGC 476
consensus_591#1      TGATTTGATCT--GTAC---CAAGTATGTAAGGTCATGTACTTGTTTAT------AAGGT 410
                     *  ***   **  ****   *  ******* *     * ****** * *      **** 

consensus_591#0      GTGAACATCTTCGGGATTGATCACATTGGATAGAACGGATCTCTGGACACGGAGTGCCTC 536
consensus_591#1      AACTAAAAACTCAATTACAAAAACATTTC-TGTTTTCGATCGTTTGCTA----------- 458
                         * *   **       *  *****   *      ****  * *  *           

consensus_591#0      GAACAACGTAACAGCATCGCCGATAATCGCGCGAAATCAACAATATATTACGAAACAATG 596
consensus_591#1      ------------------------------------------------------------
                                                                                 

consensus_591#0      CGTCGCGGTATATCCATAATATAATAATAATAATTACGTGTCTTATGTATTTTTTTTNNA 656
consensus_591#1      ------------------------------------------------------------
                                                                                 

consensus_591#0      GGTATATCCTTGTTTCTGCNNNTCTTCGTACGATACATAGCGATGGAATAATTTTTAAAA 716
consensus_591#1      ------------------------------------------------------------
                                                                                 

consensus_591#0      ATGATGAAGAAATAGCGCTCTCTCGAAACAAATTCTGGAGTNAGAAACGTAAACTATATT 776
consensus_591#1      ------------------------------------------------------------
                                                                                 

consensus_591#0      AATCAAAGGGAACAATATTAAT 798
consensus_591#1      ----------------------
                                           




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)