These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_599#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 952 fasta sequence [CAAAGATGCCGAATTAATGGGTTAATTAAAGTAAAACGCGCGCGCGCGAAATTGAGTTCATTTTGTTTGTCTCGTGTTTAGACTGCTCAAGAGCCTAATTAAAAAGTTCTACTCACAAAGTCATTAGAAATTGTTTCTAGTTTGTAATAACGAGTAATAGCATTACGACGAGTATGAATTTATCTCTAAGCTCGTAATCGCGTTAATAGAGGCGCACTGTACTACGTTAACGCACCAACATTATTCAGCTTGTAAGATAGATCGTATTCCTTCCATTTGAATCAGGCTCCTAAGAGTCGCGAGATGTGTAATACATTACGATATATATTTCCTTCGGTAAAAAAATAATATCTATTGTATTTATTCACAAAAGAAGAAAACGCAATGTTCCTCGATTGAACAATTTCTTAATGAAGAAAATCAAAAATTAATTCTTCTTTTTTAATCGAATAACCTGCATTGATTTATCCTGTATATAGTATATAATAATGAATCGGCAATAAGGAAAGAAATAAAGAAAGAAAATCTCGCGTCTCTCGGCGACACTGCTACATAGTGTATATATATATACTGAACAACATTGCTACGTATTAAATATCTATAACGATGGAACGATTATTATCATCACTTTTATGATCACCGCGATAGATTTAAGCGATATCCATGAAAGCAACGTCCTTCCTAATTATTGTTTTTATGCCTTTTCAAGTTAAATCATATTCATATACAAACGGTGAAGTATGATGTTAAGTCAATGCATGCTTGTTAAAGCATGAATAAAAAACAGTTTTGAGTCGAAGAAAATCATATTAAAGATAAGTATTAAATGTTCCTTAAATATTTTATTGTTTGTTTTCGATCGATAAAAACGAAAAATCGCTGATGCGTGTATATCGTTTCAAAAACTGATTGATCGACTGGTTGATTCGGATTAGTAAAGCAATATTGTACG] [+] EMBL BI509831 [CAAAGATGCCGAATTAATGGGTTAATTAAAGTAAAACGCGCGCGCGCGAAATTGAGTTCATTTTGTTTGTCTCGTGTTTAGACTGCTCAAGAGCCTAATTAAAAAGTTCTACTCACAAAGTCATTAGAAATTGTTTCTAGTTTGTAATAACGAGTAATAGCATTACGACGAGTATGAATTTATCTCTAAGCTCGTAATCGCGTTAATAGAGGCGCACTGTACTACGTTAACGCACCAACATTATTCAGCTTGTAAGATAGATCGTATTCCTTCCATTTGAATCAGGCTCCTAAGAGTCGCGAGATGTGTAATACATTACGATATATATTTCCTTCGGTAAAAAAATAATATCTATTGTATTTATTCACAAAAGAAGAAAACGCAATGTTCCTCGATTGAACAATTTCTTAATGAAGAAAATCAAAAATTAATTCTTCTTTTTTAATCGAATAACCTGCATTGATTTATCCTGTATATAGTATATAATAATGAATCGGCAATAAGGAAAGAAATAAAGAAAGAAAATCTCGCGTCTCTCGGCGACACTGCTACATAGTGTATATATATATACTGAACAACATTGCTACGTATTA ] [-] EMBL BI504595 [ ATCTATTGTATTTATTCACAAAAGAAGAAAACGCAATGTTCCTCGATTGAACAATTTCTTAATGAAGAAAATCAAAAATTAATTCTTCTTTTTTAATCGAATAACCTGCATTGATTTATCCTGTATATAGTATATAATAATGAATCGGCAATAAGGAAAGAAATAAAGAAAGAAAATCTCGCGTCTCTCGGCGACACTGCTACATAGTGTATATATATATACTGAACAACATTGCTACGTATTAAATATCTATAACGATGGAACGATTATTATCATCACTTTTATGATCACCGCGATAGATTTAAGCGATATCCATGAAAGCAACGTCCTTCCTAATTATTGTTTTTATGCCTTTTCAAGTTAAATCATATTCATATACAAACGGTGAAGTATGATGTTAAGTCAATGCATGCTTGTTAAAGCATGAATAAAAAACAGTTTTGAGTCGAAGAAAATCATATTAAAGATAAGTATTAAATGTTCCTTAAATATTTTATTGTTTGTTTTCGATCGATAAAAACGAAAAATCGCTGATGCGTGTATATCGTTTCAAAAACTGATTGATCGACTGGTTGATTCGGATTAGTAAAGCAATATTGTACG] [-] EMBL BI515525 [ CGATATCCATGAAAGCAACGTCCTTCCTAATTATTGTTTTTATGCCTTTTCAAGTTAAATCATATTCATATACAAACGGTGAAGTATGATGTTAAGTCAATGCATGCTTGTTAAAGCATGAATAAAAAACAGTTTTGAGTCGAAGAAAATCATATTAAAGATAAGTATTAAATGTTCCTTAAATATTTTATTGTTTGTTTTCGATCGATAAAAACGAAAAATCGCTGATGCGTGTATATCGTTTCAAAAACTGATTGATCGACTGGTTGATTCGGATTAGTAAAGCAATATTGTACG] consensusID : consensus_599#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 201 fasta sequence [GATGCAAAAAAATAATCAAAGATGCCGAATTAATGGGTTAATTAAAGTAAAACGCGCGCGCGCGAAATTGAGTTCATTTTGTTTGTCTCGTGTTTAGACTGCTCAAGAGCCTAAAAAAACGATCACAATTCCGACGGCGCGGCCAAGATTCGACGGTCTCCTTGTGCTTAAAGAGAAGATTTAAGAAAAAACAAAAAAAAA] [+] EMBL BI508198 [GATGCAAAAAAATAATCAAAGATGCCGAATTAATGGGTTAATTAAAGTAAAACGCGCGCGCGCGAAATTGAGTTCATTTTGTTTGTCTCGTGTTTAGACTGCTCAAGAGCCTAAAAAAACGATCACAATTCCGACGGCGCGGCCAAGATTCGACGGTCTCCTTGTGCTTAAAGAGAAGATTTAAGAAAAAACAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_599#0 ----------------CAAAGATGCCGAATTAATGGGTTAATTAAAGTAAAACGCGCGCG 44 consensus_599#1 GATGCAAAAAAATAATCAAAGATGCCGAATTAATGGGTTAATTAAAGTAAAACGCGCGCG 60 ******************************************** consensus_599#0 CGCGAAATTGAGTTCATTTTGTTTGTCTCGTGTTTAGACTGCTCAAGAGCCTAATTAAAA 104 consensus_599#1 CGCGAAATTGAGTTCATTTTGTTTGTCTCGTGTTTAGACTGCTCAAGAGCCTAAAAAAAC 120 ****************************************************** *** consensus_599#0 AGTTCTACTCACAAAGTCATTAGAAATTGTTTCTAGTTTG-TAATAACGAGTAATAGCAT 163 consensus_599#1 GATCACAATTCCGACGGCGCGGCCAAGATTCGACGGTCTCCTTGTGCTTAAAGAGAAGAT 180 * * * * * * * ** * ** * * * * * * ** consensus_599#0 TACGACGAGTATGAATTTATCTCTAAGCTCGTAATCGCGTTAATAGAGGCGCACTGTACT 223 consensus_599#1 TTAAGAAAAAACAAAAAAAAA--------------------------------------- 201 * * * ** * consensus_599#0 ACGTTAACGCACCAACATTATTCAGCTTGTAAGATAGATCGTATTCCTTCCATTTGAATC 283 consensus_599#1 ------------------------------------------------------------ consensus_599#0 AGGCTCCTAAGAGTCGCGAGATGTGTAATACATTACGATATATATTTCCTTCGGTAAAAA 343 consensus_599#1 ------------------------------------------------------------ consensus_599#0 AATAATATCTATTGTATTTATTCACAAAAGAAGAAAACGCAATGTTCCTCGATTGAACAA 403 consensus_599#1 ------------------------------------------------------------ consensus_599#0 TTTCTTAATGAAGAAAATCAAAAATTAATTCTTCTTTTTTAATCGAATAACCTGCATTGA 463 consensus_599#1 ------------------------------------------------------------ consensus_599#0 TTTATCCTGTATATAGTATATAATAATGAATCGGCAATAAGGAAAGAAATAAAGAAAGAA 523 consensus_599#1 ------------------------------------------------------------ consensus_599#0 AATCTCGCGTCTCTCGGCGACACTGCTACATAGTGTATATATATATACTGAACAACATTG 583 consensus_599#1 ------------------------------------------------------------ consensus_599#0 CTACGTATTAAATATCTATAACGATGGAACGATTATTATCATCACTTTTATGATCACCGC 643 consensus_599#1 ------------------------------------------------------------ consensus_599#0 GATAGATTTAAGCGATATCCATGAAAGCAACGTCCTTCCTAATTATTGTTTTTATGCCTT 703 consensus_599#1 ------------------------------------------------------------ consensus_599#0 TTCAAGTTAAATCATATTCATATACAAACGGTGAAGTATGATGTTAAGTCAATGCATGCT 763 consensus_599#1 ------------------------------------------------------------ consensus_599#0 TGTTAAAGCATGAATAAAAAACAGTTTTGAGTCGAAGAAAATCATATTAAAGATAAGTAT 823 consensus_599#1 ------------------------------------------------------------ consensus_599#0 TAAATGTTCCTTAAATATTTTATTGTTTGTTTTCGATCGATAAAAACGAAAAATCGCTGA 883 consensus_599#1 ------------------------------------------------------------ consensus_599#0 TGCGTGTATATCGTTTCAAAAACTGATTGATCGACTGGTTGATTCGGATTAGTAAAGCAA 943 consensus_599#1 ------------------------------------------------------------ consensus_599#0 TATTGTACG 952 consensus_599#1 --------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |