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Apis mellifera
cluster # 611 cluster # 611       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_611#0 length = 709 sequences # 3  
consensus_611#1 length = 180 sequences # 1  

consensusID : consensus_611#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 709
fasta sequence
                              [TCAAGAAGGTTGGAGGCCTTTCCTTCTGTTCCAATTGAGAAAGGGATTCGCAATGGGTGCATATAAATATATGCAAGAACTTTATCGCAAGAAGCAAAGCGATGTACTCCGCTTCTTGCTTCGTGTTAGATGTTGGCAATATCGTCAATTGACTAAAATGCATCGTGCTCCTAGACCGTCTAGGCCTGATAAAGCACGCCGTTTAGGTTATAAAGCTAAGCAAGGGTTTGTCATATTTAGAATTCGTGTAAGAAGAGGTGGGCGCAAACGTCCTGTTCCTAAAGGTGCAACTTATGGAAAACCAAAAAGTCATGGTGTTAATCA-GTTGAAACCTACTAGAAAATTACA-GTCTGTTGCTGAAGAACGTGTTGGTC-GTCGTTGTGGTGGTCTACGAGTTTTAAACAGTTATTGGGTAGCTCAAGATTCTTCATATAA-ATATTATGAAGTTATTTTGGTTGATCCAGCACATAAGGCAATTCGTAATGAT-CCAAAAGTTAATTGGATATGTAATGCAGTACATAAACATCGTGAACTTCGTGGAAAGACATCAGCTGGCAGAAGTTCACGCGGTTTAGGCAAAGGACATCGTTATTCGCAAACTATTGGTGGTTCTCGTCGTGCAGCATGGCTGAGAAGAAACTCTTTATCGCTTCGCAGAAAGCGATAAAGTTTTTAAATATTTCTAATGATAAGTACATGATACATCATT]

[+] EMBL BG101560             [TCAAGAAGGTTGGAGGCCTTTCCTTCTGTTCCAATTGAGAAAGGGATTCGCAATGGGTGCATATAAATATATGCAAGAACTTTATCGCAAGAAGCAAAGCGATGTACTCCGCTTCTTGCTTCGTGTTAGATGTTGGCAATATCGTCAATTGACTAAAATGCATCGTGCTCCTAGACCGTCTAGGCCTGATAAAGCACGCCGTTTAGGTTATAAAGCTAAGCAAGGGTTTGTCATATTTAGAATTCGTGTAAGAAGAGGTGGGCGCAAACGTCCTGTTCCTAAAGGTGCAACTTATGGAAAACCAAAAAGTCATGGTGTTAATCANGTTGAAACCTACTAGAAAATTACANGTCTGTTGCTGAAGAACGTGTTGGTCTGTCGTTGTGGTGGTCTACGAGTTTTNAACAGTTATTGGGTAGCTCNAGATTCTTCATATAACATATTATGAAGTTATTTTGGTTGATCCAGCACATAAGGCAATTCGTAATGATCCCAAAAGTTAAT                                                                                                                                                                                                                  ]
[-] EMBL BI509704             [                                                                                                         ACTCCGCTTCTTGCTTCGTGTTAGATGTTGGCAATATCGTCAATTGACTAAAATGCATCGTGCTCCTAGACCGTCTAGGNNTGATAAAGCACGCCGTTTAGGTTATAAAGCTAAGCAAGGGTTTGTCATATTTAGAATTCGTGTAAGAAGAGGTGGGCGCAAACGTCCTGTTCCTAAAGGTGCAACTTATGGAAAACCAAAAAGTCATGGTGTTAATCA GTTGAAACCTACTAGNNNATTACA GTCTGTTGCTGAAGAACGTGTTGGTC GTCGTTGTGGTGGTCTACGAGTTTTAAACAGTTATTGGGTAGCTCAAGATTCTTCATATAA ATATTATGAAGTTATTTTGGTTGATCCAGCACATAAGGCAATTCGTAATGAT CCAAAAGTTAATTGGATATGTAATGCAGTACATAAACATCGTGAACTTCGTGGAAAGACATCAGCTGGCAGAAGTTCACGCGGTTTAGGCAAAGGACATCGTTATTCGCAAACTATTGGTGGTTCTCGTCGTGCAGCATGGCTGAGAAGAAACTCTTTATCGCTTCGCAGAAAGCGATAAAGTTTTTAAATATTTC                          ]
[+] EMBL BI516576             [                                                                                                                                                                                  TCTAGGCCTGATAAAGCACGCCGTTTAGGTTATAAAGCTAAGCAAGGGTTTGTCATATTTAGAATTCGTGTAAGAAGAGGTGGGCGCAAACGTCCTGTTCCTAAAGGTGCAACTTATGGAAAACCAAAAAGTCATGGTGTTAATCA GTTGAAACCTACTAGAAAATTACA GTCTGTTGCTGAAGAACGTGTTGGTC GTCGTTGTGGTGGTCTACGAGTTTTAAACAGTTATTGGGTAGCTCAAGATTCTTCATATAA ATATTATGAAGTTATTTTGGTTGATCCAGCACATAAGGCAATTCGTAATGAT CCAAAAGTTAATTGGATATGTAATGCAGTACATAAACATCGTGAACTTCGTGGAAAGACATCAGCTGGCAGAAGTTCACGCGGTTTAGGCAAAGGACATCGTTATTCGCAAACTATTGGTGGTTCTCGTCGTGCAGCATGGCTGAGAAGAAACTCTTTATCGCTTCGCAGAAAGCGATAAAGTTTTTAAATATTTCTAATGATAAGTACATGATACATCATT]


>consensus_611#0 TCAAGAAGGTTGGAGGCCTTTCCTTCTGTTCCAATTGAGAAAGGGATTCGCAATGGGTGC ATATAAATATATGCAAGAACTTTATCGCAAGAAGCAAAGCGATGTACTCCGCTTCTTGCT TCGTGTTAGATGTTGGCAATATCGTCAATTGACTAAAATGCATCGTGCTCCTAGACCGTC TAGGCCTGATAAAGCACGCCGTTTAGGTTATAAAGCTAAGCAAGGGTTTGTCATATTTAG AATTCGTGTAAGAAGAGGTGGGCGCAAACGTCCTGTTCCTAAAGGTGCAACTTATGGAAA ACCAAAAAGTCATGGTGTTAATCAGTTGAAACCTACTAGAAAATTACAGTCTGTTGCTGA AGAACGTGTTGGTCGTCGTTGTGGTGGTCTACGAGTTTTAAACAGTTATTGGGTAGCTCA AGATTCTTCATATAAATATTATGAAGTTATTTTGGTTGATCCAGCACATAAGGCAATTCG TAATGATCCAAAAGTTAATTGGATATGTAATGCAGTACATAAACATCGTGAACTTCGTGG AAAGACATCAGCTGGCAGAAGTTCACGCGGTTTAGGCAAAGGACATCGTTATTCGCAAAC TATTGGTGGTTCTCGTCGTGCAGCATGGCTGAGAAGAAACTCTTTATCGCTTCGCAGAAA GCGATAAAGTTTTTAAATATTTCTAATGATAAGTACATGATACATCATT



consensusID : consensus_611#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 180
fasta sequence
                              [TGCTTCGTGTTAGATGTTGGCAATATCGTCAATTGACTAAAATGCATCGTGCTCCTAGACCGTCTAGGCCTGATAAAGCACGCCGTTTAGGTTATAAAGCTAAGCAAGAATTCGTGTAAGAAGAGGTGGGCGCAAACGTCCTGTTCCTAAAGGTGCAACTTATGGAAAACCAAAAAGTCA]

[+] EMBL BI510218             [TGCTTCGTGTTAGATGTTGGCAATATCGTCAATTGACTAAAATGCATCGTGCTCCTAGACCGTCTAGGCCTGATAAAGCACGCCGTTTAGGTTATAAAGCTAAGCAAGAATTCGTGTAAGAAGAGGTGGGCGCAAACGTCCTGTTCCTAAAGGTGCAACTTATGGAAAACCAAAAAGTCA]


>consensus_611#1 TGCTTCGTGTTAGATGTTGGCAATATCGTCAATTGACTAAAATGCATCGTGCTCCTAGAC CGTCTAGGCCTGATAAAGCACGCCGTTTAGGTTATAAAGCTAAGCAAGAATTCGTGTAAG AAGAGGTGGGCGCAAACGTCCTGTTCCTAAAGGTGCAACTTATGGAAAACCAAAAAGTCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_611#0      TCAAGAAGGTTGGAGGCCTTTCCTTCTGTTCCAATTGAGAAAGGGATTCGCAATGGGTGC 60
consensus_611#1      ------------------------------------------------------------
                                                                                 

consensus_611#0      ATATAAATATATGCAAGAACTTTATCGCAAGAAGCAAAGCGATGTACTCCGCTTCTTGCT 120
consensus_611#1      --------------------------------------------------------TGCT 4
                                                                             ****

consensus_611#0      TCGTGTTAGATGTTGGCAATATCGTCAATTGACTAAAATGCATCGTGCTCCTAGACCGTC 180
consensus_611#1      TCGTGTTAGATGTTGGCAATATCGTCAATTGACTAAAATGCATCGTGCTCCTAGACCGTC 64
                     ************************************************************

consensus_611#0      TAGGCCTGATAAAGCACGCCGTTTAGGTTATAAAGCTAAGCAAGGGTTTGTCATATTTAG 240
consensus_611#1      TAGGCCTGATAAAGCACGCCGTTTAGGTTATAAAGCTAAGCAAG---------------- 108
                     ********************************************                

consensus_611#0      AATTCGTGTAAGAAGAGGTGGGCGCAAACGTCCTGTTCCTAAAGGTGCAACTTATGGAAA 300
consensus_611#1      AATTCGTGTAAGAAGAGGTGGGCGCAAACGTCCTGTTCCTAAAGGTGCAACTTATGGAAA 168
                     ************************************************************

consensus_611#0      ACCAAAAAGTCATGGTGTTAATCAGTTGAAACCTACTAGAAAATTACAGTCTGTTGCTGA 360
consensus_611#1      ACCAAAAAGTCA------------------------------------------------ 180
                     ************                                                

consensus_611#0      AGAACGTGTTGGTCGTCGTTGTGGTGGTCTACGAGTTTTAAACAGTTATTGGGTAGCTCA 420
consensus_611#1      ------------------------------------------------------------
                                                                                 

consensus_611#0      AGATTCTTCATATAAATATTATGAAGTTATTTTGGTTGATCCAGCACATAAGGCAATTCG 480
consensus_611#1      ------------------------------------------------------------
                                                                                 

consensus_611#0      TAATGATCCAAAAGTTAATTGGATATGTAATGCAGTACATAAACATCGTGAACTTCGTGG 540
consensus_611#1      ------------------------------------------------------------
                                                                                 

consensus_611#0      AAAGACATCAGCTGGCAGAAGTTCACGCGGTTTAGGCAAAGGACATCGTTATTCGCAAAC 600
consensus_611#1      ------------------------------------------------------------
                                                                                 

consensus_611#0      TATTGGTGGTTCTCGTCGTGCAGCATGGCTGAGAAGAAACTCTTTATCGCTTCGCAGAAA 660
consensus_611#1      ------------------------------------------------------------
                                                                                 

consensus_611#0      GCGATAAAGTTTTTAAATATTTCTAATGATAAGTACATGATACATCATT 709
consensus_611#1      -------------------------------------------------
                                                                      




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)