These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_611#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 709 fasta sequence [TCAAGAAGGTTGGAGGCCTTTCCTTCTGTTCCAATTGAGAAAGGGATTCGCAATGGGTGCATATAAATATATGCAAGAACTTTATCGCAAGAAGCAAAGCGATGTACTCCGCTTCTTGCTTCGTGTTAGATGTTGGCAATATCGTCAATTGACTAAAATGCATCGTGCTCCTAGACCGTCTAGGCCTGATAAAGCACGCCGTTTAGGTTATAAAGCTAAGCAAGGGTTTGTCATATTTAGAATTCGTGTAAGAAGAGGTGGGCGCAAACGTCCTGTTCCTAAAGGTGCAACTTATGGAAAACCAAAAAGTCATGGTGTTAATCA-GTTGAAACCTACTAGAAAATTACA-GTCTGTTGCTGAAGAACGTGTTGGTC-GTCGTTGTGGTGGTCTACGAGTTTTAAACAGTTATTGGGTAGCTCAAGATTCTTCATATAA-ATATTATGAAGTTATTTTGGTTGATCCAGCACATAAGGCAATTCGTAATGAT-CCAAAAGTTAATTGGATATGTAATGCAGTACATAAACATCGTGAACTTCGTGGAAAGACATCAGCTGGCAGAAGTTCACGCGGTTTAGGCAAAGGACATCGTTATTCGCAAACTATTGGTGGTTCTCGTCGTGCAGCATGGCTGAGAAGAAACTCTTTATCGCTTCGCAGAAAGCGATAAAGTTTTTAAATATTTCTAATGATAAGTACATGATACATCATT] [+] EMBL BG101560 [TCAAGAAGGTTGGAGGCCTTTCCTTCTGTTCCAATTGAGAAAGGGATTCGCAATGGGTGCATATAAATATATGCAAGAACTTTATCGCAAGAAGCAAAGCGATGTACTCCGCTTCTTGCTTCGTGTTAGATGTTGGCAATATCGTCAATTGACTAAAATGCATCGTGCTCCTAGACCGTCTAGGCCTGATAAAGCACGCCGTTTAGGTTATAAAGCTAAGCAAGGGTTTGTCATATTTAGAATTCGTGTAAGAAGAGGTGGGCGCAAACGTCCTGTTCCTAAAGGTGCAACTTATGGAAAACCAAAAAGTCATGGTGTTAATCANGTTGAAACCTACTAGAAAATTACANGTCTGTTGCTGAAGAACGTGTTGGTCTGTCGTTGTGGTGGTCTACGAGTTTTNAACAGTTATTGGGTAGCTCNAGATTCTTCATATAACATATTATGAAGTTATTTTGGTTGATCCAGCACATAAGGCAATTCGTAATGATCCCAAAAGTTAAT ] [-] EMBL BI509704 [ ACTCCGCTTCTTGCTTCGTGTTAGATGTTGGCAATATCGTCAATTGACTAAAATGCATCGTGCTCCTAGACCGTCTAGGNNTGATAAAGCACGCCGTTTAGGTTATAAAGCTAAGCAAGGGTTTGTCATATTTAGAATTCGTGTAAGAAGAGGTGGGCGCAAACGTCCTGTTCCTAAAGGTGCAACTTATGGAAAACCAAAAAGTCATGGTGTTAATCA GTTGAAACCTACTAGNNNATTACA GTCTGTTGCTGAAGAACGTGTTGGTC GTCGTTGTGGTGGTCTACGAGTTTTAAACAGTTATTGGGTAGCTCAAGATTCTTCATATAA ATATTATGAAGTTATTTTGGTTGATCCAGCACATAAGGCAATTCGTAATGAT CCAAAAGTTAATTGGATATGTAATGCAGTACATAAACATCGTGAACTTCGTGGAAAGACATCAGCTGGCAGAAGTTCACGCGGTTTAGGCAAAGGACATCGTTATTCGCAAACTATTGGTGGTTCTCGTCGTGCAGCATGGCTGAGAAGAAACTCTTTATCGCTTCGCAGAAAGCGATAAAGTTTTTAAATATTTC ] [+] EMBL BI516576 [ TCTAGGCCTGATAAAGCACGCCGTTTAGGTTATAAAGCTAAGCAAGGGTTTGTCATATTTAGAATTCGTGTAAGAAGAGGTGGGCGCAAACGTCCTGTTCCTAAAGGTGCAACTTATGGAAAACCAAAAAGTCATGGTGTTAATCA GTTGAAACCTACTAGAAAATTACA GTCTGTTGCTGAAGAACGTGTTGGTC GTCGTTGTGGTGGTCTACGAGTTTTAAACAGTTATTGGGTAGCTCAAGATTCTTCATATAA ATATTATGAAGTTATTTTGGTTGATCCAGCACATAAGGCAATTCGTAATGAT CCAAAAGTTAATTGGATATGTAATGCAGTACATAAACATCGTGAACTTCGTGGAAAGACATCAGCTGGCAGAAGTTCACGCGGTTTAGGCAAAGGACATCGTTATTCGCAAACTATTGGTGGTTCTCGTCGTGCAGCATGGCTGAGAAGAAACTCTTTATCGCTTCGCAGAAAGCGATAAAGTTTTTAAATATTTCTAATGATAAGTACATGATACATCATT] consensusID : consensus_611#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 180 fasta sequence [TGCTTCGTGTTAGATGTTGGCAATATCGTCAATTGACTAAAATGCATCGTGCTCCTAGACCGTCTAGGCCTGATAAAGCACGCCGTTTAGGTTATAAAGCTAAGCAAGAATTCGTGTAAGAAGAGGTGGGCGCAAACGTCCTGTTCCTAAAGGTGCAACTTATGGAAAACCAAAAAGTCA] [+] EMBL BI510218 [TGCTTCGTGTTAGATGTTGGCAATATCGTCAATTGACTAAAATGCATCGTGCTCCTAGACCGTCTAGGCCTGATAAAGCACGCCGTTTAGGTTATAAAGCTAAGCAAGAATTCGTGTAAGAAGAGGTGGGCGCAAACGTCCTGTTCCTAAAGGTGCAACTTATGGAAAACCAAAAAGTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_611#0 TCAAGAAGGTTGGAGGCCTTTCCTTCTGTTCCAATTGAGAAAGGGATTCGCAATGGGTGC 60 consensus_611#1 ------------------------------------------------------------ consensus_611#0 ATATAAATATATGCAAGAACTTTATCGCAAGAAGCAAAGCGATGTACTCCGCTTCTTGCT 120 consensus_611#1 --------------------------------------------------------TGCT 4 **** consensus_611#0 TCGTGTTAGATGTTGGCAATATCGTCAATTGACTAAAATGCATCGTGCTCCTAGACCGTC 180 consensus_611#1 TCGTGTTAGATGTTGGCAATATCGTCAATTGACTAAAATGCATCGTGCTCCTAGACCGTC 64 ************************************************************ consensus_611#0 TAGGCCTGATAAAGCACGCCGTTTAGGTTATAAAGCTAAGCAAGGGTTTGTCATATTTAG 240 consensus_611#1 TAGGCCTGATAAAGCACGCCGTTTAGGTTATAAAGCTAAGCAAG---------------- 108 ******************************************** consensus_611#0 AATTCGTGTAAGAAGAGGTGGGCGCAAACGTCCTGTTCCTAAAGGTGCAACTTATGGAAA 300 consensus_611#1 AATTCGTGTAAGAAGAGGTGGGCGCAAACGTCCTGTTCCTAAAGGTGCAACTTATGGAAA 168 ************************************************************ consensus_611#0 ACCAAAAAGTCATGGTGTTAATCAGTTGAAACCTACTAGAAAATTACAGTCTGTTGCTGA 360 consensus_611#1 ACCAAAAAGTCA------------------------------------------------ 180 ************ consensus_611#0 AGAACGTGTTGGTCGTCGTTGTGGTGGTCTACGAGTTTTAAACAGTTATTGGGTAGCTCA 420 consensus_611#1 ------------------------------------------------------------ consensus_611#0 AGATTCTTCATATAAATATTATGAAGTTATTTTGGTTGATCCAGCACATAAGGCAATTCG 480 consensus_611#1 ------------------------------------------------------------ consensus_611#0 TAATGATCCAAAAGTTAATTGGATATGTAATGCAGTACATAAACATCGTGAACTTCGTGG 540 consensus_611#1 ------------------------------------------------------------ consensus_611#0 AAAGACATCAGCTGGCAGAAGTTCACGCGGTTTAGGCAAAGGACATCGTTATTCGCAAAC 600 consensus_611#1 ------------------------------------------------------------ consensus_611#0 TATTGGTGGTTCTCGTCGTGCAGCATGGCTGAGAAGAAACTCTTTATCGCTTCGCAGAAA 660 consensus_611#1 ------------------------------------------------------------ consensus_611#0 GCGATAAAGTTTTTAAATATTTCTAATGATAAGTACATGATACATCATT 709 consensus_611#1 ------------------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |