These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_625#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 649 fasta sequence [TGACTTCTTCAGAAATTGAAGTGGAGAATTTGAGTGAGAAAAATGCAGAAGAATCTGCAATTTTAGAAGTAAGCACAATAGCAGTCGGTGGTGTTATTAAACAGGAGAATCGTGATGTTGATTTTCTTTCAAATTGTAGTACTTCCATCGAAGGTTCCGTGATAGCTTCACCCTCCATTGACAGTTTCTCTACTTTGCCAGAGCAAGAAATATCAGATTTTCAGATAGATTCTAAAGATTCTAGAGATTTACAAGTAAAAGTAGATAATCCTCAAAAGCATCTTGAAACTCTTGAAACTTATATTACTTTTCGTATAACAACAAAATCCACAAGACAAGAATTTGAAGAAGGAGAATATATTGTTAGAAGACGTTATAATGATTTTATTTGGTTAAGACAAAAAAAAGAAGATTCATATCCTACACATATTATACCACCAATGCCTGGAAAACACACATTACTTGCTCAGTTAGATCGTTATTCCAAAGAAATTTATTATAGCACGCATGGAAATTATTACATATGTTTTCTTACCAGAGTTATAAATCATCCAATTCTTAGCTATGACAACAATTTGTACATCTTTTTGAATACTAAACCTGCAGAATTTCTCATACATCGTAAAAATCGCGGAAATGTTCTTATTAA] [+] EMBL BE844482 [TGACTTCTTCAGAAATTGAAGTGGAGAATTTGAGTGAGAAAAATGCAGAAGAATCTGCAATTTTAGAAGTAAGCACAATAGCAGTCGGTGGTGTTATTAAACAGGAGAATCGTGATGTTGATTTTCTTTCAAATTGTAGTACTTCCATCGAAGGTTCCGTGATAGCTTCACCCTCCATTGACAGTTTCTCTACTTTGCCAGAGCAAGAAATATCAGATTTTCAGATAGATTCTAAAGATTCTAGAGATTTACAAGTAAAAGTAGATAATCCTCAAAAGCATCTTGAAACTCTTGAAACTTATATTACTTTTCGTATAACAACAAAATCCACAAGACAAGAATTTGAAGAAGGAGAATATATTGTTAGAAGACGTTATAATGATTTTATTTGGTTAAGACAAAAATTAGTAGATTCATATCCTACACATATTATACCACCAATGCCTGGAAAACACACATTACTTGCTCAGTTAGATCGTTATTCCAAAGAAATTTATTATAGCACGCATGGAAATTATTACATATGTTTTCTTACCAGAGTTATAAATCATCCAATTCTTAGCTATGACAACAATTTGTACATCTTTTTGAATACTAAACCTGCAGAATTTCTCATACATCGTAAAAATCGCGGAAATGTTCTTATTAA] [+] EMBL BI503692 [ AATTTGAGTGAGAAAAATGCAGAAGAATCTGCAATTTTAGAAGTAAGCACAATAGCAGTCGGTGGTGTTATTAAACAGGAGAATCGTGATGTTGATTTTCTTTCAAATTGTAGTACTTCCATCGAAGGTTCCGTGATAGCTTCACCCTCCATTGACAGTTTCTCTACTTTGCCAGAGCAAGAAATATCAGATTTTCAGATAGATTCTAAAGATTCTAGAGATTTACAAGTAAAAGTAGATAATCCTCAAAAGCATCTTGAAACTCTTGAAACTTATATTACTTTTCGTATAACAACAAAATCCACAAGACAAGAATTTGAAGAAGGAGAATATATTGTTAGAAGACGTTATAATGATTTTATTTGGTTAAGACAAAAAAAAAA ] consensusID : consensus_625#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence [TTCTAAAATTGCAGATTCTTCTGCATTTTTCTCACTCAAATTCTCCACTTCAATTTCTGAAGAAGTCATCATCTTTAAATTGTCAAGTATAAAGAACTGTATCAGTACTGCGTCACATGCGCAACATTAGATAAAACATGAATATGATACGCACATTGATCATATTTCAAAAATTTTTAAAACTTTTAAATATAAATAATTTGTATAAATTAAACTAATTATTAAGTTAAATTACAATTCGTGAGTATTATAATTTACCCGCCTTTTTTATTAAACTTTTTAAAAAAAGTTGTATATTGTTCTCTGCAATTGAAGAACTATAATTCGATCTTTGGTTGTTATAAAGCGTAGTTGAAAAAAGTTTATGATATTCTGGAATAAAGAGCAAATAATTTGCACCCGTGGAAACCGTATCTCGGGATACAATCGAAAGTTTTTCCCGCGATTAAAACTTAGNAACTTTCGCGTGGACTTCGCGAAAGTATGGAGTGGCAAGAAGAGGATGAATACAGTTNNATTTTTTCCAAGAGATATTCCATTATGATGGCGGAAGAATCCTCATTACCAATTATTTATTACCGATCACAAAAT] [+] EMBL BI508487 [TTCTAAAATTGCAGATTCTTCTGCATTTTTCTCACTCAAATTCTCCACTTCAATTTCTGAAGAAGTCATCATCTTTAAATTGTCAAGTATAAAGAACTGTATCAGTACTGCGTCACATGCGCAACATTAGATAAAACATGAATATGATACGCACATTGATCATATTTCAAAAATTTTTAAAACTTTTAAATATAAATAATTTGTATAAATTAAACTAATTATTAAGTTAAATTACAATTCGTGAGTATTATAATTTACCCGCCTTTTTTATTAAACTTTTTAAAAAAAGTTGTATATTGTTCTCTGCAATTGAAGAACTATAATTCGATCTTTGGTTGTTATAAAGCGTAGTTGAAAAAAGTTTATGATATTCTGGAATAAAGAGCAAATAATTTGCACCCGTGGAAACCGTATCTCGGGATACAATCGAAAGTTTTTCCCGCGATTAAAACTTAGNAACTTTCGCGTGGACTTCGCGAAAGTATGGAGTGGCAAGAAGAGGATGAATACAGTTNNATTTTTTCCAAGAGATATTCCATTATGATGGCGGAAGAATCCTCATTACCAATTATTTATTACCGATCACAAAAT] consensusID : consensus_625#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence [GCTTCACCCTCCATTGACAGTTTCTCTACTTTGCCAGAGCAAGAAATATCAGATTTTCAGATAGATTCTAAAGATTCTAGAGATTTACAAGTAAAAGTAGATAATCCTCAAAAGCATCTTGAAACTCTTGAAACTTATATTACTTTTCGTATAACAACAAAATCCACAAGACAAGAATTTGAAGAAGGAGAATATATTGTTAGAAGACGTTATAATGATTTTATTTGGTTAAGACAAAAATTAGTAGATTCATCATCCAATTCTTAGCTATGACAAAAATTTGTACATCTTTTTGACTACTAAACCTGCAGAATTTCTCATACATCGTAAAAATCGTGGAAATGTTCTTATTAAAATGACTGATTCTTTGCAAAATATAGCAAGTACATATACTATGAAACAACGCCATTTTGAATTCGAGCAAATTCGAGATTATTGTATAGCTCTTAATGAAAAATTAGCAACTATAGATAGG] [+] EMBL BI512150 [GCTTCACCCTCCATTGACAGTTTCTCTACTTTGCCAGAGCAAGAAATATCAGATTTTCAGATAGATTCTAAAGATTCTAGAGATTTACAAGTAAAAGTAGATAATCCTCAAAAGCATCTTGAAACTCTTGAAACTTATATTACTTTTCGTATAACAACAAAATCCACAAGACAAGAATTTGAAGAAGGAGAATATATTGTTAGAAGACGTTATAATGATTTTATTTGGTTAAGACAAAAATTAGTAGATTCATCATCCAATTCTTAGCTATGACAAAAATTTGTACATCTTTTTGACTACTAAACCTGCAGAATTTCTCATACATCGTAAAAATCGTGGAAATGTTCTTATTAAAATGACTGATTCTTTGCAAAATATAGCAAGTACATATACTATGAAACAACGCCATTTTGAATTCGAGCAAATTCGAGATTATTGTATAGCTCTTAATGAAAAATTAGCAACTATAGATAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_625#0 TGACTTCTTCAGAAATTGAAGTGGAGAATTTGAGTGAGAAAAATGCAGAAGAATCTGCAA 60 consensus_625#2 ------------------------------------------------------------ consensus_625#1 ------------------------------------------------------------ consensus_625#0 TTTTAGAAGTAAGCACAATAGCAG--TCGGTGGTGTTATTAAACAGGAGAATCGTGATGT 118 consensus_625#2 ------------------------------------------------------------ consensus_625#1 ----------TTCTAAAATTGCAGATTCTTCTGCATTTTTCTCACTCAAATTCTCCACTT 50 consensus_625#0 TGATTTTCTTTCAAATTGTAGTACTTCCATCGAAGGTTCCGTGATAGCTTCACCCTCCAT 178 consensus_625#2 ----------------------------------------------GCTTCACCCTCCAT 14 consensus_625#1 CAATTTCTGAAGAAGTCATCATCTTTAAATTGTCAAGTATAAAGAACTGTATCAGTACTG 110 * * * * consensus_625#0 TGACAGTTTCTCTACTTTGCCAGAGCAAGAAATATCAGATTTTCA--GAT-AGATTCTAA 235 consensus_625#2 TGACAGTTTCTCTACTTTGCCAGAGCAAGAAATATCAGATTTTCA--GAT-AGATTCTAA 71 consensus_625#1 CGTCACATGCGCAACATTAGATAAAACATGAATATGATACGCACATTGATCATATTTCAA 170 * ** * * * ** ** * * ***** * * ** *** * *** ** consensus_625#0 AGATTCTAGAGATTTACAAGTAAAAGTAGATAATCC---TCAAAAGCATCTTGAAACTC- 291 consensus_625#2 AGATTCTAGAGATTTACAAGTAAAAGTAGATAATCC---TCAAAAGCATCTTGAAACTC- 127 consensus_625#1 AAATTTTTAAAACTTTTAAATATAAATAATTTGTATAAATTAAACTAATTATTAAGTTAA 230 * *** * * * ** ** ** ** ** * * * *** ** * ** * consensus_625#0 -TTGAAACTTATATTACTTTTCGTATAACAACAAAATCCACAAGACAAGAATTTGAAGAA 350 consensus_625#2 -TTGAAACTTATATTACTTTTCGTATAACAACAAAATCCACAAGACAAGAATTTGAAGAA 186 consensus_625#1 ATTACAATTCGTGAGTATTATAATTTACCCGCCTTTTTTATTAAACT----TTTTAAAAA 286 ** ** * * ** * * ** * * * * * ** *** ** ** consensus_625#0 GGAGAATATATTGTTAGAAGACGTTATA-----ATGATTTTAT--TTGGTTAAGACAAAA 403 consensus_625#2 GGAGAATATATTGTTAGAAGACGTTATA-----ATGATTTTAT--TTGGTTAAGACAAAA 239 consensus_625#1 AAGTTGTATATTGTTCTCTGCAATTGAAGAACTATAATTCGATCTTTGGTTGTTATAAAG 346 ********* * ** * ** *** ** ****** * *** consensus_625#0 AAAAGAAGATTCATATCCTACACATATTATACCACCAATGCCTGGAAAACACACATTACT 463 consensus_625#2 ATTAGTAGATTCATCATCCA-----ATTCT--TAGCTATGACAAAAATTTGTACAT--CT 290 consensus_625#1 CGTAGTTGAAAAA-AGTTTATG-ATATTCTG-GAATAAAGAGCAAATAATTTGCACCCGT 403 ** ** * * *** * * * * * ** * consensus_625#0 TGCTCAGTTAGATCGTTATTCCAAAGAAATTTATTATAGCACGCATGGAAATTATTACAT 523 consensus_625#2 T------TTTGACTACTAAACCTGCAGAATTTCTCATA-----CATCGTAAAAATCGTGG 339 consensus_625#1 GGAAACCGTATCTCGGGATACAATCGAAAGTTTTTCC------CGCGATTAAAACT-TAG 456 * * * ** ** * * * * consensus_625#0 ATGTTTTCTTACCAGAGTTATAAATCATC--CAATTCTTAGCTATGACA-ACAATTTGTA 580 consensus_625#2 AAATGTTCTTATTAAAATGACTGATTCTTTGCAAAATATAGCAAGTACATATACTATGAA 399 consensus_625#1 NAACTTTCGCGTGGACTTCGCGAAAGTATGGAGTGGCAAGAAGAGGATGAATACAGTTNN 516 *** * * * * * * * consensus_625#0 ----CATCTTTTTGAATACTA--AACCTGCAGAATTTCTCATACATCGTAAAAATCGCGG 634 consensus_625#2 ACAACGCCATTTTGAATTCGAGCAAATTCGAGATTATTGTATAGCTCTTAATGAAAAATT 459 consensus_625#1 -----ATTTTTTCCAAGA-GATATTCCATTATGATGGCGGAAGAATCCTCATTACCAATT 570 *** ** * * * * ** * * * consensus_625#0 AAATGTTCTTATTAA------ 649 consensus_625#2 AGCAACTATAGATAGG----- 475 consensus_625#1 ATTTATTACCGATCACAAAAT 591 * * * |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |