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Apis mellifera
cluster # 625 cluster # 625       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_625#0 length = 649 sequences # 2  
consensus_625#1 length = 591 sequences # 1  
consensus_625#2 length = 475 sequences # 1  

consensusID : consensus_625#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 649
fasta sequence
                              [TGACTTCTTCAGAAATTGAAGTGGAGAATTTGAGTGAGAAAAATGCAGAAGAATCTGCAATTTTAGAAGTAAGCACAATAGCAGTCGGTGGTGTTATTAAACAGGAGAATCGTGATGTTGATTTTCTTTCAAATTGTAGTACTTCCATCGAAGGTTCCGTGATAGCTTCACCCTCCATTGACAGTTTCTCTACTTTGCCAGAGCAAGAAATATCAGATTTTCAGATAGATTCTAAAGATTCTAGAGATTTACAAGTAAAAGTAGATAATCCTCAAAAGCATCTTGAAACTCTTGAAACTTATATTACTTTTCGTATAACAACAAAATCCACAAGACAAGAATTTGAAGAAGGAGAATATATTGTTAGAAGACGTTATAATGATTTTATTTGGTTAAGACAAAAAAAAGAAGATTCATATCCTACACATATTATACCACCAATGCCTGGAAAACACACATTACTTGCTCAGTTAGATCGTTATTCCAAAGAAATTTATTATAGCACGCATGGAAATTATTACATATGTTTTCTTACCAGAGTTATAAATCATCCAATTCTTAGCTATGACAACAATTTGTACATCTTTTTGAATACTAAACCTGCAGAATTTCTCATACATCGTAAAAATCGCGGAAATGTTCTTATTAA]

[+] EMBL BE844482             [TGACTTCTTCAGAAATTGAAGTGGAGAATTTGAGTGAGAAAAATGCAGAAGAATCTGCAATTTTAGAAGTAAGCACAATAGCAGTCGGTGGTGTTATTAAACAGGAGAATCGTGATGTTGATTTTCTTTCAAATTGTAGTACTTCCATCGAAGGTTCCGTGATAGCTTCACCCTCCATTGACAGTTTCTCTACTTTGCCAGAGCAAGAAATATCAGATTTTCAGATAGATTCTAAAGATTCTAGAGATTTACAAGTAAAAGTAGATAATCCTCAAAAGCATCTTGAAACTCTTGAAACTTATATTACTTTTCGTATAACAACAAAATCCACAAGACAAGAATTTGAAGAAGGAGAATATATTGTTAGAAGACGTTATAATGATTTTATTTGGTTAAGACAAAAATTAGTAGATTCATATCCTACACATATTATACCACCAATGCCTGGAAAACACACATTACTTGCTCAGTTAGATCGTTATTCCAAAGAAATTTATTATAGCACGCATGGAAATTATTACATATGTTTTCTTACCAGAGTTATAAATCATCCAATTCTTAGCTATGACAACAATTTGTACATCTTTTTGAATACTAAACCTGCAGAATTTCTCATACATCGTAAAAATCGCGGAAATGTTCTTATTAA]
[+] EMBL BI503692             [                          AATTTGAGTGAGAAAAATGCAGAAGAATCTGCAATTTTAGAAGTAAGCACAATAGCAGTCGGTGGTGTTATTAAACAGGAGAATCGTGATGTTGATTTTCTTTCAAATTGTAGTACTTCCATCGAAGGTTCCGTGATAGCTTCACCCTCCATTGACAGTTTCTCTACTTTGCCAGAGCAAGAAATATCAGATTTTCAGATAGATTCTAAAGATTCTAGAGATTTACAAGTAAAAGTAGATAATCCTCAAAAGCATCTTGAAACTCTTGAAACTTATATTACTTTTCGTATAACAACAAAATCCACAAGACAAGAATTTGAAGAAGGAGAATATATTGTTAGAAGACGTTATAATGATTTTATTTGGTTAAGACAAAAAAAAAA                                                                                                                                                                                                                                                ]


>consensus_625#0 TGACTTCTTCAGAAATTGAAGTGGAGAATTTGAGTGAGAAAAATGCAGAAGAATCTGCAA TTTTAGAAGTAAGCACAATAGCAGTCGGTGGTGTTATTAAACAGGAGAATCGTGATGTTG ATTTTCTTTCAAATTGTAGTACTTCCATCGAAGGTTCCGTGATAGCTTCACCCTCCATTG ACAGTTTCTCTACTTTGCCAGAGCAAGAAATATCAGATTTTCAGATAGATTCTAAAGATT CTAGAGATTTACAAGTAAAAGTAGATAATCCTCAAAAGCATCTTGAAACTCTTGAAACTT ATATTACTTTTCGTATAACAACAAAATCCACAAGACAAGAATTTGAAGAAGGAGAATATA TTGTTAGAAGACGTTATAATGATTTTATTTGGTTAAGACAAAAAAAAGAAGATTCATATC CTACACATATTATACCACCAATGCCTGGAAAACACACATTACTTGCTCAGTTAGATCGTT ATTCCAAAGAAATTTATTATAGCACGCATGGAAATTATTACATATGTTTTCTTACCAGAG TTATAAATCATCCAATTCTTAGCTATGACAACAATTTGTACATCTTTTTGAATACTAAAC CTGCAGAATTTCTCATACATCGTAAAAATCGCGGAAATGTTCTTATTAA



consensusID : consensus_625#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 591
fasta sequence
                              [TTCTAAAATTGCAGATTCTTCTGCATTTTTCTCACTCAAATTCTCCACTTCAATTTCTGAAGAAGTCATCATCTTTAAATTGTCAAGTATAAAGAACTGTATCAGTACTGCGTCACATGCGCAACATTAGATAAAACATGAATATGATACGCACATTGATCATATTTCAAAAATTTTTAAAACTTTTAAATATAAATAATTTGTATAAATTAAACTAATTATTAAGTTAAATTACAATTCGTGAGTATTATAATTTACCCGCCTTTTTTATTAAACTTTTTAAAAAAAGTTGTATATTGTTCTCTGCAATTGAAGAACTATAATTCGATCTTTGGTTGTTATAAAGCGTAGTTGAAAAAAGTTTATGATATTCTGGAATAAAGAGCAAATAATTTGCACCCGTGGAAACCGTATCTCGGGATACAATCGAAAGTTTTTCCCGCGATTAAAACTTAGNAACTTTCGCGTGGACTTCGCGAAAGTATGGAGTGGCAAGAAGAGGATGAATACAGTTNNATTTTTTCCAAGAGATATTCCATTATGATGGCGGAAGAATCCTCATTACCAATTATTTATTACCGATCACAAAAT]

[+] EMBL BI508487             [TTCTAAAATTGCAGATTCTTCTGCATTTTTCTCACTCAAATTCTCCACTTCAATTTCTGAAGAAGTCATCATCTTTAAATTGTCAAGTATAAAGAACTGTATCAGTACTGCGTCACATGCGCAACATTAGATAAAACATGAATATGATACGCACATTGATCATATTTCAAAAATTTTTAAAACTTTTAAATATAAATAATTTGTATAAATTAAACTAATTATTAAGTTAAATTACAATTCGTGAGTATTATAATTTACCCGCCTTTTTTATTAAACTTTTTAAAAAAAGTTGTATATTGTTCTCTGCAATTGAAGAACTATAATTCGATCTTTGGTTGTTATAAAGCGTAGTTGAAAAAAGTTTATGATATTCTGGAATAAAGAGCAAATAATTTGCACCCGTGGAAACCGTATCTCGGGATACAATCGAAAGTTTTTCCCGCGATTAAAACTTAGNAACTTTCGCGTGGACTTCGCGAAAGTATGGAGTGGCAAGAAGAGGATGAATACAGTTNNATTTTTTCCAAGAGATATTCCATTATGATGGCGGAAGAATCCTCATTACCAATTATTTATTACCGATCACAAAAT]


>consensus_625#1 TTCTAAAATTGCAGATTCTTCTGCATTTTTCTCACTCAAATTCTCCACTTCAATTTCTGA AGAAGTCATCATCTTTAAATTGTCAAGTATAAAGAACTGTATCAGTACTGCGTCACATGC GCAACATTAGATAAAACATGAATATGATACGCACATTGATCATATTTCAAAAATTTTTAA AACTTTTAAATATAAATAATTTGTATAAATTAAACTAATTATTAAGTTAAATTACAATTC GTGAGTATTATAATTTACCCGCCTTTTTTATTAAACTTTTTAAAAAAAGTTGTATATTGT TCTCTGCAATTGAAGAACTATAATTCGATCTTTGGTTGTTATAAAGCGTAGTTGAAAAAA GTTTATGATATTCTGGAATAAAGAGCAAATAATTTGCACCCGTGGAAACCGTATCTCGGG ATACAATCGAAAGTTTTTCCCGCGATTAAAACTTAGNAACTTTCGCGTGGACTTCGCGAA AGTATGGAGTGGCAAGAAGAGGATGAATACAGTTNNATTTTTTCCAAGAGATATTCCATT ATGATGGCGGAAGAATCCTCATTACCAATTATTTATTACCGATCACAAAAT



consensusID : consensus_625#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 475
fasta sequence
                              [GCTTCACCCTCCATTGACAGTTTCTCTACTTTGCCAGAGCAAGAAATATCAGATTTTCAGATAGATTCTAAAGATTCTAGAGATTTACAAGTAAAAGTAGATAATCCTCAAAAGCATCTTGAAACTCTTGAAACTTATATTACTTTTCGTATAACAACAAAATCCACAAGACAAGAATTTGAAGAAGGAGAATATATTGTTAGAAGACGTTATAATGATTTTATTTGGTTAAGACAAAAATTAGTAGATTCATCATCCAATTCTTAGCTATGACAAAAATTTGTACATCTTTTTGACTACTAAACCTGCAGAATTTCTCATACATCGTAAAAATCGTGGAAATGTTCTTATTAAAATGACTGATTCTTTGCAAAATATAGCAAGTACATATACTATGAAACAACGCCATTTTGAATTCGAGCAAATTCGAGATTATTGTATAGCTCTTAATGAAAAATTAGCAACTATAGATAGG]

[+] EMBL BI512150             [GCTTCACCCTCCATTGACAGTTTCTCTACTTTGCCAGAGCAAGAAATATCAGATTTTCAGATAGATTCTAAAGATTCTAGAGATTTACAAGTAAAAGTAGATAATCCTCAAAAGCATCTTGAAACTCTTGAAACTTATATTACTTTTCGTATAACAACAAAATCCACAAGACAAGAATTTGAAGAAGGAGAATATATTGTTAGAAGACGTTATAATGATTTTATTTGGTTAAGACAAAAATTAGTAGATTCATCATCCAATTCTTAGCTATGACAAAAATTTGTACATCTTTTTGACTACTAAACCTGCAGAATTTCTCATACATCGTAAAAATCGTGGAAATGTTCTTATTAAAATGACTGATTCTTTGCAAAATATAGCAAGTACATATACTATGAAACAACGCCATTTTGAATTCGAGCAAATTCGAGATTATTGTATAGCTCTTAATGAAAAATTAGCAACTATAGATAGG]


>consensus_625#2 GCTTCACCCTCCATTGACAGTTTCTCTACTTTGCCAGAGCAAGAAATATCAGATTTTCAG ATAGATTCTAAAGATTCTAGAGATTTACAAGTAAAAGTAGATAATCCTCAAAAGCATCTT GAAACTCTTGAAACTTATATTACTTTTCGTATAACAACAAAATCCACAAGACAAGAATTT GAAGAAGGAGAATATATTGTTAGAAGACGTTATAATGATTTTATTTGGTTAAGACAAAAA TTAGTAGATTCATCATCCAATTCTTAGCTATGACAAAAATTTGTACATCTTTTTGACTAC TAAACCTGCAGAATTTCTCATACATCGTAAAAATCGTGGAAATGTTCTTATTAAAATGAC TGATTCTTTGCAAAATATAGCAAGTACATATACTATGAAACAACGCCATTTTGAATTCGA GCAAATTCGAGATTATTGTATAGCTCTTAATGAAAAATTAGCAACTATAGATAGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_625#0      TGACTTCTTCAGAAATTGAAGTGGAGAATTTGAGTGAGAAAAATGCAGAAGAATCTGCAA 60
consensus_625#2      ------------------------------------------------------------
consensus_625#1      ------------------------------------------------------------
                                                                                 

consensus_625#0      TTTTAGAAGTAAGCACAATAGCAG--TCGGTGGTGTTATTAAACAGGAGAATCGTGATGT 118
consensus_625#2      ------------------------------------------------------------
consensus_625#1      ----------TTCTAAAATTGCAGATTCTTCTGCATTTTTCTCACTCAAATTCTCCACTT 50
                                                                                 

consensus_625#0      TGATTTTCTTTCAAATTGTAGTACTTCCATCGAAGGTTCCGTGATAGCTTCACCCTCCAT 178
consensus_625#2      ----------------------------------------------GCTTCACCCTCCAT 14
consensus_625#1      CAATTTCTGAAGAAGTCATCATCTTTAAATTGTCAAGTATAAAGAACTGTATCAGTACTG 110
                                                                      *  *  * *  

consensus_625#0      TGACAGTTTCTCTACTTTGCCAGAGCAAGAAATATCAGATTTTCA--GAT-AGATTCTAA 235
consensus_625#2      TGACAGTTTCTCTACTTTGCCAGAGCAAGAAATATCAGATTTTCA--GAT-AGATTCTAA 71
consensus_625#1      CGTCACATGCGCAACATTAGATAAAACATGAATATGATACGCACATTGATCATATTTCAA 170
                      * **  * * * ** **     *   *  ***** * *    **  *** * ***  **

consensus_625#0      AGATTCTAGAGATTTACAAGTAAAAGTAGATAATCC---TCAAAAGCATCTTGAAACTC- 291
consensus_625#2      AGATTCTAGAGATTTACAAGTAAAAGTAGATAATCC---TCAAAAGCATCTTGAAACTC- 127
consensus_625#1      AAATTTTTAAAACTTTTAAATATAAATAATTTGTATAAATTAAACTAATTATTAAGTTAA 230
                     * *** *  * * **  ** ** ** **  *  *     * ***   **  * **  *  

consensus_625#0      -TTGAAACTTATATTACTTTTCGTATAACAACAAAATCCACAAGACAAGAATTTGAAGAA 350
consensus_625#2      -TTGAAACTTATATTACTTTTCGTATAACAACAAAATCCACAAGACAAGAATTTGAAGAA 186
consensus_625#1      ATTACAATTCGTGAGTATTATAATTTACCCGCCTTTTTTATTAAACT----TTTTAAAAA 286
                      **  ** *  *     ** *  * ** *  *    *  *  * **     *** ** **

consensus_625#0      GGAGAATATATTGTTAGAAGACGTTATA-----ATGATTTTAT--TTGGTTAAGACAAAA 403
consensus_625#2      GGAGAATATATTGTTAGAAGACGTTATA-----ATGATTTTAT--TTGGTTAAGACAAAA 239
consensus_625#1      AAGTTGTATATTGTTCTCTGCAATTGAAGAACTATAATTCGATCTTTGGTTGTTATAAAG 346
                           *********    *   **  *     ** ***  **  ******   * *** 

consensus_625#0      AAAAGAAGATTCATATCCTACACATATTATACCACCAATGCCTGGAAAACACACATTACT 463
consensus_625#2      ATTAGTAGATTCATCATCCA-----ATTCT--TAGCTATGACAAAAATTTGTACAT--CT 290
consensus_625#1      CGTAGTTGAAAAA-AGTTTATG-ATATTCTG-GAATAAAGAGCAAATAATTTGCACCCGT 403
                        **  **   *      *     *** *   *   * *     *       **    *

consensus_625#0      TGCTCAGTTAGATCGTTATTCCAAAGAAATTTATTATAGCACGCATGGAAATTATTACAT 523
consensus_625#2      T------TTTGACTACTAAACCTGCAGAATTTCTCATA-----CATCGTAAAAATCGTGG 339
consensus_625#1      GGAAACCGTATCTCGGGATACAATCGAAAGTTTTTCC------CGCGATTAAAACT-TAG 456
                             *        *  *      ** ** *         *      *  *      

consensus_625#0      ATGTTTTCTTACCAGAGTTATAAATCATC--CAATTCTTAGCTATGACA-ACAATTTGTA 580
consensus_625#2      AAATGTTCTTATTAAAATGACTGATTCTTTGCAAAATATAGCAAGTACATATACTATGAA 399
consensus_625#1      NAACTTTCGCGTGGACTTCGCGAAAGTATGGAGTGGCAAGAAGAGGATGAATACAGTTNN 516
                          ***         *     *                   *  *   * *   *   

consensus_625#0      ----CATCTTTTTGAATACTA--AACCTGCAGAATTTCTCATACATCGTAAAAATCGCGG 634
consensus_625#2      ACAACGCCATTTTGAATTCGAGCAAATTCGAGATTATTGTATAGCTCTTAATGAAAAATT 459
consensus_625#1      -----ATTTTTTCCAAGA-GATATTCCATTATGATGGCGGAAGAATCCTCATTACCAATT 570
                              ***  **    *         *   *     *    ** * *  *      

consensus_625#0      AAATGTTCTTATTAA------ 649
consensus_625#2      AGCAACTATAGATAGG----- 475
consensus_625#1      ATTTATTACCGATCACAAAAT 591
                     *     *     *        




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)