These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_633#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 727 fasta sequence [GTTGAAGAAAACTATCAAGAATCTGAGGAAAGTTTGCAGCAAGAAGAACGACACCCCCAAAGAGCTCCTGGACGGCCAATTCAGAGGCGAATTCCCGCAGGACGAGAGGCTAATGTGCTACATGAAATGCATCATGATCGCGACTAAAGCGATGAAAAACGACGTTATCCTGTGGGATTTTTTCGTGAAGAATGCTCGCATGATATTGCTCGAGGAATACATTCCGCGCGTTGAGAGCGTAGTTGAAACGTGCAAGAAGGAAGTGACATCTACGGAGGGATGCGAGGTTGCGTGGCAATTTGGCAAATGCATCTACGAAAACGATAAGGAGCTCTACTTAGCTCCGTGAACTTCCAATAGCGAAACGATCGAAGAAGCAAAAGAAATTTCACACCTATACACATTGTTACAAGGATCGAGAAACAGCTATGATGGTGTATAGAAATACTGGAAGGGCGAAACAACGTATGTAGAAGAGTCTAAAAAGAAAATCTCACGAACGATTTTATTTTATTCGATAATATTCTCGATCAATGTTTCGATTTTTGGGAAACTTTATCTTGAAATTTCCACGCAACGCAAAATTCGGTTTATCTAAGAAATTAATTCCGACGAATTATTTAAAATTGATTATAAATATTACATTGTATTAATCTATCGTAACATTTCCTTCC--CGA-A-TTCTATTACCTTGTAATCTTCCGCTATTATACTTGTTTATCACGAAAAA] [+] EMBL AF339140 [GTTGAAGAAAACTATCAAGAATCTGAGGAAAGTTTGCAGCAAGAAGAACGACACCCCCAAAGAGCTCCTGGACGGCCAATTCAGAGGCGAATTCCCGCAGGACGAGAGGCTAATGTGCTACATGAAATGCATCATGATCGCGACTAAAGCGATGAAAAACGACGTTATCCTGTGGGATTTTTTCGTGAAGAATGCTCGCATGATATTGCTCGAGGAATACATTCCGCGCGTTGAGAGCGTAGTTGAAACGTGCAAGAAGGAAGTGACATCTACGGAGGGATGCGAGGTTGCGTGGCAATTTGGCAAATGCATCTACGAAAACGATAAGGAGCTCTACTTAGCTCCGTGAACTTCCAATAGCGAAACGATCGAAGAAGCAAAAGAAATTTCACACCTATACACATTGTTACAAGGATCGAGAAACAGCTATGATGGTGTATAGAAATACTGGAAGGGCGAAACAACGTATGTAGAAGAGTCTAAAAAGAAAATCTCACGAACGATTTTATTTTATTCGATAATATTCTCGATCAAT GATTTTTGCAAAACTTTATCTTGAAATTTCCACGCAACGCAAAATTCGGTTTATCTAAGAAATTAATTCCGACGAATTATTTAAAATT ATTATAAATATTACATTGTATTAATCTATCGTAACATTTCCTTCCTTCGATATTTCTATTACCTTGTAATCTTCCGCTATTATACTTGTTTATCCCGAAAAA] [+] EMBL BE844389 [ AGAAATACTGGAAGAGCGAAACAACGTATGTAGAAGAATCTAAAAAGAAAATCTCACGAACGATTTTATTTTATTCGATAATATTCTCGATCTTTGTTTCGATTTTTGGGAAACTTTATCTTAAAATTTCCACGCAACGCAAAATTCGTTTTATCTAAGAAATTAATTCCGACGAATTATTTAAAATTGATTATAAATATTACATTGTATTAATCTATCGTAACATTTCCTTCC TTCTATTACCTTGTAATCTTCCGCTATTATACTTGTTTATCACGCAA ] consensusID : consensus_633#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 662 fasta sequence [TGTCCGCGTTAGACATTGCCAAGTTAGACACGTTCGAAAGAAGGAAACGGAATGAAGGGGCTCGGCGTCTCCCTGCTGGTTGCGTTGCTGCTCGTCCTATTAGCGATCGAGGATACCATGAGCAAAAAGATGACGATCGAGGAAGCGAAGAAAACTATCAAGAATTTGAGGAAAGTTTGCAGCAAGAAGAACGACACCCCCAAAGAGCTCCTGGACGGCCAATTCAGAGGCGAATTCCCGCAGGACGAGAGGCTAATGTGCTACATGAAATGCATCATGATCGCGACTAAAGCGATGAAAAACGACGTTATCTTGTGGGATTTTTTCGTGAAGAATGCTCGCATGATATTGCTCGAGGAATACATTCCGCGCGTTGAGAGCGTAGTTGAAACGTGCAAGAAGGAAGTGACATCTACGGAGGGATGCGAGGTTGCGTGGCAATTTGGCAAGTGCATCTACGAAAACGACAAGGAGGTGATTTTTAAATACGATTACGCCGAAAATAATACTTTGGCTCTATTTAGCGCCATGAACGATCTTTCGATGGAGAGCTCGCGATATTATCGAGGAAGCCAAGAGAAATTTCTACACGCCTGCGCTTCGCCGTTATCTTGGCCATCACGTTCGTAACCGTGGAAAAGCAGTGTGCAGAAATACCAGGA] [+] EMBL BE844326 [TGTCCGCGTTAGACATTGCCAAGTTAGACACGTTCGAAAGAAGGAAACGGAATGAAGGGGCTCGGCGTCTCCCTGCTGGTTGCGTTGCTGCTCGTCCTATTAGCGATCGAGGATACCATGAGCAAAAAGATGACGATCGAGGAAGCGAAGAAAACTATCAAGAATTTGAGGAAAGTTTGCAGCAAGAAGAACGACACCCCCAAAGAGCTCCTGGACGGCCAATTCAGAGGCGAATTCCCGCAGGACGAGAGGCTAATGTGCTACATGAAATGCATCATGATCGCGACTAAAGCGATGAAAAACGACGTTATCTTGTGGGATTTTTTCGTGAAGAATGCTCGCATGATATTGCTCGAGGAATACATTCCGCGCGTTGAGAGCGTAGTTGAAACGTGCAAGAAGGAAGTGACATCTACGGAGGGATGCGAGGTTGCGTGGCAATTTGGCAAGTGCATCTACGAAAACGACAAGGAGGTGATTTTTAAATACGATTACGCCGAAAATAATACTTTGGCTCTATTTAGCGCCATGAACGATCTTTCGATGGAGAGCTCGCGATATTATCGAGGAAGCCAAGAGAAATTTCTACACGCCTGCGCTTCGCCGTTATCTTGGCCATCACGTTCGTAACCGTGGAAAAGCAGTGTGCAGAAATACCAGGA] consensusID : consensus_633#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 519 fasta sequence [ACACGTTCGAAAGAAGGAAACGGAATGAAGGGGCTCGGCGTCTCCCTGCTGGTTGCGTTGCTGCTCGTCCTATTAGCGATCGAGGATACCATGAGCAAAAAGATGACGATCGAGGAAGCGAAGAAAACTATCAAGAATCTGAGGAAAGTTTGCAGCAAGAAGAACGACACCCCCAAAGAGCTTCTAGACGGCCAATTCAGGGGCGAATTCCCGCAGGACGAGAGGCTAATGTGCTACATGAAATGCATCATGATCGCGACTAAAGCGATGAAAAACGACGTTATCCTGTGGGATTTTTTCGTGAAGAATGCTCGCATGATATTGCTCGAGGAATACATTCCGCGCGTTGAGAGCGTAGTTGAAACGTGCAAGAAGGAAGTGACATCTACGGAGGGATGCGAGGTTGCTTGGCAATTTGGCAAGTGCATCTACGAAAACGACAAGGAGCTCTATTTAGCGCCATGAACGATCTTTCGATGGAGAGCTCGCGATATTATCGAGGAAGCAAGAGAAATTTCT] [+] EMBL AF393496 [ACACGTTCGAAAGAAGGAAACGGAATGAAGGGGCTCGGCGTCTCCCTGCTGGTTGCGTTGCTGCTCGTCCTATTAGCGATCGAGGATACCATGAGCAAAAAGATGACGATCGAGGAAGCGAAGAAAACTATCAAGAATCTGAGGAAAGTTTGCAGCAAGAAGAACGACACCCCCAAAGAGCTTCTAGACGGCCAATTCAGGGGCGAATTCCCGCAGGACGAGAGGCTAATGTGCTACATGAAATGCATCATGATCGCGACTAAAGCGATGAAAAACGACGTTATCCTGTGGGATTTTTTCGTGAAGAATGCTCGCATGATATTGCTCGAGGAATACATTCCGCGCGTTGAGAGCGTAGTTGAAACGTGCAAGAAGGAAGTGACATCTACGGAGGGATGCGAGGTTGCTTGGCAATTTGGCAAGTGCATCTACGAAAACGACAAGGAGCTCTATTTAGCGCCATGAACGATCTTTCGATGGAGAGCTCGCGATATTATCGAGGAAGCAAGAGAAATTTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_633#1 TGTCCGCGTTAGACATTGCCAAGTTAGACACGTTCGAAAGAAGGAAACGGAATGAAGGGG 60 consensus_633#2 ---------------------------ACACGTTCGAAAGAAGGAAACGGAATGAAGGGG 33 consensus_633#0 ------------------------------------------------------------ consensus_633#1 CTCGGCGTCTCCCTGCTGGTTGCGTTGCTGCTCGTCCTATTAGCGATCGAGGATACCATG 120 consensus_633#2 CTCGGCGTCTCCCTGCTGGTTGCGTTGCTGCTCGTCCTATTAGCGATCGAGGATACCATG 93 consensus_633#0 ------------------------------------------------------------ consensus_633#1 AGCAAAAAGATGACGATCGAGGAAGCGAAGAAAACTATCAAGAATTTGAGGAAAGTTTGC 180 consensus_633#2 AGCAAAAAGATGACGATCGAGGAAGCGAAGAAAACTATCAAGAATCTGAGGAAAGTTTGC 153 consensus_633#0 -----------------------GTTGAAGAAAACTATCAAGAATCTGAGGAAAGTTTGC 37 ******************* ************** consensus_633#1 AGCAAGAAGAACGACACCCCCAAAGAGCTCCTGGACGGCCAATTCAGAGGCGAATTCCCG 240 consensus_633#2 AGCAAGAAGAACGACACCCCCAAAGAGCTTCTAGACGGCCAATTCAGGGGCGAATTCCCG 213 consensus_633#0 AGCAAGAAGAACGACACCCCCAAAGAGCTCCTGGACGGCCAATTCAGAGGCGAATTCCCG 97 ***************************** ** ************** ************ consensus_633#1 CAGGACGAGAGGCTAATGTGCTACATGAAATGCATCATGATCGCGACTAAAGCGATGAAA 300 consensus_633#2 CAGGACGAGAGGCTAATGTGCTACATGAAATGCATCATGATCGCGACTAAAGCGATGAAA 273 consensus_633#0 CAGGACGAGAGGCTAATGTGCTACATGAAATGCATCATGATCGCGACTAAAGCGATGAAA 157 ************************************************************ consensus_633#1 AACGACGTTATCTTGTGGGATTTTTTCGTGAAGAATGCTCGCATGATATTGCTCGAGGAA 360 consensus_633#2 AACGACGTTATCCTGTGGGATTTTTTCGTGAAGAATGCTCGCATGATATTGCTCGAGGAA 333 consensus_633#0 AACGACGTTATCCTGTGGGATTTTTTCGTGAAGAATGCTCGCATGATATTGCTCGAGGAA 217 ************ *********************************************** consensus_633#1 TACATTCCGCGCGTTGAGAGCGTAGTTGAAACGTGCAAGAAGGAAGTGACATCTACGGAG 420 consensus_633#2 TACATTCCGCGCGTTGAGAGCGTAGTTGAAACGTGCAAGAAGGAAGTGACATCTACGGAG 393 consensus_633#0 TACATTCCGCGCGTTGAGAGCGTAGTTGAAACGTGCAAGAAGGAAGTGACATCTACGGAG 277 ************************************************************ consensus_633#1 GGATGCGAGGTTGCGTGGCAATTTGGCAAGTGCATCTACGAAAACGACAAGGAG------ 474 consensus_633#2 GGATGCGAGGTTGCTTGGCAATTTGGCAAGTGCATCTACGAAAACGACAAGGAG------ 447 consensus_633#0 GGATGCGAGGTTGCGTGGCAATTTGGCAAATGCATCTACGAAAACGATAAGGAGCTCTAC 337 ************** ************** ***************** ****** consensus_633#1 --------GTGATTTTTAAATACGATTACGC---------CGAAAATAATACTTTGGCTC 517 consensus_633#2 ---------------------------------------------------------CTC 450 consensus_633#0 TTAGCTCCGTGAACTTCCAATAGCGAAACGATCGAAGAAGCAAAAGAAATTTCACACCTA 397 ** consensus_633#1 TATTTAGCGCCATGA-------------------ACGATCTTTCGA-----TGGAGAGCT 553 consensus_633#2 TATTTAGCGCCATGA-------------------ACGATCTTTCGA-----TGGAGAGCT 486 consensus_633#0 TACACATTGTTACAAGGATCGAGAAACAGCTATGATGGTGTATAGAAATACTGGAAGGGC 457 ** * * * * * * * * * ** **** * consensus_633#1 CG--CGATAT-TATCGAGGAAGCC-AAGAGAAATTTCTAC--ACGCCTGCGCTTCGCC-- 605 consensus_633#2 CG--CGATAT-TATCGAGGAAGC--AAGAGAAATTTCT---------------------- 519 consensus_633#0 GAAACAACGTATGTAGAAGAGTCTAAAAAGAAAATCTCACGAACGATTTTATTTTATTCG 517 * * * * * ** ** * ** ***** * consensus_633#1 GTTATCTTGGCCATCACGTTCGTAACCGTGGAAAAGCAGTGTGCAGAAATACCAGGA--- 662 consensus_633#2 ------------------------------------------------------------ consensus_633#0 ATAATATTCTCGATCAATGTTTCGATTTTTGGGAAACTTTATCTTGAAATTTCCACGCAA 577 consensus_633#1 ------------------------------------------------------------ consensus_633#2 ------------------------------------------------------------ consensus_633#0 CGCAAAATTCGGTTTATCTAAGAAATTAATTCCGACGAATTATTTAAAATTGATTATAAA 637 consensus_633#1 ------------------------------------------------------------ consensus_633#2 ------------------------------------------------------------ consensus_633#0 TATTACATTGTATTAATCTATCGTAACATTTCCTTCCCGAATTCTATTACCTTGTAATCT 697 consensus_633#1 ------------------------------ consensus_633#2 ------------------------------ consensus_633#0 TCCGCTATTATACTTGTTTATCACGAAAAA 727 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |