These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_634#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 660 fasta sequence [GCCATGACGTTACAGCTTACATTAAGTCTAGATATAAAAAAAAAAAAAAAAAAAATGGAAGGAAATAGGAATGCTAATAAGAATCCAGTTGGAAAAAACAGACAATACTTATTACTATTGTAATTCAGTAGAACGAGAGTCGAGATAATCGAGCACGTAGCGAGGGGCATTAATCCAACCAGTTGCGACTAACGATCGTTTCAGTTATGATGTATCATTGTTCAAGGGTCGATGTAACAAGGTTATAGATGCAAATCGAGTTAATGATTTTTTAAAAATATTTTTTATTTCTTTTAGAAAAAGAAATTAAATTTTTTAAATTAATAGACATCGGGATATTTTATCGTTTGTTTATTAATTAAATAATATATAAAATTATACAAAATATTTTAACTTATATACATCGTATATATATATATATNNNTTTAAAATTTGATATTTTTTAAACATTTTATTTGCGTCTATAAATCTGGAGCGCACCCTATACATATGTTTACGTACATATCTTTTTGTTATGAACATATCTTCGCTGATTTTAACAGCTATAATCTCAGGCGTGAATTGGAGGAAACGGAAATCGAGGGACGTAACGTAGGACAGTACATTCTTCGAACGAATCGAATCTTCCGATTTCTCTACTACTCGTGAAAAACGGGTCGT] [+] EMBL BI515580 [GCCATGACGTTACAGCTTACATTAAGTCTAGATATAAAAAAAAAAAAAAAAAAAATGGAAGGAAATAGGAATGCTAATAAGAATCCAGTTGGAAAAAACAGACAATACTTATTACTATTGTAATTCAGTAGAACGAGAGTCGAGATAATCGAGCACGTAGCGAGGGGCATTAATCCAACCAGTTGCGACTAACGATCGTTTCAGTTATGATGTATCATTGTTCAAGGGTCGATGTAACAAGGTTATAGATGCAAATCGAGTTAATGATTTTTTAAAAATATTTTTTATTTCT ] [+] EMBL BI514304 [ CAGTTGCGACTAACGATCGTTTCNGTTATGATGTATCATTGTTCAAGGGTCGATGTAACAAGGTTATAGATGCAAATCGAGTTAATGATTTTTTAAAAATATTTTTTATTTCTTTTAGAAAAAGAAATTAAATTTTTTAAATTAATAGACATCGGGATATTTTATCGTTTGTTTATTAATTAAATAATATATAAAATTATACAAAATATTTTAACTTATATACATCGTATATATATATATATNNNTTTAAAATTTGATATTTTTTAAACATTTTATTTGCGTCTATAAATCTGGAGCGCACCCTATACATATGTTTACGTACATATCTTTTTGTTATGAACATATCTTCGCTGATTTTAACAGCTATAATCTCAGGCGTGAATTGGAGGAA ] [+] EMBL BE844300 [ TTCAGTTATGATGTATCATTGTTTAAGGGTCGATGTAACAAGGTTATAGATGCAAATCGAGTTAATGATTTTTTAAAAATATTTTTTATTTCTTTTAGAAAAAGAAATTAAATTTTTTAAATTAATAGACATCGGGATATTTTATCGTTTGTTTATTAATTAAATAATATATAAAATTATACAAAATATTTTAACTTATATACATCGTATATATATATATATGTATTTAAAATTTGATATTTTTTAAACATTTTATTTGCGTCTATAAATCTGGAGCGCACCCTATACATATGTTTACGTACATATCTTTTTGTTATGAACATATCTTCGCTGATTTTAACAGCTATAATCTCAGGCGTGAATTGGAGGAAACGGAAATCGAGGGACGTAACGTAGGACAGTACATTCTTCGAACGAATCGAATCTTCCGATTTCTCTACTACTCGTGAAAAACGGGTCGT] consensusID : consensus_634#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 216 fasta sequence [ACATTTTATTTGCGTCTATAAATCTGGAGCGCACCCTATACATATGTTTACGTACATATCTTTTTGTTATGAACATATCTTCGCTGATTTTAACAGCTATAATCTCAGGCGTGAATTGGAGGAAACGGAAGTCGAGGGACGTAACGTAGGACAGTACATGAAAGAAAATGCAAATTTCTTCGAACGAATCGAATCTTCCGATTTCTCTACTACTCG] [+] EMBL BI513067 [ACATTTTATTTGCGTCTATAAATCTGGAGCGCACCCTATACATATGTTTACGTACATATCTTTTTGTTATGAACATATCTTCGCTGATTTTAACAGCTATAATCTCAGGCGTGAATTGGAGGAAACGGAAGTCGAGGGACGTAACGTAGGACAGTACATGAAAGAAAATGCAAATTTCTTCGAACGAATCGAATCTTCCGATTTCTCTACTACTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_634#0 GCCATGACGTTACAGCTTACATTAAGTCTAGATATAAAAAAAAAAAAAAAAAAAATGGAA 60 consensus_634#1 ------------------------------------------------------------ consensus_634#0 GGAAATAGGAATGCTAATAAGAATCCAGTTGGAAAAAACAGACAATACTTATTACTATTG 120 consensus_634#1 ------------------------------------------------------------ consensus_634#0 TAATTCAGTAGAACGAGAGTCGAGATAATCGAGCACGTAGCGAGGGGCATTAATCCAACC 180 consensus_634#1 ------------------------------------------------------------ consensus_634#0 AGTTGCGACTAACGATCGTTTCAGTTATGATGTATCATTGTTCAAGGGTCGATGTAACAA 240 consensus_634#1 ------------------------------------------------------------ consensus_634#0 GGTTATAGATGCAAATCGAGTTAATGATTTTTTAAAAATATTTTTTATTTCTTTTAGAAA 300 consensus_634#1 ------------------------------------------------------------ consensus_634#0 AAGAAATTAAATTTTTTAAATTAATAGACATCGGGATATTTTATCGTTTGTTTATTAATT 360 consensus_634#1 ------------------------------------------------------------ consensus_634#0 AAATAATATATAAAATTATACAAAATATTTTAACTTATATACATCGTATATATATATATA 420 consensus_634#1 ------------------------------------------------------------ consensus_634#0 TNNNTTTAAAATTTGATATTTTTTAAACATTTTATTTGCGTCTATAAATCTGGAGCGCAC 480 consensus_634#1 --------------------------ACATTTTATTTGCGTCTATAAATCTGGAGCGCAC 34 ********************************** consensus_634#0 CCTATACATATGTTTACGTACATATCTTTTTGTTATGAACATATCTTCGCTGATTTTAAC 540 consensus_634#1 CCTATACATATGTTTACGTACATATCTTTTTGTTATGAACATATCTTCGCTGATTTTAAC 94 ************************************************************ consensus_634#0 AGCTATAATCTCAGGCGTGAATTGGAGGAAACGGAAATCGAGGGACGTAACGTAGGACAG 600 consensus_634#1 AGCTATAATCTCAGGCGTGAATTGGAGGAAACGGAAGTCGAGGGACGTAACGTAGGACAG 154 ************************************ *********************** consensus_634#0 TACAT-----------------TCTTCGAACGAATCGAATCTTCCGATTTCTCTACTACT 643 consensus_634#1 TACATGAAAGAAAATGCAAATTTCTTCGAACGAATCGAATCTTCCGATTTCTCTACTACT 214 ***** ************************************** consensus_634#0 CGTGAAAAACGGGTCGT 660 consensus_634#1 CG--------------- 216 ** |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |