These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_639#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 582 fasta sequence [TTTTTTTTTTTTTTTTTGATTGCACTNGCGGACCGCTTTCGTTTCTTCTTCTCTGGAGCGGATGTTGTGTCCGGAGCTGGACTTGGGGTTCGTACTNNNTCATACACTTTGCTCGCTGCTGCTCTTGCTTCAGCCTCGCGCGCGTGCCTCTCCGGATCTAGGCTACTTCCCTCCACGANNNATTCCGATATGCCAAATGCTTCGCGTAGCTTTGCATTTTTTTCTTGTTGCGCTTCGGCAATCTGGGGGGTCTCTCGTANNNTAAAAGAAAAAAATACACATTGCATGTCATTCACACAAATTAAGTTTAAGTTCAAGGGATTAATGATAAAAATTAATAATAAAGATTCTTGGATCATTAATCAATCTTAATAAACAAATCAAATTATGAAAGAAACATTTATCGGATATTAAAAATCCTTCGTATATAATGATCGTCATATAACAACATCGAAACTCTATCTAGTAAACCATATGCAAAGAACACATTGACCCCGTGCATCGAATACACTAAACTCACACATAGACCTAGAAACACGTGGCCATCGAACACGAAATGTTGTTCGAAAATCATGTAAGAAT] [+] EMBL BI516095 [TTTTTTTTTTTTTTTTTGATTGCACTNGCGGACCGCTTTCGTTTCTTCTTCTCTGGAGCGGATGTTGTGTCCGGAGCTGGACTTGGGGTTCGTACTNNNTCATACACTTTGCTCGCTGCTGCTCTTGCTTCAGCCTCGCGCGCGTGCCTCTCCGGATCTAGGCTACTTCCCTCCACGANNNATTCCGATATGCCAAATGCTTCGCGTAGCTTTGCATTTTTTTCTTGTTGCGCTTCGGCAATCTGGGGGGTCTCTCGTANNNTAAAAGAAAAAAATACCCATTGCATGTCATTCACACAAATTAAGTTTAAGTTCAAGGGATTAATGATAAAAATTAATAATAAAGATTCTTGGATCATTAATCAATCTTAATAAACAAATCAAATTATGAAAGAAACATTTATCG ] [+] EMBL BI513175 [ ACTAGCGGACCGCTTTCGTTTCTTCTTCTCTGGAGCGGATGTTGTGTCCGGAGCTGGACTTGGTGTTCGTACTAGTTCATACACTTTGCTCGCTGCTGCTCTTGCTTCAGCCTCGCGCGCGTGCCTCTCCGGATCTAGGCTACTTCCCTCCACGAAGAATTCCGATATGCCAAATGCTTCGCGTAGCTTTGCATTTTTTTCTTGTTGCGCTTCGGCAATCTGGTGTGTCTCTCGTACACTAAAAGAAAAAAATACACATTGCATGTCATTCACACAAATTAAGTTTAAGTTCAAGTGATTAATGATAAAAATTAATAATAAAGATTCTTGGATCATTAATCAATCTTAATAAACAAATCAAATTATGAAAGAAACATTTATCGGATATTAAAAATCCTTCGTATATAATGATCGTCATATAACAACATCGAAACTCTATCTAGTAAACCATATGCAAAGAACACATTGACCCCGTGCATCGAATACACTAAACTCACACATAGACCTAGAAACACGTGGCCATCGAACACGAAATGTTGTTCGAAAATCATGTAAGAAT] consensusID : consensus_639#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence [CCTCCTCAGTTCTTTCCTTCTTGTGCTTCTTTCCCTTTTTTTTTTTGATTGCACTAGCGGACCGCTTTCGTTTCTTCTTCTCTGGAGCGGATGTTGTGTCCGGAGCTGGACTTGGTGTTCGTACTAGTTCATACACTTTGCTCGCTGCTGCTCTTGCTTCAGCCTCGCGCGCGTGCCTCTCCGGATCTAGGCTACTTCCCTCCACGAAGAATTCCGATATGCCAAATGCTTCGCGTAGCTTTGCATTTTTTTCTTGTTGCGCTTCGGCAATCTGGTGTGTCTCTCGTACACGCGTCGAGATTTTCACCGTCATTGTAGCGCGGTATCGGAACACCTCGATAACCGCTTAATTACTGCCGAATTTCGCGATGATCCATAGAGCGTGTAATGAAATCCGGCAAAGAGGCGTTGCGGAGATGGTGGGCAGCGTGTTCTTCGATGTAGCGGTGGCGAACTT] [-] EMBL BI515392 [CCTCCTCAGTTCTTTCCTTCTTGTGCTTCTTTCCCTTTTTTTTTTTGATTGCACTAGCGGACCGCTTTCGTTTCTTCTTCTCTGGAGCGGATGTTGTGTCCGGAGCTGGACTTGGTGTTCGTACTAGTTCATACACTTTGCTCGCTGCTGCTCTTGCTTCAGCCTCGCGCGCGTGCCTCTCCGGATCTAGGCTACTTCCCTCCACGAAGAATTCCGATATGCCAAATGCTTCGCGTAGCTTTGCATTTTTTTCTTGTTGCGCTTCGGCAATCTGGTGTGTCTCTCGTACACGCGTCGAGATTTTCACCGTCATTGTAGCGCGGTATCGGAACACCTCGATAACCGCTTAATTACTGCCGAATTTCGCGATGATCCATAGAGCGTGTAATGAAATCCGGCAAAGAGGCGTTGCGGAGATGGTGGGCAGCGTGTTCTTCGATGTAGCGGTGGCGAACTT] consensusID : consensus_639#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence [ACTTGGTGTTCGTACTAGTTCATACACTTTGCTCGCTGCTGCTCTTGCTTCAGCCTCGCGCGCGTGCCTCTCCGGATCTAGGCTACTTCCCTCCACGAAGAATTCCGATATGCCAAATGCTTCGCGTAGCTTTGCATTTTTTTCTTGTTGCGCTTCGGCAATCTGGTGTGTCTCTCGTACACTGACGACGGAGCGCATGTTGCTTCGCCGTCCGGCGAGGAGGTGGAGTTGTATGCGCTGACAACAGCAACAATGCTGTCGCATCTGCAGTTGTGCACGCTTCTTTCCATTCGCTGTTTGCAATTTTCGTTTTCGCGATCGTTTCATTACTTTCTGCCTATCCAGAAAAAAATTTCCTCTCCACAACGT] [+] EMBL BI506348 [ACTTGGTGTTCGTACTAGTTCATACACTTTGCTCGCTGCTGCTCTTGCTTCAGCCTCGCGCGCGTGCCTCTCCGGATCTAGGCTACTTCCCTCCACGAAGAATTCCGATATGCCAAATGCTTCGCGTAGCTTTGCATTTTTTTCTTGTTGCGCTTCGGCAATCTGGTGTGTCTCTCGTACACTGACGACGGAGCGCATGTTGCTTCGCCGTCCGGCGAGGAGGTGGAGTTGTATGCGCTGACAACAGCAACAATGCTGTCGCATCTGCAGTTGTGCACGCTTCTTTCCATTCGCTGTTTGCAATTTTCGTTTTCGCGATCGTTTCATTACTTTCTGCCTATCCAGAAAAAAATTTCCTCTCCACAACGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_639#0 -----------------------------TTTTTTTTTTTTTTTTTGATTGCACTNGCGG 31 consensus_639#1 CCTCCTCAGTTCTTTCCTTCTTGTGCTTCTTTCCCTTTTTTTTTTTGATTGCACTAGCGG 60 consensus_639#2 ------------------------------------------------------------ consensus_639#0 ACCGCTTTCGTTTCTTCTTCTCTGGAGCGGATGTTGTGTCCGGAGCTGGACTTGGGGTTC 91 consensus_639#1 ACCGCTTTCGTTTCTTCTTCTCTGGAGCGGATGTTGTGTCCGGAGCTGGACTTGGTGTTC 120 consensus_639#2 -------------------------------------------------ACTTGGTGTTC 11 ****** **** consensus_639#0 GTACTNNNTCATACACTTTGCTCGCTGCTGCTCTTGCTTCAGCCTCGCGCGCGTGCCTCT 151 consensus_639#1 GTACTAGTTCATACACTTTGCTCGCTGCTGCTCTTGCTTCAGCCTCGCGCGCGTGCCTCT 180 consensus_639#2 GTACTAGTTCATACACTTTGCTCGCTGCTGCTCTTGCTTCAGCCTCGCGCGCGTGCCTCT 71 ***** **************************************************** consensus_639#0 CCGGATCTAGGCTACTTCCCTCCACGANNNATTCCGATATGCCAAATGCTTCGCGTAGCT 211 consensus_639#1 CCGGATCTAGGCTACTTCCCTCCACGAAGAATTCCGATATGCCAAATGCTTCGCGTAGCT 240 consensus_639#2 CCGGATCTAGGCTACTTCCCTCCACGAAGAATTCCGATATGCCAAATGCTTCGCGTAGCT 131 *************************** ****************************** consensus_639#0 TTGCATTTTTTTCTTGTTGCGCTTCGGCAATCTGGGGGGTCTCTCGTANNNTAAAAGAAA 271 consensus_639#1 TTGCATTTTTTTCTTGTTGCGCTTCGGCAATCTGGTGTGTCTCTCGTACACGCGTCGAGA 300 consensus_639#2 TTGCATTTTTTTCTTGTTGCGCTTCGGCAATCTGGTGTGTCTCTCGTACACTGACGACGG 191 *********************************** * ********** consensus_639#0 AAAATACACA-TTGCATGTCATTCACACAAATTAAGTTTAAGTTCAAGGG-ATTAATGAT 329 consensus_639#1 TTTTCACCGT-CATTGTAGCGCGGTATCGGAACACCTCGATAACCGCTTA-ATTACTGCC 358 consensus_639#2 AGCGCATGTTGCTTCGCCGTCCGGCGAGGAGGTGGAGTTGTATGCGCTGACAACAGCAAC 251 * * * * consensus_639#0 AAAAATTAATAATAAAGATTCTTGGA-TCAT-TAATCAATCTTAATAAACAAATCAAATT 387 consensus_639#1 GAATTTC----GCGATGATCCATAGA-GCGTGTAATGAAATCCGGCAAAGAGGC---GTT 410 consensus_639#2 AATGCTGTCGCATCTGCAGTTGTGCACGCTTCTTTCCATTCGCTGTTTGCAATTTTCGTT 311 * * * * * * * * * * ** consensus_639#0 ATGAAAGAAACATTTATCGGATATTAAAAATCCTTCGTATATAATGATCGTCATATAACA 447 consensus_639#1 GCGGAGATGGTGGGCAGCGTG---------TTCTTCG-ATGTAGCGGTGGCGAACTT--- 457 consensus_639#2 TTCGCGATCGT-TTCATTACTTTCT-----GCCTATCCAGAAAAAAATTTCCTCTCCACA 365 * ** * * * consensus_639#0 ACATCGAAACTCTATCTAGTAAACCATATGCAAAGAACACATTGACCCCGTGCATCGAAT 507 consensus_639#1 ------------------------------------------------------------ consensus_639#2 ACGT-------------------------------------------------------- 369 consensus_639#0 ACACTAAACTCACACATAGACCTAGAAACACGTGGCCATCGAACACGAAATGTTGTTCGA 567 consensus_639#1 ------------------------------------------------------------ consensus_639#2 ------------------------------------------------------------ consensus_639#0 AAATCATGTAAGAAT 582 consensus_639#1 --------------- consensus_639#2 --------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |