These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_640#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 709 fasta sequence [TGGCGGCGCGGGAATTCGATTAGCGTGGTCGCGGCGAGGTATTCCCGCCCCGGATTCAGATTGTTTATCGTCGCCTCGGTGATTTTTCTCGACAAGATCTTCATCGTTCTCCACTCGGTCGTGTCGGTTGGCCTGTACCAGACCGAGTATTCCATCTTGGGTCTCACGTATCCCGGCACCCAGGTCAACGTGACAGCGTTGTTGCTGCTGTTGGCGCTCAAGTTGTACGGCGCCCTCGGAGGGACGTTCAACACCATTAATTCCGTGTCCGCGACCACCGTCGCGGCTTCGTTGCTCACCGCGCATTGGTACAACCCCCTGTCCTGCTCTTGTATCCTGTCTATCGTCAAGTTGCCACCGATTATAATCGTTCTGTTGGTCAACGGTATTGGCGAGCCGTCCTTGTACCAAACGATCGACGGCCTGTGAGATTGATCTCCATCCTTCGCGTCGCAGGGTATCTCCAAATTCTCTCCCAATTTCCTTATGTACAAGTGTTGGGGGGTGACGGTGAACACGGGCGGCCTCTGCACGATCACGGTGATCGACGGACTGGGTCCCTCGGTCCCAAGCTCGTTGTACGGCGTGCAAGTGTAACTTCCCGAGTGGGTTTCGTCCACCTTGCTGAAGTAGAGGGAGCCGTTCCTCCTGTAGAACACACCCTGAAAGTTGTACCTGCCCGGNGCGGCGCTCGAATCAATAGTGAATT] [+] EMBL AB078173 [TGGCGGCGCGGGAATTCGATTAGCGTGGTCGCGGCGAGGTATTCCCGCCCCGGATTCAGATTGTTTATCGTCGCCTCGGTGATTTTTCTCGACAAGATCTTCATCGTTCTCCACTCGGTCGTGTCGGTTGGCCTGTACCAGACCGAGTATTCCATCTTGGGTCTCACGTATCCCGGCACCCAGGTCAACGTGACAGCGTTGTTGCTGCTGTTGGCGCTCAAGTTGTACGGCGCCCTCGGAGGGACGTTCAACACCATTAATTCCGTGTCCGCGACCACCGTCGCGGCTTCGTTGCTCACCGCGCATTGGTACAACCCCCTGTCCTGCTCTTGTATCCTGTCTATCGTCAAGTTGCCACCGATTATAATCGTTCTGTTGGTCAACGGTATTGGCGAGCCGTCCTTGTACCAAACGATCGACGGCCTGTGAGATTGATCTCCATCCTTCGCGTCGCAGGGTATCTCCAAATTCTCTCCCAATTTCCTTATGTACAAGTGTTGGGGGGTGACGGTGAACACGGGCGGCCTCTGCACGATCACGGTGATCGACGGACTGGGTCCCTCGGTCCCAAGCTCGTTGTACGGCGTGCAAGTGTAACTTCCCGAGTGGGTTTCGTCCACCTTGCTGAAGTAGAGGGAGCCGTTCCTCCTGTAGAACACACCCTGAAAGTTGTACCTGCCCGGNGCGGCGCTCGAATCAATAGTGAATT] consensusID : consensus_640#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 540 fasta sequence [TAGTAAGTGTCGGTCGTTTCCGCTCTGCCGTACAATTGCTCGGACGGCCCACGGAACCATCTAACGGCGTACAATCTCACTTGCTCCTTCCCGTAAGCAGGCGGCTCCCAAGTGACGAGATAGCCTTGCACGGTCGCTTGCACTCTCACGTTCAACGGCGGGCCCATCCGATCGTCTGGAGGACTGCGATACTCCGACGCCGAATTCTCCTCCAACGAATTGGGCTGGGTGAATATACGCAACGTTTTACTGAACATCCCGTCCCCGTGTTTGTCCTGGCTAAGCACCATGAACTCGTACTCCCGCCCCGGATTCAGATTGTTTATCGTCGCCTCGGTGATTTTTCTCGACAAGATCTTCATCGTTCTCCACTCGGTCGTGTCGGTTGGCCTGTACCAGACCGAGTATTCCATCTTGGGTCTCACGTATCCCGGCACCCAGGTCAACGTGACAGCGTTGTTGCTGCTGTTGGCGCTCAAGTTGTACGGCGCCCTCGGAGGGACGTTCAACACCATTAATTCCGTGTCCGCGACCACCGTC] [-] EMBL BI514469 [TAGTAAGTGTCGGTCGTTTCCGCTCTGCCGTACAATTGCTCGGACGGCCCACGGAACCATCTAACGGCGTACAATCTCACTTGCTCCTTCCCGTAAGCAGGCGGCTCCCAAGTGACGAGATAGCCTTGCACGGTCGCTTGCACTCTCACGTTCAACGGCGGGCCCATCCGATCGTCTGGAGGACTGCGATACTCCGACGCCGAATTCTCCTCCAACGAATTGGGCTGGGTGAATATACGCAACGTTTTACTGAACATCCCGTCCCCGTGTTTGTCCTGGCTAAGCACCATGAACTCGTACTCCCGCCCCGGATTCAGATTGTTTATCGTCGCCTCGGTGATTTTTCTCGACAAGATCTTCATCGTTCTCCACTCGGTCGTGTCGGTTGGCCTGTACCAGACCGAGTATTCCATCTTGGGTCTCACGTATCCCGGCACCCAGGTCAACGTGACAGCGTTGTTGCTGCTGTTGGCGCTCAAGTTGTACGGCGCCCTCGGAGGGACGTTCAACACCATTAATTCCG ] [-] EMBL BI514022 [ CTAACGGCGTACAATCTCACTTGCTCCTTCCCGTAAGCAGGCGGCTCCCAAGTGACGAGATAGCCTTGCACGGTCGCTTGCACTCTCACGTTCAACGGCGGGCCCATCCGATCGTCTGGAGGACTGCGATACTCCGACGCCGAATTCTCCTCCAACGAATTGGGCTGGGTGAATATACGCAACGTTTTACTGAACATCCCGTCCCCGTGTTTGTCCTGGCTAAGCACCATGAACTCGTACTCCCGCCCCGGATTCAGATTGTTTATCGTCGCCTCGGTGATTTTTCTCGACAAGATCTTCATCGTTCTCCACTCGGTCGTGTCGGTTGGCCTGTACCAGACCGAGTATTCCATCTTGGGTCTCACGTATCCCGGCACCCAGGTCAACGTGACAGCGTTGTTGCTGCTGTTGGCGCTCAAGTTGTACGGCGCCCTCGGAGGGACGTTCAACACCATTAATTCCGTGTCCGCGACCACCGTC] [-] EMBL BI514118 [ CCGTAAGCAGGCGGCTCCCAAGTGACGAGATAGCCTTGCACGGTCGCTTGCACTCTCACGTTCAACGGCGGGCCCATCCGATCGNCTGGAGGACTGCGATACTCCGACGCCGAATTCTCCTCCAACGAATTGGGCTGGGTGAATATACGCAACGTTTTACTGAACATCCCGTCCCCGTGTTTGTCCTGGCTAAGCACCATGAACTCGTACTCCCGCCCCGGATTCAGATTGTTTATCGTCGCCTCGGTGATTTTTCTCGACAAGATCTTCATCGTTCTCCACTCGGTCGTGTCGGTTGGCCTGTACCAGACCGAGTATTCCATCTTGGGTCTCACGTATCCCGGCACCCAGGTCAACGTGACAGCGTTGTTGCTGCTGTTGGCGCTCAAGTTGTACGGCGCCCTCGGAGGGACGTTCAACACCATTAATTCCGTGTCCGCGACCACCGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_640#0 TGGCGGCGCGGGAATTCGATTAGCGTGGTCGCGGCGAGGTATTCCCGCCCCGGATTCAGA 60 consensus_640#1 ------------------------------------------------------------ consensus_640#0 TTGTTTATCGTCGCCTCGGTGATTTTTCTCGACAAGATCTTCATCGTTCTCCACTCGGTC 120 consensus_640#1 ------------------------------------------------------TAGTAA 6 * * consensus_640#0 GTGTCGGTTGGCCTGTACCAGACCGAGTATTCCATCTTGGGTCTCACGTATCCCGGCACC 180 consensus_640#1 GTGTCGGTCG-TTTCCGCTCTGCCGTACAATTGCTCGGACGGCCCACGGAACC----ATC 61 ******** * * * *** * * ** * * **** * ** * * consensus_640#0 CAGGTCAACGTGACAGCGTTGTTGCTGCTGTTGGCGCTCAAGTTGTACGGCGCCCTCGGA 240 consensus_640#1 TAA--CGGCGTACAATCTCACTTGCTCCTTCCCGTAAGCAGGCGGCTCCCAAGTGACGAG 119 * * *** * * ***** ** * ** * * * ** consensus_640#0 GGGACGTTCAACACCATTAATTCCGTGTCCGCGACCACCGTCGCGGCTTCGTTGCTCACC 300 consensus_640#1 ATAGCCTT--GCACGGTCGCTTGCACTCTCACGTTCAACGGCG-GGCCCATCCGATCGTC 176 * ** *** * ** * * ** ** ** ** *** * ** * consensus_640#0 GCGCATTGGTACAACCCCCTGTCCTGCTCTTGTATCCTGTCTATCGTCAAGTTGCCACCG 360 consensus_640#1 -TGGAGGACTGCGATACTCCGACGCCGAATTCTCCTCCAACGA--ATTGGGCTG--GGTG 231 * * * * * * * * * ** * * * * * * ** * consensus_640#0 ATTATAATCGTTCTGTTGGTCAACGGTATTGGCGAGCCGTCCTTGTACCAAACGATCGAC 420 consensus_640#1 AATATACGCAACGTTTTACTGAACA-TCCCGTC--CCCGTGTTTGTCCTGGCTAAGCA-- 286 * **** * * ** * *** * * * **** **** * * * consensus_640#0 GGCCTGTGAGATTGATCTCCATCCTTCGCGTCGCAGGGTATCTCCAAATTCTCTCCCAAT 480 consensus_640#1 ---CCATGAACTCGTACTCCCGCCCCGGATT--CAGATTGTTTATCGTCGCCTCGGTGAT 341 * *** * * **** ** * * *** * * * * ** consensus_640#0 TTCCTTATGTACAAGTGTTGGGGGGTGAC----GGTGAACACGGGCGGCCTCTGCACGAT 536 consensus_640#1 TTTTCTCGACAAGATCTTCATCGTTCTCCACTCGGTCGTGTCGGTTGGCCTGTACCAGAC 401 ** * * * * * * *** *** ***** * * ** consensus_640#0 CACGGTGATCGACGGACTGGGTCCCTCGGTCCCAAGCTCGTTGTACGGCGTGCAAGTGTA 596 consensus_640#1 CG-AGTATTCCATC--TTGGGTCTCACGTATCCCGGCACCCAGGTCAACGTGACAGCGTT 458 * ** ** * ****** * ** ** ** * * * **** ** ** consensus_640#0 ACTTCCCGAGTGGGTTTCGTCCACCTTGCTGAAGTAGAGGGAGCCGTTCCTCCTGTAGAA 656 consensus_640#1 GTTGCTGCTGTTGG---CGCTCAAGTTGT--------ACGGCGCCCTCGGAGGGACGTTC 507 * * ** ** ** ** *** * ** *** * consensus_640#0 CACACCCTGAAAGTTGTACCTGCCCGGNGCGGCGCTCGAATCAATAGTGAATT 709 consensus_640#1 AACACCATTAATTCCGTGTCCGCGACCACCGTC-------------------- 540 ***** * ** ** * ** ** * |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |