These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_654#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence [CCTGTGAGCGCGAGAATAATAGTCCAACCTCAGAAGCCTAGGCTTGTATCGAGGATAGGAGGGATCGATATCGATTTCCTGGGAGCTAATCCATTCCAAGGTGGAGTACGTTTTCCCAACTTCCCAGCCCCACCCACTCGACGACCTGTGCAAAGTCCTCCGCCCTGCGTCTGGGCTGTTATCCAATGTTGTCCATCGAATCAACGTCTGGTCACATGTTTCGAGTCGTTGGGCTGTCCAGGTGTCAATTGGGATTCTAATCCTTGCAGAGATAGCGTCTCTCAAGCAGCTAGGGCACAGGTGGAGAAATTCTACAGGGAAACCGAGGACGAGGAGGAACGTTATTGAAAGGGGAACCGAGAAATATGTAGATTGGTAGATTCCATTTTTTTAGTATATTTTGATGAGTGGGGTCGAAAAATTCAATGATCAGAATTAAAGAATTTTTTTTCGATTAAACTATTAATTATTTGGAATGATATCGACAAATGGAATTTTCATAATTTTAAGTAACCATTAATTTTATCATTTTGATAAAAAAAAAATCGTTATAGGAATAATAAAATGGAAACGTAAATTTTCAATCAAATTTTTATT] [+] EMBL BI509685 [CCTGTGAGCGCGAGAATAATAGTCCAACCTCAGAAGCCTAGGCTTGTATCGAGGATAGGAGGGATCGATATCGATTTCCTGGGAGCTAATCCATTCCAAGGTGGAGTACGTTTTCCCAACTTCCCAGCCCCACCCACTCGACGACCTGTGCAAAGTCCTCCGCCCTGCGTCTGGGCTGTTATCCAATGTTGTCCATCGAATCAACGTCTGGTCACATGTTTCGAGTCGTTGGGCTGTCCAGGTGTCAATTGGGATTCTAATCCTTGCAGAGATAGCGTCTCTCAAGCAGCTAGGGCACAGGTGGAGAAATTCTACAGGGAAACCGAGGACGAGGAGGAACGTTATTGAAAGGGGAACCGAGAAATATGTAGATTGGTAGATTCCATTTTTTTAGTATATTTTGATGAGTGGGGTCGAAAAATTCAATGATCAGAATTAAAGAATTTTTTTTCGATTAAACTATTAATTATTTGGAATGATATCGACAAATGGAATTTTCATAATTTTAAGTAACCATTAATTTTATCATTTTGATAAAAAAAAAATCGTTATAGGAATAATAAAATGGAAACGTAAATTTTCAATCAAATTTTTATT] consensusID : consensus_654#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 593 fasta sequence [GAGACGACAGGAAGAGGCGAGGTTGAACGCGTTGCCTGTGAGCGCGAGAATAATAGTCCAACCTCAGAAGCCTAGGCTTGTATCGAGGATAGGAGGGATCGATATCGATTTCCTGGGAGCTAATCCATTCCAAGGTGGAGTACGTTTCCCCAACTTCCCAGCCCCACCCACTCGACGACCTGTGCAAAGTCCTCCGCCCTGCGTCTGGGCTGTTATCCAATGTTGTCCATCGAATCAACGTCTGGTCACATGTTTCGAGTCGTTGGGCTGTCCAGGTGTCAATTGGGATTCTAATCCTTGCAGAGATAGCGTCTCTCAAGCAGCTAGGGCACAGGTGGAGAAATTCTACAGGGAAACCGAGGACGAGGAGGAACGTTATTGAAAGGGGAACCGAGAAATATGTAGATTGGTAGATTCCATTTTTTTAGTATATTTTGATGAGTGGGGTCGAAAAATTCAACGATCAGAATTAAAGAATTTTTTTTCGATTAATTTGGAACGATATATCAACAAATGGAATTTTCAAAATTTTAAGTAACCGTCAATTTTATCATTTTGATAAAAAAAAAATCGTTATAGGAATAATAAAATGG] [+] EMBL BI515006 [GAGACGACAGGAAGAGGCGAGGTTGAACGCGTTGCCTGTGAGCGCGAGAATAATAGTCCAACCTCAGAAGCCTAGGCTTGTATCGAGGATAGGAGGGATCGATATCGATTTCCTGGGAGCTAATCCATTCCAAGGTGGAGTACGTTTCCCCAACTTCCCAGCCCCACCCACTCGACGACCTGTGCAAAGTCCTCCGCCCTGCGTCTGGGCTGTTATCCAATGTTGTCCATCGAATCAACGTCTGGTCACATGTTTCGAGTCGTTGGGCTGTCCAGGTGTCAATTGGGATTCTAATCCTTGCAGAGATAGCGTCTCTCAAGCAGCTAGGGCACAGGTGGAGAAATTCTACAGGGAAACCGAGGACGAGGAGGAACGTTATTGAAAGGGGAACCGAGAAATATGTAGATTGGTAGATTCCATTTTTTTAGTATATTTTGATGAGTGGGGTCGAAAAATTCAACGATCAGAATTAAAGAATTTTTTTTCGATTAATTTGGAACGATATATCAACAAATGG ] [+] EMBL BI512550 [ AGGAGGGATCGATATCGATTTCCTGGGAGCTAATCCATTCCAAGGTGGAGTACGTTTCCCCAACTTCCCAGCCCCACCCACTCGACGACCTGTGCAAAGTCCTCCGCCCTGCGTCTGGGCTGTTATCCAATGTTGTCCATCGAATCAACGTCTGGTCACATGTTTCGAGTCGTTGGGCTGTCCAGGTGTCAATTGGGATTCTAATCCTTGCAGAGATAGCGTCTCTCAAGCAGCTAGGGCACAGGTGGAGAAATTCTACAGGGAAACCGAGGACGAGGAGGAACGTTATTGAAAGGGGAACCGAGAAATATGTAGATTGGTAGATTCCATTTTTTTAGTATATTTTGATGAGTGGGGTCGAAAAATTCAACGATCAGAATTAAAGAATTTTTTTTCGATTAATTTGGAACGATATATCAACAAATGGAATTTTCAAAATTTTAAGTAACCGTCAATTTTATCATTTTGATAAAAAAAAAATCGTTATAGGAATAATAAAATGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_654#0 ----------------------------------CCTGTGAGCGCGAGAATAATAGTCCA 26 consensus_654#1 GAGACGACAGGAAGAGGCGAGGTTGAACGCGTTGCCTGTGAGCGCGAGAATAATAGTCCA 60 ************************** consensus_654#0 ACCTCAGAAGCCTAGGCTTGTATCGAGGATAGGAGGGATCGATATCGATTTCCTGGGAGC 86 consensus_654#1 ACCTCAGAAGCCTAGGCTTGTATCGAGGATAGGAGGGATCGATATCGATTTCCTGGGAGC 120 ************************************************************ consensus_654#0 TAATCCATTCCAAGGTGGAGTACGTTTTCCCAACTTCCCAGCCCCACCCACTCGACGACC 146 consensus_654#1 TAATCCATTCCAAGGTGGAGTACGTTTCCCCAACTTCCCAGCCCCACCCACTCGACGACC 180 *************************** ******************************** consensus_654#0 TGTGCAAAGTCCTCCGCCCTGCGTCTGGGCTGTTATCCAATGTTGTCCATCGAATCAACG 206 consensus_654#1 TGTGCAAAGTCCTCCGCCCTGCGTCTGGGCTGTTATCCAATGTTGTCCATCGAATCAACG 240 ************************************************************ consensus_654#0 TCTGGTCACATGTTTCGAGTCGTTGGGCTGTCCAGGTGTCAATTGGGATTCTAATCCTTG 266 consensus_654#1 TCTGGTCACATGTTTCGAGTCGTTGGGCTGTCCAGGTGTCAATTGGGATTCTAATCCTTG 300 ************************************************************ consensus_654#0 CAGAGATAGCGTCTCTCAAGCAGCTAGGGCACAGGTGGAGAAATTCTACAGGGAAACCGA 326 consensus_654#1 CAGAGATAGCGTCTCTCAAGCAGCTAGGGCACAGGTGGAGAAATTCTACAGGGAAACCGA 360 ************************************************************ consensus_654#0 GGACGAGGAGGAACGTTATTGAAAGGGGAACCGAGAAATATGTAGATTGGTAGATTCCAT 386 consensus_654#1 GGACGAGGAGGAACGTTATTGAAAGGGGAACCGAGAAATATGTAGATTGGTAGATTCCAT 420 ************************************************************ consensus_654#0 TTTTTTAGTATATTTTGATGAGTGGGGTCGAAAAATTCAATGATCAGAATTAAAGAATTT 446 consensus_654#1 TTTTTTAGTATATTTTGATGAGTGGGGTCGAAAAATTCAACGATCAGAATTAAAGAATTT 480 **************************************** ******************* consensus_654#0 TTTTTCGATTAAACTATTAATTATTTGGAATGATAT--CGACAAATGGAATTTTCATAAT 504 consensus_654#1 TTTTTCGATTAA-----------TTTGGAACGATATATCAACAAATGGAATTTTCAAAAT 529 ************ ******* ***** * **************** *** consensus_654#0 TTTAAGTAACCATTAATTTTATCATTTTGATAAAAAAAAAATCGTTATAGGAATAATAAA 564 consensus_654#1 TTTAAGTAACCGTCAATTTTATCATTTTGATAAAAAAAAAATCGTTATAGGAATAATAAA 589 *********** * ********************************************** consensus_654#0 ATGGAAACGTAAATTTTCAATCAAATTTTTATT 597 consensus_654#1 ATGG----------------------------- 593 **** |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |