These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_669#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 503 fasta sequence [GAGAAAGAAAGTGAAATGTTATATGACATCGTTTAACATTGAAGTCTTCGTAATACGCAAACTCTAATATTTAAATTATCGATTTCTTGTTTGAATCTTTACATTAAATAAAAATTTTTTTACACTGGCAATTGAAATATAAATTTCTTTGAAGAATTATCAATAACAAATGAAATTCAATGAAAAATTATGAGTGTGAAAAGTAGACATCATCGAGTATATTTTACTTTCAGTCACGCTGTTTTTTGACGCAAACACATACATCAAAAGATATCGAGTACCGGTGAAGAAGATTCCAGAGGAGCTGCTGATCAAATTTGTTGCCTTGTAGATGAGGGTGAACGATGTACTCGGCCAGCTGGCAACGCTTCTTATAGTAAACGTATTCAAAAAACTGTAACTCAGCGACGATTAAAACTTAATCTTGATCAAGTGGCACGTCATATATACATTTNNGATTACCATAAACAAGTAATACAATGTGCAAGATCTAAACAACAACA] [+] EMBL BI513862 [GAGAAAGAAAGTGAAATGTTATATGACATCGTTTAACATTGAAGTCTTCGTAATACGCAAACTCTAATATTTAAATTATCGATTTCTTGTTTGAATCTTTACATTAAATAAAAATTTTTTTACACTGGCAATTGAAATATAAATTTCTTTGAAGAATTATCAATAACAAATGAAATTCAATGAAAAATTATGAGTGTGAAAAGTAGACATCATCGAGTATATTTTACTTTCAGTCACGCTGTTTTTTGACGCAAACACATACATCAAAAGATATCGAGTACCGGTGAAGAAGATTCCAGAGGAGCTGCTGATCAAATTTGTTGCCTTGTAGATGAGGGTGAACGATGTACTCGGCCAGCTGGCAACGCTTCTTATAGTAAACGTATTCAAAAAACTGTAACTCAGCGACGATTAAAACTTAATCTTGATCAAGTGGCACGTCATATATACATTTGTGATTACCATAAACAAGTAATACAATGTGCAAGATCTAAACAACAACA] [+] EMBL BI513909 [GAGAAAGAAAGTGAAATGTTATATGACATCGTTTAACATTGAAGTCTTCGTAATACGCAAACTCTAATATTTAAATTATCGATTTCTTGTTTGAATCTTTACATTAAATAAAAATTTTTTTACACTGGCAATTGAAATATAAATTTCTTTGAAGAATTATCAATAACAAATGAAATTCAATGAAAAATTATGAGTGTGAAAAGTAGACATCATCGAGTATATTTTACTTTCAGTCACGCTGTTTTTTGACGCAAACACATACATCAAAAGATATCGAGTACCGGTGAAGAAGATTCCAGAGGAGCTGCTGATCAAATTTGTTGCCTTGTAGATGAGGGTGAACGATGTACTCGGCCAGCTGGCAACGCTTCTTATAGTAAACGTATTCAAAAAACTGTAACTCAGCGACGATTAAAACTTAATCTTGATCAAGTGGCACGTCATATATACATTTNNGATTACCATAAACAAGTAATACAATGTGCAAGATCTAAA ] consensusID : consensus_669#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 459 fasta sequence [TAGAAACATAAACGTATTACGAAGNGACAGTAGTGTTAAATGTTTGTTTTGTAACAAAATTTTTAAAATATTTATAGTAATATATATATAAAATCAACTCGTATGTTAAATTGTTTAAGAGAAAGAAAGTGAAATGTTATATGACATCGTTTAACATTGAAGTCTTCGTAATACGCAAACTCTAATATTTAAATTATCGATTTCTTGTTTGAATCTTTACATTAAATAAAAATTTTTTTACACTGGCAATTGAAATATAAATTTCTTTGAAGAATTATCAATAACAAATGAAATTCAATGAAAAATTATGAGTGTGAAAAGTAGACATCATCGAGTATATTTTACTTTCAGTCACGCTGTTTTTTGACGCAAATACATACATCAAAAGATATCGAGGTTGTTAAAGTTCTAAATACTCTTCATACCGATTTAGTTGATGTTAAGAATAAAAAAAAATGA] [+] EMBL BI516040 [TAGAAACATAAACGTATTACGAAGNGACAGTAGTGTTAAATGTTTGTTTTGTAACAAAATTTTTAAAATATTTATAGTAATATATATATAAAATCAACTCGTATGTTAAATTGTTTAAGAGAAAGAAAGTGAAATGTTATATGACATCGTTTAACATTGAAGTCTTCGTAATACGCAAACTCTAATATTTAAATTATCGATTTCTTGTTTGAATCTTTACATTAAATAAAAATTTTTTTACACTGGCAATTGAAATATAAATTTCTTTGAAGAATTATCAATAACAAATGAAATTCAATGAAAAATTATGAGTGTGAAAAGTAGACATCATCGAGTATATTTTACTTTCAGTCACGCTGTTTTTTGACGCAAATACATACATCAAAAGATATCGAGGTTGTTAAAGTTCTAAATACTCTTCATACCGATTTAGTTGATGTTAAGAATAAAAAAAAATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_669#0 ------------------------------------------------------------ consensus_669#1 TAGAAACATAAACGTATTACGAAGNGACAGTAGTGTTAAATGTTTGTTTTGTAACAAAAT 60 consensus_669#0 ----------------------------------------------------------GA 2 consensus_669#1 TTTTAAAATATTTATAGTAATATATATATAAAATCAACTCGTATGTTAAATTGTTTAAGA 120 ** consensus_669#0 GAAAGAAAGTGAAATGTTATATGACATCGTTTAACATTGAAGTCTTCGTAATACGCAAAC 62 consensus_669#1 GAAAGAAAGTGAAATGTTATATGACATCGTTTAACATTGAAGTCTTCGTAATACGCAAAC 180 ************************************************************ consensus_669#0 TCTAATATTTAAATTATCGATTTCTTGTTTGAATCTTTACATTAAATAAAAATTTTTTTA 122 consensus_669#1 TCTAATATTTAAATTATCGATTTCTTGTTTGAATCTTTACATTAAATAAAAATTTTTTTA 240 ************************************************************ consensus_669#0 CACTGGCAATTGAAATATAAATTTCTTTGAAGAATTATCAATAACAAATGAAATTCAATG 182 consensus_669#1 CACTGGCAATTGAAATATAAATTTCTTTGAAGAATTATCAATAACAAATGAAATTCAATG 300 ************************************************************ consensus_669#0 AAAAATTATGAGTGTGAAAAGTAGACATCATCGAGTATATTTTACTTTCAGTCACGCTGT 242 consensus_669#1 AAAAATTATGAGTGTGAAAAGTAGACATCATCGAGTATATTTTACTTTCAGTCACGCTGT 360 ************************************************************ consensus_669#0 TTTTTGACGCAAACACATACATCAAAAGATATCGAGTACCGGTGAAGAAGATTCCAGAGG 302 consensus_669#1 TTTTTGACGCAAATACATACATCAAAAGATATCGA-----GGTTGTTAAAGTTCTAAATA 415 ************* ********************* *** ** *** * * consensus_669#0 AGCTGCTGATCAAATTTGTTGCC-TTGTAGATGAGGGTGAACGATGTACTCGGCCAGCTG 361 consensus_669#1 CTCTTCATACCGATTTAGTTGATGTTAAGAATAAAAAAAAATGA---------------- 459 ** * * * * ** **** ** ** * ** ** consensus_669#0 GCAACGCTTCTTATAGTAAACGTATTCAAAAAACTGTAACTCAGCGACGATTAAAACTTA 421 consensus_669#1 ------------------------------------------------------------ consensus_669#0 ATCTTGATCAAGTGGCACGTCATATATACATTTNNGATTACCATAAACAAGTAATACAAT 481 consensus_669#1 ------------------------------------------------------------ consensus_669#0 GTGCAAGATCTAAACAACAACA 503 consensus_669#1 ---------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |