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Apis mellifera
cluster # 687 cluster # 687       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_687#0 length = 541 sequences # 2  
consensus_687#1 length = 497 sequences # 1  

consensusID : consensus_687#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 541
fasta sequence
                              [GCTCGTCGATCGAGAAATAAGATCAAGCTTGACTAATTGTGATGATAATCTCGGACGAAGTTATTTATTTTGAGGATAAGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTAGTGAGATAAAAAAACTTAAGGGTGCTTTGAAATGTTTCAACGTTAAACGCGAATGTTTTTAATCACGATTTGATGATCGATGATGTTTAAGAAACGATCAGTTGATTCCTAGAAAGTAAATTTTGAGAGCTACATTATAAATAATTAAACACTTCGCGGGCAAACAAGCGCTAAATATTGAATATATATACGTATGACTATAAAAATAAGAAGATTCGTATCATCTTGAAAAATTTAAAGAACTGTCACCGAAGTGTTATGTCATATCCGCCCAAAAACCCGTCAATCCAATCAGAAAGTAATATCGTCGTACATGTTGAAAAATTTGAGAAATAAGTACTTTAAGATACTTTCTGAACTCATCGTTTCTTCGATCGATGAATCAAATGGATAAATAATCGATCAAATCGG]

[+] EMBL BI508223             [GCTCGTCGATCGAGAAATAAGATCAAGCTTGACTAATTGTGATGATAATCTCGGACGAAGTTATTTATTTTGAGGATAAGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTAGTGAGATAAAAAAACTTAAGGGTGCTTTGAAATGTTTCAACGTTAAACGCGAATGTTTTTAATCACGATTTGATGATCGATGATGTTTAAGAAACGATCAGTTGATTCCTAGAAAGTAAATTTTGAGAGCTACATTATAAATAATTAAACACTTCGCGGGCAAACAAGCGCTAAATATTGAATATATATACGTATGACTATAAAAATAAGAAGATTCGTATCATCTTGAAAAATTTAAAGAACTGTCACCGAAGTGTTATGTCATATCCGCCCAAAAACCCGTCAATCCAATCAGAAAGTAATATCGTCGTACATGTTGAAAAATTTGAGAAATAAGTACTTTAAGATACTTTCTGAACTCATCGTTTCTTCGATCGATGAATCAAATGGATAAATAATCGATCAA     ]
[+] EMBL BI508729             [                         AGCTTGACTAATTGTGATGATAATCTCGGACGAAGTTATTTATTTTGAGGATAAGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTAGTGAGATAAAAAAACTTAAGGGTGCTTTGAAATGTTTCAACGTTAAACGCGAATGTTTTTAATCACGATTTGATGATCGATGATGTTTAAGAAACGATCAGTTGATTCCTAGAAAGTAAATTTTGAGAGCTACATTATAAATAATTAAACACTTCGCGGGCAAACAAGCGCTAAATATTGAATATATATACGTATGACTATAAAAATAAGAAGATTCGTATCATCTTGAAAAATTTAAAGAACTGTCACCGAAGTGTTATGTCATATCCGCCCAAAAACCCGTCAATCCAATCAGAAAGTAATATCGTCGTACATGTTGAAAAATTTGAGAAATAAGTACTTTAAGATACTTTCTGAACTCATCGTTTCTTCGATCGATGAATCAAATGGATAAATAATCGATCAAATCGG]


>consensus_687#0 GCTCGTCGATCGAGAAATAAGATCAAGCTTGACTAATTGTGATGATAATCTCGGACGAAG TTATTTATTTTGAGGATAAGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGCTAGTGAGATAAAAAAACTTAAGGGTGCTTTGAAATGTTTCAACGTTAAACGC GAATGTTTTTAATCACGATTTGATGATCGATGATGTTTAAGAAACGATCAGTTGATTCCT AGAAAGTAAATTTTGAGAGCTACATTATAAATAATTAAACACTTCGCGGGCAAACAAGCG CTAAATATTGAATATATATACGTATGACTATAAAAATAAGAAGATTCGTATCATCTTGAA AAATTTAAAGAACTGTCACCGAAGTGTTATGTCATATCCGCCCAAAAACCCGTCAATCCA ATCAGAAAGTAATATCGTCGTACATGTTGAAAAATTTGAGAAATAAGTACTTTAAGATAC TTTCTGAACTCATCGTTTCTTCGATCGATGAATCAAATGGATAAATAATCGATCAAATCG G



consensusID : consensus_687#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 497
fasta sequence
                              [TCAAGCTTGACTAATTGTGATGATAATCTCGGACGAAGTTATTTATTTTGAGGATAAGGGGAGAGAGAGAGAGAGAGAGAGAGCTAGTGAGATAAAAAAACTTAAGGGTGCTTTGAAATGTTTCAACGTTAAACGCGAATGTTTTTAATCACGATTTGATGATCGATGATGTTTAAGAAACGATCAGTTGATTCCTAGAAAGTAAATTTTGAGAGCTACATTATAAATAATTAAACACTTCGCGGGCAAACAAGCGCTAAATATTGAATATATATACGTATGACTATAAAAATAAGAAGATTCGTATCATCTTGAAAAATTTAAAGAACTGTCACCGAAGTGTTATGTCATATCCGCCCAAAAACCCGTCAATCCAATCAGAAAGTAATATCGTCGTACATGTTGAAAAATTTGAGAAATAAGTACTTTAAGATACTTTCTGAACTCATCGTTTCTTCGATCGATGAATCAAATGGATAAATAATCGATCAAATCGG]

[+] EMBL BI507748             [TCAAGCTTGACTAATTGTGATGATAATCTCGGACGAAGTTATTTATTTTGAGGATAAGGGGAGAGAGAGAGAGAGAGAGAGAGCTAGTGAGATAAAAAAACTTAAGGGTGCTTTGAAATGTTTCAACGTTAAACGCGAATGTTTTTAATCACGATTTGATGATCGATGATGTTTAAGAAACGATCAGTTGATTCCTAGAAAGTAAATTTTGAGAGCTACATTATAAATAATTAAACACTTCGCGGGCAAACAAGCGCTAAATATTGAATATATATACGTATGACTATAAAAATAAGAAGATTCGTATCATCTTGAAAAATTTAAAGAACTGTCACCGAAGTGTTATGTCATATCCGCCCAAAAACCCGTCAATCCAATCAGAAAGTAATATCGTCGTACATGTTGAAAAATTTGAGAAATAAGTACTTTAAGATACTTTCTGAACTCATCGTTTCTTCGATCGATGAATCAAATGGATAAATAATCGATCAAATCGG]


>consensus_687#1 TCAAGCTTGACTAATTGTGATGATAATCTCGGACGAAGTTATTTATTTTGAGGATAAGGG GAGAGAGAGAGAGAGAGAGAGAGCTAGTGAGATAAAAAAACTTAAGGGTGCTTTGAAATG TTTCAACGTTAAACGCGAATGTTTTTAATCACGATTTGATGATCGATGATGTTTAAGAAA CGATCAGTTGATTCCTAGAAAGTAAATTTTGAGAGCTACATTATAAATAATTAAACACTT CGCGGGCAAACAAGCGCTAAATATTGAATATATATACGTATGACTATAAAAATAAGAAGA TTCGTATCATCTTGAAAAATTTAAAGAACTGTCACCGAAGTGTTATGTCATATCCGCCCA AAAACCCGTCAATCCAATCAGAAAGTAATATCGTCGTACATGTTGAAAAATTTGAGAAAT AAGTACTTTAAGATACTTTCTGAACTCATCGTTTCTTCGATCGATGAATCAAATGGATAA ATAATCGATCAAATCGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_687#0      GCTCGTCGATCGAGAAATAAGATCAAGCTTGACTAATTGTGATGATAATCTCGGACGAAG 60
consensus_687#1      ----------------------TCAAGCTTGACTAATTGTGATGATAATCTCGGACGAAG 38
                                           **************************************

consensus_687#0      TTATTTATTTTGAGGATAAGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA 120
consensus_687#1      TTATTTATTTTGAGGATAAGGGGAGAGAGAGAGAGAGAGAGAGAG--------------- 83
                     *********************************************               

consensus_687#0      GAGAGAGCTAGTGAGATAAAAAAACTTAAGGGTGCTTTGAAATGTTTCAACGTTAAACGC 180
consensus_687#1      -------CTAGTGAGATAAAAAAACTTAAGGGTGCTTTGAAATGTTTCAACGTTAAACGC 136
                            *****************************************************

consensus_687#0      GAATGTTTTTAATCACGATTTGATGATCGATGATGTTTAAGAAACGATCAGTTGATTCCT 240
consensus_687#1      GAATGTTTTTAATCACGATTTGATGATCGATGATGTTTAAGAAACGATCAGTTGATTCCT 196
                     ************************************************************

consensus_687#0      AGAAAGTAAATTTTGAGAGCTACATTATAAATAATTAAACACTTCGCGGGCAAACAAGCG 300
consensus_687#1      AGAAAGTAAATTTTGAGAGCTACATTATAAATAATTAAACACTTCGCGGGCAAACAAGCG 256
                     ************************************************************

consensus_687#0      CTAAATATTGAATATATATACGTATGACTATAAAAATAAGAAGATTCGTATCATCTTGAA 360
consensus_687#1      CTAAATATTGAATATATATACGTATGACTATAAAAATAAGAAGATTCGTATCATCTTGAA 316
                     ************************************************************

consensus_687#0      AAATTTAAAGAACTGTCACCGAAGTGTTATGTCATATCCGCCCAAAAACCCGTCAATCCA 420
consensus_687#1      AAATTTAAAGAACTGTCACCGAAGTGTTATGTCATATCCGCCCAAAAACCCGTCAATCCA 376
                     ************************************************************

consensus_687#0      ATCAGAAAGTAATATCGTCGTACATGTTGAAAAATTTGAGAAATAAGTACTTTAAGATAC 480
consensus_687#1      ATCAGAAAGTAATATCGTCGTACATGTTGAAAAATTTGAGAAATAAGTACTTTAAGATAC 436
                     ************************************************************

consensus_687#0      TTTCTGAACTCATCGTTTCTTCGATCGATGAATCAAATGGATAAATAATCGATCAAATCG 540
consensus_687#1      TTTCTGAACTCATCGTTTCTTCGATCGATGAATCAAATGGATAAATAATCGATCAAATCG 496
                     ************************************************************

consensus_687#0      G 541
consensus_687#1      G 497
                     *




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)