These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_687#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 541 fasta sequence [GCTCGTCGATCGAGAAATAAGATCAAGCTTGACTAATTGTGATGATAATCTCGGACGAAGTTATTTATTTTGAGGATAAGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTAGTGAGATAAAAAAACTTAAGGGTGCTTTGAAATGTTTCAACGTTAAACGCGAATGTTTTTAATCACGATTTGATGATCGATGATGTTTAAGAAACGATCAGTTGATTCCTAGAAAGTAAATTTTGAGAGCTACATTATAAATAATTAAACACTTCGCGGGCAAACAAGCGCTAAATATTGAATATATATACGTATGACTATAAAAATAAGAAGATTCGTATCATCTTGAAAAATTTAAAGAACTGTCACCGAAGTGTTATGTCATATCCGCCCAAAAACCCGTCAATCCAATCAGAAAGTAATATCGTCGTACATGTTGAAAAATTTGAGAAATAAGTACTTTAAGATACTTTCTGAACTCATCGTTTCTTCGATCGATGAATCAAATGGATAAATAATCGATCAAATCGG] [+] EMBL BI508223 [GCTCGTCGATCGAGAAATAAGATCAAGCTTGACTAATTGTGATGATAATCTCGGACGAAGTTATTTATTTTGAGGATAAGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTAGTGAGATAAAAAAACTTAAGGGTGCTTTGAAATGTTTCAACGTTAAACGCGAATGTTTTTAATCACGATTTGATGATCGATGATGTTTAAGAAACGATCAGTTGATTCCTAGAAAGTAAATTTTGAGAGCTACATTATAAATAATTAAACACTTCGCGGGCAAACAAGCGCTAAATATTGAATATATATACGTATGACTATAAAAATAAGAAGATTCGTATCATCTTGAAAAATTTAAAGAACTGTCACCGAAGTGTTATGTCATATCCGCCCAAAAACCCGTCAATCCAATCAGAAAGTAATATCGTCGTACATGTTGAAAAATTTGAGAAATAAGTACTTTAAGATACTTTCTGAACTCATCGTTTCTTCGATCGATGAATCAAATGGATAAATAATCGATCAA ] [+] EMBL BI508729 [ AGCTTGACTAATTGTGATGATAATCTCGGACGAAGTTATTTATTTTGAGGATAAGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTAGTGAGATAAAAAAACTTAAGGGTGCTTTGAAATGTTTCAACGTTAAACGCGAATGTTTTTAATCACGATTTGATGATCGATGATGTTTAAGAAACGATCAGTTGATTCCTAGAAAGTAAATTTTGAGAGCTACATTATAAATAATTAAACACTTCGCGGGCAAACAAGCGCTAAATATTGAATATATATACGTATGACTATAAAAATAAGAAGATTCGTATCATCTTGAAAAATTTAAAGAACTGTCACCGAAGTGTTATGTCATATCCGCCCAAAAACCCGTCAATCCAATCAGAAAGTAATATCGTCGTACATGTTGAAAAATTTGAGAAATAAGTACTTTAAGATACTTTCTGAACTCATCGTTTCTTCGATCGATGAATCAAATGGATAAATAATCGATCAAATCGG] consensusID : consensus_687#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 497 fasta sequence [TCAAGCTTGACTAATTGTGATGATAATCTCGGACGAAGTTATTTATTTTGAGGATAAGGGGAGAGAGAGAGAGAGAGAGAGAGCTAGTGAGATAAAAAAACTTAAGGGTGCTTTGAAATGTTTCAACGTTAAACGCGAATGTTTTTAATCACGATTTGATGATCGATGATGTTTAAGAAACGATCAGTTGATTCCTAGAAAGTAAATTTTGAGAGCTACATTATAAATAATTAAACACTTCGCGGGCAAACAAGCGCTAAATATTGAATATATATACGTATGACTATAAAAATAAGAAGATTCGTATCATCTTGAAAAATTTAAAGAACTGTCACCGAAGTGTTATGTCATATCCGCCCAAAAACCCGTCAATCCAATCAGAAAGTAATATCGTCGTACATGTTGAAAAATTTGAGAAATAAGTACTTTAAGATACTTTCTGAACTCATCGTTTCTTCGATCGATGAATCAAATGGATAAATAATCGATCAAATCGG] [+] EMBL BI507748 [TCAAGCTTGACTAATTGTGATGATAATCTCGGACGAAGTTATTTATTTTGAGGATAAGGGGAGAGAGAGAGAGAGAGAGAGAGCTAGTGAGATAAAAAAACTTAAGGGTGCTTTGAAATGTTTCAACGTTAAACGCGAATGTTTTTAATCACGATTTGATGATCGATGATGTTTAAGAAACGATCAGTTGATTCCTAGAAAGTAAATTTTGAGAGCTACATTATAAATAATTAAACACTTCGCGGGCAAACAAGCGCTAAATATTGAATATATATACGTATGACTATAAAAATAAGAAGATTCGTATCATCTTGAAAAATTTAAAGAACTGTCACCGAAGTGTTATGTCATATCCGCCCAAAAACCCGTCAATCCAATCAGAAAGTAATATCGTCGTACATGTTGAAAAATTTGAGAAATAAGTACTTTAAGATACTTTCTGAACTCATCGTTTCTTCGATCGATGAATCAAATGGATAAATAATCGATCAAATCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_687#0 GCTCGTCGATCGAGAAATAAGATCAAGCTTGACTAATTGTGATGATAATCTCGGACGAAG 60 consensus_687#1 ----------------------TCAAGCTTGACTAATTGTGATGATAATCTCGGACGAAG 38 ************************************** consensus_687#0 TTATTTATTTTGAGGATAAGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA 120 consensus_687#1 TTATTTATTTTGAGGATAAGGGGAGAGAGAGAGAGAGAGAGAGAG--------------- 83 ********************************************* consensus_687#0 GAGAGAGCTAGTGAGATAAAAAAACTTAAGGGTGCTTTGAAATGTTTCAACGTTAAACGC 180 consensus_687#1 -------CTAGTGAGATAAAAAAACTTAAGGGTGCTTTGAAATGTTTCAACGTTAAACGC 136 ***************************************************** consensus_687#0 GAATGTTTTTAATCACGATTTGATGATCGATGATGTTTAAGAAACGATCAGTTGATTCCT 240 consensus_687#1 GAATGTTTTTAATCACGATTTGATGATCGATGATGTTTAAGAAACGATCAGTTGATTCCT 196 ************************************************************ consensus_687#0 AGAAAGTAAATTTTGAGAGCTACATTATAAATAATTAAACACTTCGCGGGCAAACAAGCG 300 consensus_687#1 AGAAAGTAAATTTTGAGAGCTACATTATAAATAATTAAACACTTCGCGGGCAAACAAGCG 256 ************************************************************ consensus_687#0 CTAAATATTGAATATATATACGTATGACTATAAAAATAAGAAGATTCGTATCATCTTGAA 360 consensus_687#1 CTAAATATTGAATATATATACGTATGACTATAAAAATAAGAAGATTCGTATCATCTTGAA 316 ************************************************************ consensus_687#0 AAATTTAAAGAACTGTCACCGAAGTGTTATGTCATATCCGCCCAAAAACCCGTCAATCCA 420 consensus_687#1 AAATTTAAAGAACTGTCACCGAAGTGTTATGTCATATCCGCCCAAAAACCCGTCAATCCA 376 ************************************************************ consensus_687#0 ATCAGAAAGTAATATCGTCGTACATGTTGAAAAATTTGAGAAATAAGTACTTTAAGATAC 480 consensus_687#1 ATCAGAAAGTAATATCGTCGTACATGTTGAAAAATTTGAGAAATAAGTACTTTAAGATAC 436 ************************************************************ consensus_687#0 TTTCTGAACTCATCGTTTCTTCGATCGATGAATCAAATGGATAAATAATCGATCAAATCG 540 consensus_687#1 TTTCTGAACTCATCGTTTCTTCGATCGATGAATCAAATGGATAAATAATCGATCAAATCG 496 ************************************************************ consensus_687#0 G 541 consensus_687#1 G 497 * |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |