Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 734 cluster # 734       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_734#0 length = 556 sequences # 1  
 consensus_734#1 length = 515 sequences # 2  
consensusID : consensus_734#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 556
fasta sequence 
                              [TACCGAGGGACCGCGTGGAACGAGGGGCAAAATCCTTCTTCCTTTCCTCTTCTGATAAAAATATATTACGTTATTATTTACATTATCGTATATCCCGACCGAATCGGAACGATTCTAGACGATATCTAGACTTAGAGTTTAGAGAGGGATTTTCGGCTGGCTCTCCGTAAGCTTCCTCCGTATTATTTGGTTCAGAAGGATCGGGACTGTTTGTATTAAGCCCGCATCGGCGTAGAACGATGTGGTCGCTACTATACTTGTGGCATTAGTAAAAATTAAGATCACGTTTTAGGGAATGAAATCGATACACGTGTCGTGCCACGTAGGTGATATATATAATATATATATATATATATATATACATATTCGATTTGCTGTACTCGCATTTTCATCGTTCGTTTATTCGATCGTAATATTTCCCAAAGATTTTTACCATACATGAGTTGAACGAATGAAACTTAGATTCATCGCCATTTTCAGACGCGATATATATATATATATACGTATATGTCGTTCATGCGAAAGAAAATAGAAGAAAAAAAAAATATATTTCTAA]

[+] EMBL BI505687             [TACCGAGGGACCGCGTGGAACGAGGGGCAAAATCCTTCTTCCTTTCCTCTTCTGATAAAAATATATTACGTTATTATTTACATTATCGTATATCCCGACCGAATCGGAACGATTCTAGACGATATCTAGACTTAGAGTTTAGAGAGGGATTTTCGGCTGGCTCTCCGTAAGCTTCCTCCGTATTATTTGGTTCAGAAGGATCGGGACTGTTTGTATTAAGCCCGCATCGGCGTAGAACGATGTGGTCGCTACTATACTTGTGGCATTAGTAAAAATTAAGATCACGTTTTAGGGAATGAAATCGATACACGTGTCGTGCCACGTAGGTGATATATATAATATATATATATATATATATATACATATTCGATTTGCTGTACTCGCATTTTCATCGTTCGTTTATTCGATCGTAATATTTCCCAAAGATTTTTACCATACATGAGTTGAACGAATGAAACTTAGATTCATCGCCATTTTCAGACGCGATATATATATATATATACGTATATGTCGTTCATGCGAAAGAAAATAGAAGAAAAAAAAAATATATTTCTAA]




>consensus_734#0
TACCGAGGGACCGCGTGGAACGAGGGGCAAAATCCTTCTTCCTTTCCTCTTCTGATAAAA
ATATATTACGTTATTATTTACATTATCGTATATCCCGACCGAATCGGAACGATTCTAGAC
GATATCTAGACTTAGAGTTTAGAGAGGGATTTTCGGCTGGCTCTCCGTAAGCTTCCTCCG
TATTATTTGGTTCAGAAGGATCGGGACTGTTTGTATTAAGCCCGCATCGGCGTAGAACGA
TGTGGTCGCTACTATACTTGTGGCATTAGTAAAAATTAAGATCACGTTTTAGGGAATGAA
ATCGATACACGTGTCGTGCCACGTAGGTGATATATATAATATATATATATATATATATAT
ACATATTCGATTTGCTGTACTCGCATTTTCATCGTTCGTTTATTCGATCGTAATATTTCC
CAAAGATTTTTACCATACATGAGTTGAACGAATGAAACTTAGATTCATCGCCATTTTCAG
ACGCGATATATATATATATATACGTATATGTCGTTCATGCGAAAGAAAATAGAAGAAAAA
AAAAATATATTTCTAA

consensusID : consensus_734#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 515
fasta sequence 
                              [AAAAAAAAAGAAAAAGAAAAAGAAAAAAAGTTTATAAATAGGCCAAGTTTTTAGAAATTTTTAACGAAACGAGCGAGAAAAAAGAAAAGGTGGGAGAGAGAAAGGTAAACGTAAGTGGAGGAGAGAAATACCGAGGGACCGCGTGGAACGAGGGGCAAAATCCTTCTTCCTTTCCTCTTCTGATAAAAATATATTACGTTATTATTTACATTATCGTATATCCCGACCGAATCGGAACGATTCTAGACGATATCTAGACTTAGAGTTTAGAGAGGGATTTTCGGCTGGCTCTCCGTAAGCTTCCTCCGTATTATTTGGTTCNNNAGGATCGGGACTGTTTGTATTAAGCCCGCATCGGCGTAGAACGATGTGGTCGCTACTATACTTGTGGCATTAGTAAAAATTAAGATCACGTTTTAGGGAATGAAATCGATACACGTGTCGTGCCACGTAGNNNATATATATAATATATATATATATATATATATATATATATATATATATATATATATATA]

[+] EMBL BI504473             [AAAAAAAAAGAAAAAGAAAAAGAAAAAAAGTTTATAAATAGGCCAAGTTTTTAGAAATTTTTAACGAAACGAGCGAGAAAAAAGAAAAGGTGGGAGAGAGAAAGGTAAACGTAAGTGGAGGAGAGAAATACCGAGGGACCGCGTGGAACGAGGGGCAAAATCCTTCTTCCTTTCCTCTTCTGATAAAAATATATTACGTTATTATTTACATTATCGTATATCCCGACCGAATCGGAACGATTCTAGACGATATCTAGACTTAGAGTTTAGAGAGGGATTTTCGGCTGGCTCTCCGTAAGCTTCCTCCGTATTATTTGGTTCNNNAGGATCGGGACTGTTTGTATTAAGCCCGCATCGGCGTAGAACGATGTGGTCGCTACTATACTTGTGGCATTAGTAAAAATTAAGATCACGTTTTAGGGAATGAAATCGATACACGTGTCGTGCCACGTAGNNNATATATATAATATATATATATATATATATATATATATATATATATATATATATATATA]
[+] EMBL BI507526             [                                                                                                                                                                                                                                                 TCTAGACGATATCTAGACTTAGAGTTTAGAGAGGGATTTTCGGCTGGCTCTCCGTAAGCTTCCTCCGTATTATTTGGTTCAGAAGGATCGGGACTGTTTGTATTAAGCCCGCATCGGCGTAGAACGATGTGGTCGCTACTATACTTGTGGCATTAGTAAAAATTAAGATCACGTTTTAGGGAATGAAATCGATACACGTGTCGTGCCACGTAGGTGATATATATAATATATATATATATATATATATATATATATATATATATATAT       ]




>consensus_734#1
AAAAAAAAAGAAAAAGAAAAAGAAAAAAAGTTTATAAATAGGCCAAGTTTTTAGAAATTT
TTAACGAAACGAGCGAGAAAAAAGAAAAGGTGGGAGAGAGAAAGGTAAACGTAAGTGGAG
GAGAGAAATACCGAGGGACCGCGTGGAACGAGGGGCAAAATCCTTCTTCCTTTCCTCTTC
TGATAAAAATATATTACGTTATTATTTACATTATCGTATATCCCGACCGAATCGGAACGA
TTCTAGACGATATCTAGACTTAGAGTTTAGAGAGGGATTTTCGGCTGGCTCTCCGTAAGC
TTCCTCCGTATTATTTGGTTCNNNAGGATCGGGACTGTTTGTATTAAGCCCGCATCGGCG
TAGAACGATGTGGTCGCTACTATACTTGTGGCATTAGTAAAAATTAAGATCACGTTTTAG
GGAATGAAATCGATACACGTGTCGTGCCACGTAGNNNATATATATAATATATATATATAT
ATATATATATATATATATATATATATATATATATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_734#0      ------------------------------------------------------------
consensus_734#1      AAAAAAAAAGAAAAAGAAAAAGAAAAAAAGTTTATAAATAGGCCAAGTTTTTAGAAATTT 60
                                                                                 

consensus_734#0      ------------------------------------------------------------
consensus_734#1      TTAACGAAACGAGCGAGAAAAAAGAAAAGGTGGGAGAGAGAAAGGTAAACGTAAGTGGAG 120
                                                                                 

consensus_734#0      --------TACCGAGGGACCGCGTGGAACGAGGGGCAAAATCCTTCTTCCTTTCCTCTTC 52
consensus_734#1      GAGAGAAATACCGAGGGACCGCGTGGAACGAGGGGCAAAATCCTTCTTCCTTTCCTCTTC 180
                             ****************************************************

consensus_734#0      TGATAAAAATATATTACGTTATTATTTACATTATCGTATATCCCGACCGAATCGGAACGA 112
consensus_734#1      TGATAAAAATATATTACGTTATTATTTACATTATCGTATATCCCGACCGAATCGGAACGA 240
                     ************************************************************

consensus_734#0      TTCTAGACGATATCTAGACTTAGAGTTTAGAGAGGGATTTTCGGCTGGCTCTCCGTAAGC 172
consensus_734#1      TTCTAGACGATATCTAGACTTAGAGTTTAGAGAGGGATTTTCGGCTGGCTCTCCGTAAGC 300
                     ************************************************************

consensus_734#0      TTCCTCCGTATTATTTGGTTCAGAAGGATCGGGACTGTTTGTATTAAGCCCGCATCGGCG 232
consensus_734#1      TTCCTCCGTATTATTTGGTTCNNNAGGATCGGGACTGTTTGTATTAAGCCCGCATCGGCG 360
                     *********************   ************************************

consensus_734#0      TAGAACGATGTGGTCGCTACTATACTTGTGGCATTAGTAAAAATTAAGATCACGTTTTAG 292
consensus_734#1      TAGAACGATGTGGTCGCTACTATACTTGTGGCATTAGTAAAAATTAAGATCACGTTTTAG 420
                     ************************************************************

consensus_734#0      GGAATGAAATCGATACACGTGTCGTGCCACGTAGGTGATATATATAATATATATATATAT 352
consensus_734#1      GGAATGAAATCGATACACGTGTCGTGCCACGTAGNNNATATATATAATATATATATATAT 480
                     **********************************   ***********************

consensus_734#0      ATATATATACATATTCGATTTGCTGTACTCGCATTTTCATCGTTCGTTTATTCGATCGTA 412
consensus_734#1      ATATATATATATATATATATATATATATATATATA------------------------- 515
                     ********* ****     *   * **     **                          

consensus_734#0      ATATTTCCCAAAGATTTTTACCATACATGAGTTGAACGAATGAAACTTAGATTCATCGCC 472
consensus_734#1      ------------------------------------------------------------
                                                                                 

consensus_734#0      ATTTTCAGACGCGATATATATATATATATACGTATATGTCGTTCATGCGAAAGAAAATAG 532
consensus_734#1      ------------------------------------------------------------
                                                                                 

consensus_734#0      AAGAAAAAAAAAATATATTTCTAA 556
consensus_734#1      ------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)