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Apis mellifera
cluster # 747 cluster # 747       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_747#0 length = 571 sequences # 2  
consensus_747#1 length = 273 sequences # 1  

consensusID : consensus_747#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 571
fasta sequence
                              [TTTTTTTTTTATCGTTTTCGGATTTTAATATCGTGCTTTTGGAAATAAATAACAATGTCTTTCAGTAAAATAATTGTCCGGTCATTTTTCAGTAGTACTGCTGCTCAACAATTGGTTAAGCCTCCGATTCAAGTATTTGGCATAGGAGGACGATATGCTACAGCACTTTATTCAGCAGGTTCAAAACAAAAAACATTAAATAATATTGAAAAAGATCTTCTTAAATTTCAAGATCTCATGAAGCAAGATCAAAAATTGAATGAATTTGTGAAAAATCCAGCAATAAAAAGAAAAGAGAAAGTAGAAGGACTTAAATCAATTGGAGGAAAAATTAGTCTGAAAAGTGAAACAATAAATTTATTAGNTTTATTAGCAGAAAATGGTCGACTTTCACAAATTAACAATGTAATTAATACATTTAAATTATTAATGGCTGCTACTAGAGGTGAAGTTCCTTGTGAAGTAGTAACTGCAAAACCTCTTGATGCTGAAATGACATCTAAGCTTCAAACAGCTTTGAAAGGATTTTTAAGTAAAGGTCAATCTATTATGCTTACTGCAAAAGTTGATC]

[+] EMBL BI504372             [TTTTTTTTTTATCGTTTTCGGATTTTAATATCGTGCTTTTGGAAATAAATAACAATGTCTTTCAGTAAAATAATTGTCCGGTCATTTTTCAGTAGTACTGCTGCTCAACAATTGGTTAAGCCTCCGATTCAAGTATTTGGCATAGGAGGACGATATGCTACAGCACTTTATTCAGCAGGTTCAAAACAAAAAACATTAAATAATATTGAAAAAGATCTTCTTAAATTTCAAGATCTCATGAAGCAAGATCAAAAATTGAATGAATTTGTGAAAAATCCAGCAATAAAAAGAAAAGAGAAAGTAGAAGGACTTAAATCAATTGGAGGAAAAATTAGTCTGAAAAGTGAAACAATAAATTTATTAGNTTTATTAGCAGAAAATGGTCGACTTTCACAAATTAACAATGTAATTAATACATTTAAATTA                                                                                                                                                 ]
[+] EMBL BI512219             [                                                                                                      GCTCAACAATTGGTTAAGCCTCCGATTCAAGTATTTGGCATAGGAGGACGATATGCTACAGCACTTTATTCAGCAGGTTCAAAACAAAAAACATTAAATAATATTGAAAAAGATCTTCTTAAATTTCAAGATCTCATGAAGCAAGATCAAAAATTGAATGAATTTGTGAAAAATCCAGCAATAAAAAGAAAAGAGAAAGTAGAAGGACTTAAATCAATTGGAGGAAAAATTAGTCTGAAAAGTGAAACAATAAATTTATTAGCTTTATTAGCAGAAAATGGTCGACTTTCACAAATTAACAATGTAATTAATACATTTAAATTATTAATGGCTGCTACTAGAGGTGAAGTTCCTTGTGAAGTAGTAACTGCAAAACCTCTTGATGCTGAAATGACATCTAAGCTTCAAACAGCTTTGAAAGGATTTTTAAGTAAAGGTCAATCTATTATGCTTACTGCAAAAGTTGATC]


>consensus_747#0 TTTTTTTTTTATCGTTTTCGGATTTTAATATCGTGCTTTTGGAAATAAATAACAATGTCT TTCAGTAAAATAATTGTCCGGTCATTTTTCAGTAGTACTGCTGCTCAACAATTGGTTAAG CCTCCGATTCAAGTATTTGGCATAGGAGGACGATATGCTACAGCACTTTATTCAGCAGGT TCAAAACAAAAAACATTAAATAATATTGAAAAAGATCTTCTTAAATTTCAAGATCTCATG AAGCAAGATCAAAAATTGAATGAATTTGTGAAAAATCCAGCAATAAAAAGAAAAGAGAAA GTAGAAGGACTTAAATCAATTGGAGGAAAAATTAGTCTGAAAAGTGAAACAATAAATTTA TTAGNTTTATTAGCAGAAAATGGTCGACTTTCACAAATTAACAATGTAATTAATACATTT AAATTATTAATGGCTGCTACTAGAGGTGAAGTTCCTTGTGAAGTAGTAACTGCAAAACCT CTTGATGCTGAAATGACATCTAAGCTTCAAACAGCTTTGAAAGGATTTTTAAGTAAAGGT CAATCTATTATGCTTACTGCAAAAGTTGATC



consensusID : consensus_747#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 273
fasta sequence
                              [TGGAATAATTTATTGTTTAATGACATACACATTGTTCATAAATTATTCTATATGAGTACTTTAACTTTGCTCATTTTACTGAATGTTATAAAAAGTAATCACAATGTTTCANNAATAATATCAAAATATTTTTTTTATTTTACTACNAACACTCATANNNATATATTTATCACCTATTGATATAATCATACCTCCCATAATGGAAGGATCAACTTTTGCAGTAAGCATAATAAATTGACCTTTACTTAAAAATCCTTTCAAAGCTGTTTGAAG]

[+] EMBL BI511177             [TGGAATAATTTATTGTTTAATGACATACACATTGTTCATAAATTATTCTATATGAGTACTTTAACTTTGCTCATTTTACTGAATGTTATAAAAAGTAATCACAATGTTTCANNAATAATATCAAAATATTTTTTTTATTTTACTACNAACACTCATANNNATATATTTATCACCTATTGATATAATCATACCTCCCATAATGGAAGGATCAACTTTTGCAGTAAGCATAATAAATTGACCTTTACTTAAAAATCCTTTCAAAGCTGTTTGAAG]


>consensus_747#1 TGGAATAATTTATTGTTTAATGACATACACATTGTTCATAAATTATTCTATATGAGTACT TTAACTTTGCTCATTTTACTGAATGTTATAAAAAGTAATCACAATGTTTCANNAATAATA TCAAAATATTTTTTTTATTTTACTACNAACACTCATANNNATATATTTATCACCTATTGA TATAATCATACCTCCCATAATGGAAGGATCAACTTTTGCAGTAAGCATAATAAATTGACC TTTACTTAAAAATCCTTTCAAAGCTGTTTGAAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_747#0      TTTTTTTTTTATCGTTTTCGGATTTTAATATCGTGCTTTTGGAAATAAATAACAATGTCT 60
consensus_747#1      ------------------------------------------------------------
                                                                                 

consensus_747#0      TTCAGTAAAATAATTGTCCGGTCATTTTTCAGTAGTACTGCTGCTCAACAATTGGTTAAG 120
consensus_747#1      ------------------------------------------------------------
                                                                                 

consensus_747#0      CCTCCGATTCAAGTATTTGGCATAGGAGGACGATATGCTACAGCACTTTATTCAGCAGGT 180
consensus_747#1      ------------------------------------------------------------
                                                                                 

consensus_747#0      TCAAAACAAAAAACATTAAATAATATTGAAAAAGATCTTCTTAAATTTCAAGATCTCATG 240
consensus_747#1      ----------------------------------------------------------TG 2
                                                                               **

consensus_747#0      AAGCAAGATCAAAAATTGAATGAATTTGTGAAAAATCCAGCAATAAAAAGAAAAGAGAAA 300
consensus_747#1      GAATAA--TTTATTGTTTAATGA-CATACACATTGTTCATAAATTATTCTATATGAGTAC 59
                      *  **  *  *   ** *****   *    *   * **  *** *    * * *** * 

consensus_747#0      GTAGAAGGACTTAAATCAATTGGAGGAAAAATTAGTCTGAAAAGTGAAACAATAAATTTA 360
consensus_747#1      TT----TAACTTTGCTCATTTTACTGAA----TGTTATAAAAAGT--AATCACAA-TGTT 108
                      *      ****   *** **    ***    *  * * ******  **  * ** * * 

consensus_747#0      TTAGNTTTATTAGCAGAAAATGGTCGACTTTCACAAATTAACAATGTAATTAATACATTT 420
consensus_747#1      TCANNAATAATATCAAAATATTTTTTTTATTTTACTACNAACACTCATANNNATATATTT 168
                     * * *  ** ** ** ** **  *     **     *  **** *   *   *** ****

consensus_747#0      AAATTATTAATGGCTGCTACTAGAGGTGAAGTTCCTTGTGAAGTAGTAACTGCAAAACCT 480
consensus_747#1      A--TCACCTATTGATATAATCATACCTCCCATAATGGAAGGATCAACTTTTGCAGTAAGC 226
                     *  * *   ** * *   *  * *  *    *       * *  *     ****  *   

consensus_747#0      CTTGATGCTGAAATGACATCTAAGCTTCAAACAGCTTTGAAAGGATTTTTAAGTAAAGGT 540
consensus_747#1      ----ATAATAAATTGACCTTTA--CTTAAAAATCCTTTCAAAGCTGTTTGAAG------- 273
                         **  * ** **** * **  *** ***   **** ****   *** ***       

consensus_747#0      CAATCTATTATGCTTACTGCAAAAGTTGATC 571
consensus_747#1      -------------------------------
                                                    




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)