cluster # 766

These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 766 cluster # 766 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_766#0 length = 271 sequences # 2

consensus_766#1 length = 195 sequences # 1

consensusID : consensus_766#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 271
fasta sequence

                              [TTTGAGAACGAGCGAGGATCACTCGTCACGCGTGTATGCGTCACCAACTTAAGAATGAATATAAGTTTATCCGCGATATAGTTTACTCGTGTATATTACTATTATTATTATTATTATTATTATTATTAGTTTCTCTTTTTTTTTTTCGTTCATTATTGGTTTAACAGAGATGCATCCGTTTGGAGATTGTGCAGCTTATCATATACGACACTATATATACCGATCGATTATAGAAATATATTTTTTACTAGTTCCTTTACTAAAAAAAAAA]

[+] EMBL BI508087             [TTTGAGAACGAGCGAGGATCACTCGTCACGCGTGTATGCGTCACCAACTTAAGAATGAATATAAGTTTATCCGCGATATAGTTTACTCGTGTATATTACTATTATTATTATTATTATTATTATTATTAGTTTCTCTTTTTTTTTTTCGTTCATTATTGGTTTAACAGAGATGCATCCGTTTGGAGATTGTGCAGCTTATCATATACGACACTATATATACCGATCGATTATAGAAATATATTTTTTACTAGTTCCTTTACTAAAAAAAAAA]
[+] EMBL BI504927             [TTTGAGAACGAGCGAGGATCACTCGTCACGCGTGTATGCGTCACCAACTTAAGAATGAATATAAGTTTATCCGCGATATAGTTTACTCGTGTATATTACTATTATTATTATTATTATTATTATTATTAGTTTCTCTTTTTTTTTTTCGTTCATTATTGGTTTAACAGAGATGCATCCGTTTGGAGATTGTGCAGCTTATCATATACGACACTATATATACCGATCGATTATAGAAATATATTTTTTACTAGTTCCTTTACTAAAAAAAAAA]




>consensus_766#0
TTTGAGAACGAGCGAGGATCACTCGTCACGCGTGTATGCGTCACCAACTTAAGAATGAAT
ATAAGTTTATCCGCGATATAGTTTACTCGTGTATATTACTATTATTATTATTATTATTAT
TATTATTAGTTTCTCTTTTTTTTTTTCGTTCATTATTGGTTTAACAGAGATGCATCCGTT
TGGAGATTGTGCAGCTTATCATATACGACACTATATATACCGATCGATTATAGAAATATA
TTTTTTACTAGTTCCTTTACTAAAAAAAAAA

consensusID : consensus_766#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 195
fasta sequence

                              [TTTTTTTTGAGAACGAGCGAGGATCACTCGTCACGCGTGTACGCGTCACCAACTTAAGAATGAATATAAGTTTATCCGCGATATAGTTTACTCGTGTATATTACTATTATTATTATTATTATTATTATTATTATCGCCATCATGATCACCATCCTACGGAAAACTGCATTAAAAATGATTAGAAACGAGCCACGA]

[-] EMBL BI513294             [TTTTTTTTGAGAACGAGCGAGGATCACTCGTCACGCGTGTACGCGTCACCAACTTAAGAATGAATATAAGTTTATCCGCGATATAGTTTACTCGTGTATATTACTATTATTATTATTATTATTATTATTATTATCGCCATCATGATCACCATCCTACGGAAAACTGCATTAAAAATGATTAGAAACGAGCCACGA]




>consensus_766#1
TTTTTTTTGAGAACGAGCGAGGATCACTCGTCACGCGTGTACGCGTCACCAACTTAAGAA
TGAATATAAGTTTATCCGCGATATAGTTTACTCGTGTATATTACTATTATTATTATTATT
ATTATTATTATTATCGCCATCATGATCACCATCCTACGGAAAACTGCATTAAAAATGATT
AGAAACGAGCCACGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_766#0      -----TTTGAGAACGAGCGAGGATCACTCGTCACGCGTGTATGCGTCACCAACTTAAGAA 55
consensus_766#1      TTTTTTTTGAGAACGAGCGAGGATCACTCGTCACGCGTGTACGCGTCACCAACTTAAGAA 60
                          ************************************ ******************

consensus_766#0      TGAATATAAGTTTATCCGCGATATAGTTTACTCGTGTATATTACTATTATTATTATTATT 115
consensus_766#1      TGAATATAAGTTTATCCGCGATATAGTTTACTCGTGTATATTACTATTATTATTATTATT 120
                     ************************************************************

consensus_766#0      ATTATTATTATTAGTTTCTCTTTTTTTTTTTCGTTCATTATTGGTTTAACAGAGATGCAT 175
consensus_766#1      ATTATTATTATTA-----TCGCCATCATGATCAC-CATCCTACGGAAAACTGCATTAAAA 174
                     *************     **    *  *  **   ***  *  *   *** *   *  * 

consensus_766#0      CCGTTTGGAGATTGTGCAGCTTATCATATACGACACTATATATACCGATCGATTATAGAA 235
consensus_766#1      ATGATTAGAAAC-GAGCCACGA-------------------------------------- 195
                       * ** ** *  * **  *                                        

consensus_766#0      ATATATTTTTTACTAGTTCCTTTACTAAAAAAAAAA 271
consensus_766#1      ------------------------------------

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)