These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_786#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 998 fasta sequence [ACCGAGTCGATCAACTTCAAGGACGCCGTGTCCAACAGACTGTTGATATCCGAGAGAGGCAGCGACCCGAGAATACCCGCCCTCACCAGGTACAAGCAGAGTAACAGCATAGGCGTGCTCGACATCACGAACAACAAAACTCTTCCCTGGCTGCAATCCAAGCTGGAAAGTTTGATCACCAAGTACCACGTGGACTCGTTCTACCTCGACCTGGGTACCGCCCAGGACATGCCCCACTACTACAAATGCGGCCAGCCGTTGATCAACCCGGATCATTACAAAACCATGTTCACGAGGTCGATATTGGGATCGGTTCCCGTGATCGGCGTCTCGGGGGCGATCTCCAGGCCTCGAGCCCCCGTCTTCGTCTCCCTTCCCCCGTTCTCCTCCTCGTGGAAGGCGATCAAGACCGTGATACCGACGATTCTCACCTACGGTATACTCGGTTACCCGTTCATCATGCCGGGCGCGGTCGNCGGGGACGTGGCCCTCCCCATGTCCGACAACAACCCGGACAACGACTTCGAGGTGAGCCTGCCCGACAAGGAGCTGTACGTCAGATGGTTGCAACTGTCCACCTTCCTCCCCGTCATACGTTTCACCCATCTGCCGAGCAAATACTCGGACGATTCCGTGCTCGAGATAGCGAAGAGGTTGACGAGCCTCAGACAGAAAACGGTCACTCCTCTTCTCAAGAAATACGCGAACGAGACCCTGGACACCGGCCTGCCCATCATACGACCTTTGTGGATGCTAGACCCGACCGATCCCGCTTGCCTGGTTGTCTACGACGAGTTTTCCGTGGGGGAGGAGCTGATCGTCGCCCCCATCCTTCACTCCGGGAGCAGGCAGAGGGAGATCTACTTGCCTGCCGGCGTTTGGAGGGACGGGATCGACGGTAGCCTGAGGAAGGGCTCCAGATGGATCCACAATTACAGGGTTGCCGAGGACAAGGTCGCGTATTTCGTCAAGATACCTGACAACACGAGATTTTAATT] [+] EMBL BI503977 [ACCGAGTCGATCAACTTCAAGGACGCCGTGTCCAACAGACTGTTGATATCCGAGAGAGGCAGCGACCCGAGAATACCCGCCCTCACCAGGTACAAGCAGAGTAACAGCATAGGCGTGCTCGACATCACGAACAACAAAACTCTTCCCTGGCTGCAATCCAAGCTGGAAAGTTTGATCACCAAGTACCACGTGGACTCGTTCTACCTCGACCTGGGTACCGCCCAGGACATGCCCCACTACTACAAATGCGGCCAGCCGTTGATCAACCCGGATCATTACAAAACCATGTTCACGAGGTCGATATTGGGATCGGTTCCCGTGATCGGCGTCTCGGGGGCGATCTCCAGGCCTCGAGCCCCCGTCTTCGTCTCCCTTCCCCCGTTCTCCTCCTCGTGGAAGGCGATCAAGACCGTGATACCGACGATTCTCACCTACGGTATACTCGGTTACCCGTTCATCATGCCGGGCGCGGTCGNCGGGGACGTGGCCCTCCCCATGTCCGACAACAACCCGGACAACGACTTCGAGGTGAGCCTGCCCGACAAGGAGCTGTACGTCAGATGGTTGCAACTGTCCACCTTCCTCCCCGTCATACGTTTCACCCATCTGCCGAGCAAATACTCGGACGATTCCG ] [+] EMBL BI507554 [ CCCGTTCATCATGCCGGGCGCGGTCGGCGGGGACGTGGCCCTCCCCATGTCCGACAACAACCCGGACAACGACTTCGAGGTGAGCCTGCCCGACAAGGAGCTGTACGTCAGATGGTTGCAACTGTCCACCTTCCTCCCCGTCATACGTTTCACCCATCTGCCGAGCAAATACTCGGACGATTCCGTGCTCGAGATAGCGAAGAGGTTGACGAGCCTCAGACAGAAAACGGTCACTCCTCTTCTCAAGAAATACGCGAACGAGACCCTGGACACCGGCCTGCCCATCATACGACCTTTGTGGATGCTAGACCCGACCGATCCCGCTTGCCTGGTTGTCTACGACGAGTTTTCCGTGGGGGAGGAGCTGATCGTCGCCCCCATCCTTCACTCCGGGAGCAGGCAGAGGGAGATCTACTTGCCTGCCGGCGTTTGGAGGGACGGGATCGACGGTAGCCTGAGGAAGGGCTCCAGATGGATCCACAATTACAGGGTTGCCGAGGACAAGGTCGCGTATTTCGTCAAGATACCTGACAACACGAGATTTTAATT] consensusID : consensus_786#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 497 fasta sequence [GCTCTACGTTTCCATCAGGGCGAACAGGACCAATCACTTTTGCCTCGAGGCCAAACACGACGCGTTCGCCTACATCAATTACCTAACCCCTTATCCCCAATTGAACTACACCATATGCGCCGGGGACAACATGAAGAATTTGCACTCGTCGATGGCCGAGAAGTCGTTGTGGGACGGCCTCAAGCCGGACGAGCTGTCCGCCGTCCACTCTCTCCTCACCGAGCCTGTATGGCAGATATCCCCCACCAGCGAGCCGGCCGTTTACAACTACACCGAGGACGTGATCGCTCTGCCGTTCCTGCGCCAAGGCCACGTGTTGCTCAGCGAGGAGTGGCAACCGAGCGCCGGCGACTTCGCCCTTGACGAGGAACGCTTCCCCTCCATGGAGGAGACTATCAATATCATTCACCGTAGGGGGTTCAGGATCGTGTTCACCGTGCAACCGTTCATATCCACCGAGTCGATCAACTTCAAGGACGCCGTGTCCAACAGACTGT] [+] EMBL BI507656 [GCTCTACGTTTCCATCAGGGCGAACAGGACCAATCACTTTTGCCTCGAGGCCAAACACGACGCGTTCGCCTACATCAATTACCTAACCCCTTATCCCCAATTGAACTACACCATATGCGCCGGGGACAACATGAAGAATTTGCACTCGTCGATGGCCGAGAAGTCGTTGTGGGACGGCCTCAAGCCGGACGAGCTGTCCGCCGTCCACTCTCTCCTCACCGAGCCTGTATGGCAGATATCCCCCACCAGCGAGCCGGCCGTTTACAACTACACCGAGGACGTGATCGCTCTGCCGTTCCTGCGCCAAGGCCACGTGTTGCTCAGCGAGGAGTGGCAACCGAGCGCCGGCGACTTCGCCCTTGACGAGGAACGCTTCCCCTCCATGGAGGAGACTATCAATATCATTCACCGTAGGGGGTTCAGGATCGTGTTCACCGTGCAACCGTTCATATCCACCGAGTCGATCAACTTCAAGGACGCCGTGTCCAACAGACTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_786#0 ACCGAGTCGATCAACTTCAAGGACGCCGTGTCCAACAGACTGTTGATATCCGAGAGAGGC 60 consensus_786#1 ------------------------------------------------------------ consensus_786#0 AGCGACCCGAGAATACCCGCCCTCACCAGGTACAAGCAGAGTAACAGCATAGGCGTGCTC 120 consensus_786#1 ------------------------------------------------------------ consensus_786#0 GACATCACGAACAACAAAACTCTTCCCTGGCTGCAATCCAAGCTGGAAAGTTTGATCACC 180 consensus_786#1 -----------------------------------------GCTCTACGTTTCCATCAGG 19 *** * ** **** consensus_786#0 AAGTACCACGTGGACTCGTTCTACCTCGACCTGGGTACCGCCCAGGACATGCCCCACTAC 240 consensus_786#1 GCGAACAGGACCAATCACTTTTGCCTCGAG------GCCAAACACGACGCGTTCGCCTAC 73 * ** * ** * ****** ** ** *** * * **** consensus_786#0 TACAAATGCGGCCAGCCGTTGATCAACCCGGATCATTACAAAACCATGTTCAC-GAGGTC 299 consensus_786#1 ATCAATTAC--CTAACCCCTTATC--CCCAATTGA--ACTACACCATATGCGCCGGGGAC 127 *** * * * * ** * *** *** * * ** * ***** * * * * ** * consensus_786#0 GATATTGGGA-TCGGTTCCCGTGATCGGCGTCTCGGGGGCGATCTCCAGGCCTCGAGCCC 358 consensus_786#1 AACATGAAGAATTTGCACTCGTCGATGGCCGAGAAGTCGTTGTGGGACGGCCTCAAGCCG 187 * ** ** * * * *** *** * * * ****** **** consensus_786#0 CCGTCTTCGTCTCCCTTCCCCCGTTCTCCTCCTCGTGGAAGGCGATCAAGACCGTGATAC 418 consensus_786#1 GACGAGCTGTCCGCCGTCCACT-CTCTCCTCACCGAGCCTGTATGGCAGATATCCCCCAC 246 *** ** *** * ******* ** * * ** ** consensus_786#0 CGACGATTC--TCACCTACGGTATACTCGGTTACCCGTTCATCATGCCGGGCGCGGTCGN 476 consensus_786#1 CAGCGAGCCGGCCGTTTACAACTACACCGAGGACGTGATCGCTCTGCCGTTCCTGCGCCA 306 * *** * * *** ** ** * ** ***** * * * consensus_786#0 CGGGGACGTGGCCCTCCCC-ATGTCCGACAACAACCCGGACAACGACTTCGAGGTGAGCC 535 consensus_786#1 AGGCCACGTGTTGCTCAGCGAGGAGTGGCAACCGAGCGC-CGGCGACTTCG--------- 356 ** ***** *** * * * * **** ** * ******** consensus_786#0 TGCCCGACAAGGAGCTGTACGTCAG-ATGGTTGCAACTGTCCACCTTCCTCCCCGTCATA 594 consensus_786#1 CCCTTGACGAGGAACGCTTCCCCTCCATGGAGGAGACTATCAATATCATTCACCGTAGGG 416 * *** **** * * * * **** * *** ** * * ** **** consensus_786#0 CGTTTCA---CCCATCTGCCGAGCAAATACTCGGACGATTCCGTGCTCGAGATAGCGAAG 651 consensus_786#1 GGTTCAGGATCGTGTTCACCGTGCAACCGTTCATATC-CACCGAG-TCGAT-CAACTTCA 473 *** * * *** **** ** * *** * **** * * consensus_786#0 AGGTTGACGAGCCTCAGACAGAAAACGGTCACTCCTCTTCTCAAGAAATACGCGAACGAG 711 consensus_786#1 AGGACGCCGTGTCC--AACAGACTGT---------------------------------- 497 *** * ** * * ***** consensus_786#0 ACCCTGGACACCGGCCTGCCCATCATACGACCTTTGTGGATGCTAGACCCGACCGATCCC 771 consensus_786#1 ------------------------------------------------------------ consensus_786#0 GCTTGCCTGGTTGTCTACGACGAGTTTTCCGTGGGGGAGGAGCTGATCGTCGCCCCCATC 831 consensus_786#1 ------------------------------------------------------------ consensus_786#0 CTTCACTCCGGGAGCAGGCAGAGGGAGATCTACTTGCCTGCCGGCGTTTGGAGGGACGGG 891 consensus_786#1 ------------------------------------------------------------ consensus_786#0 ATCGACGGTAGCCTGAGGAAGGGCTCCAGATGGATCCACAATTACAGGGTTGCCGAGGAC 951 consensus_786#1 ------------------------------------------------------------ consensus_786#0 AAGGTCGCGTATTTCGTCAAGATACCTGACAACACGAGATTTTAATT 998 consensus_786#1 ----------------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |