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Apis mellifera
cluster # 786 cluster # 786       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_786#0 length = 998 sequences # 2  
consensus_786#1 length = 497 sequences # 1  

consensusID : consensus_786#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 998
fasta sequence
                              [ACCGAGTCGATCAACTTCAAGGACGCCGTGTCCAACAGACTGTTGATATCCGAGAGAGGCAGCGACCCGAGAATACCCGCCCTCACCAGGTACAAGCAGAGTAACAGCATAGGCGTGCTCGACATCACGAACAACAAAACTCTTCCCTGGCTGCAATCCAAGCTGGAAAGTTTGATCACCAAGTACCACGTGGACTCGTTCTACCTCGACCTGGGTACCGCCCAGGACATGCCCCACTACTACAAATGCGGCCAGCCGTTGATCAACCCGGATCATTACAAAACCATGTTCACGAGGTCGATATTGGGATCGGTTCCCGTGATCGGCGTCTCGGGGGCGATCTCCAGGCCTCGAGCCCCCGTCTTCGTCTCCCTTCCCCCGTTCTCCTCCTCGTGGAAGGCGATCAAGACCGTGATACCGACGATTCTCACCTACGGTATACTCGGTTACCCGTTCATCATGCCGGGCGCGGTCGNCGGGGACGTGGCCCTCCCCATGTCCGACAACAACCCGGACAACGACTTCGAGGTGAGCCTGCCCGACAAGGAGCTGTACGTCAGATGGTTGCAACTGTCCACCTTCCTCCCCGTCATACGTTTCACCCATCTGCCGAGCAAATACTCGGACGATTCCGTGCTCGAGATAGCGAAGAGGTTGACGAGCCTCAGACAGAAAACGGTCACTCCTCTTCTCAAGAAATACGCGAACGAGACCCTGGACACCGGCCTGCCCATCATACGACCTTTGTGGATGCTAGACCCGACCGATCCCGCTTGCCTGGTTGTCTACGACGAGTTTTCCGTGGGGGAGGAGCTGATCGTCGCCCCCATCCTTCACTCCGGGAGCAGGCAGAGGGAGATCTACTTGCCTGCCGGCGTTTGGAGGGACGGGATCGACGGTAGCCTGAGGAAGGGCTCCAGATGGATCCACAATTACAGGGTTGCCGAGGACAAGGTCGCGTATTTCGTCAAGATACCTGACAACACGAGATTTTAATT]

[+] EMBL BI503977             [ACCGAGTCGATCAACTTCAAGGACGCCGTGTCCAACAGACTGTTGATATCCGAGAGAGGCAGCGACCCGAGAATACCCGCCCTCACCAGGTACAAGCAGAGTAACAGCATAGGCGTGCTCGACATCACGAACAACAAAACTCTTCCCTGGCTGCAATCCAAGCTGGAAAGTTTGATCACCAAGTACCACGTGGACTCGTTCTACCTCGACCTGGGTACCGCCCAGGACATGCCCCACTACTACAAATGCGGCCAGCCGTTGATCAACCCGGATCATTACAAAACCATGTTCACGAGGTCGATATTGGGATCGGTTCCCGTGATCGGCGTCTCGGGGGCGATCTCCAGGCCTCGAGCCCCCGTCTTCGTCTCCCTTCCCCCGTTCTCCTCCTCGTGGAAGGCGATCAAGACCGTGATACCGACGATTCTCACCTACGGTATACTCGGTTACCCGTTCATCATGCCGGGCGCGGTCGNCGGGGACGTGGCCCTCCCCATGTCCGACAACAACCCGGACAACGACTTCGAGGTGAGCCTGCCCGACAAGGAGCTGTACGTCAGATGGTTGCAACTGTCCACCTTCCTCCCCGTCATACGTTTCACCCATCTGCCGAGCAAATACTCGGACGATTCCG                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BI507554             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CCCGTTCATCATGCCGGGCGCGGTCGGCGGGGACGTGGCCCTCCCCATGTCCGACAACAACCCGGACAACGACTTCGAGGTGAGCCTGCCCGACAAGGAGCTGTACGTCAGATGGTTGCAACTGTCCACCTTCCTCCCCGTCATACGTTTCACCCATCTGCCGAGCAAATACTCGGACGATTCCGTGCTCGAGATAGCGAAGAGGTTGACGAGCCTCAGACAGAAAACGGTCACTCCTCTTCTCAAGAAATACGCGAACGAGACCCTGGACACCGGCCTGCCCATCATACGACCTTTGTGGATGCTAGACCCGACCGATCCCGCTTGCCTGGTTGTCTACGACGAGTTTTCCGTGGGGGAGGAGCTGATCGTCGCCCCCATCCTTCACTCCGGGAGCAGGCAGAGGGAGATCTACTTGCCTGCCGGCGTTTGGAGGGACGGGATCGACGGTAGCCTGAGGAAGGGCTCCAGATGGATCCACAATTACAGGGTTGCCGAGGACAAGGTCGCGTATTTCGTCAAGATACCTGACAACACGAGATTTTAATT]


>consensus_786#0 ACCGAGTCGATCAACTTCAAGGACGCCGTGTCCAACAGACTGTTGATATCCGAGAGAGGC AGCGACCCGAGAATACCCGCCCTCACCAGGTACAAGCAGAGTAACAGCATAGGCGTGCTC GACATCACGAACAACAAAACTCTTCCCTGGCTGCAATCCAAGCTGGAAAGTTTGATCACC AAGTACCACGTGGACTCGTTCTACCTCGACCTGGGTACCGCCCAGGACATGCCCCACTAC TACAAATGCGGCCAGCCGTTGATCAACCCGGATCATTACAAAACCATGTTCACGAGGTCG ATATTGGGATCGGTTCCCGTGATCGGCGTCTCGGGGGCGATCTCCAGGCCTCGAGCCCCC GTCTTCGTCTCCCTTCCCCCGTTCTCCTCCTCGTGGAAGGCGATCAAGACCGTGATACCG ACGATTCTCACCTACGGTATACTCGGTTACCCGTTCATCATGCCGGGCGCGGTCGNCGGG GACGTGGCCCTCCCCATGTCCGACAACAACCCGGACAACGACTTCGAGGTGAGCCTGCCC GACAAGGAGCTGTACGTCAGATGGTTGCAACTGTCCACCTTCCTCCCCGTCATACGTTTC ACCCATCTGCCGAGCAAATACTCGGACGATTCCGTGCTCGAGATAGCGAAGAGGTTGACG AGCCTCAGACAGAAAACGGTCACTCCTCTTCTCAAGAAATACGCGAACGAGACCCTGGAC ACCGGCCTGCCCATCATACGACCTTTGTGGATGCTAGACCCGACCGATCCCGCTTGCCTG GTTGTCTACGACGAGTTTTCCGTGGGGGAGGAGCTGATCGTCGCCCCCATCCTTCACTCC GGGAGCAGGCAGAGGGAGATCTACTTGCCTGCCGGCGTTTGGAGGGACGGGATCGACGGT AGCCTGAGGAAGGGCTCCAGATGGATCCACAATTACAGGGTTGCCGAGGACAAGGTCGCG TATTTCGTCAAGATACCTGACAACACGAGATTTTAATT



consensusID : consensus_786#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 497
fasta sequence
                              [GCTCTACGTTTCCATCAGGGCGAACAGGACCAATCACTTTTGCCTCGAGGCCAAACACGACGCGTTCGCCTACATCAATTACCTAACCCCTTATCCCCAATTGAACTACACCATATGCGCCGGGGACAACATGAAGAATTTGCACTCGTCGATGGCCGAGAAGTCGTTGTGGGACGGCCTCAAGCCGGACGAGCTGTCCGCCGTCCACTCTCTCCTCACCGAGCCTGTATGGCAGATATCCCCCACCAGCGAGCCGGCCGTTTACAACTACACCGAGGACGTGATCGCTCTGCCGTTCCTGCGCCAAGGCCACGTGTTGCTCAGCGAGGAGTGGCAACCGAGCGCCGGCGACTTCGCCCTTGACGAGGAACGCTTCCCCTCCATGGAGGAGACTATCAATATCATTCACCGTAGGGGGTTCAGGATCGTGTTCACCGTGCAACCGTTCATATCCACCGAGTCGATCAACTTCAAGGACGCCGTGTCCAACAGACTGT]

[+] EMBL BI507656             [GCTCTACGTTTCCATCAGGGCGAACAGGACCAATCACTTTTGCCTCGAGGCCAAACACGACGCGTTCGCCTACATCAATTACCTAACCCCTTATCCCCAATTGAACTACACCATATGCGCCGGGGACAACATGAAGAATTTGCACTCGTCGATGGCCGAGAAGTCGTTGTGGGACGGCCTCAAGCCGGACGAGCTGTCCGCCGTCCACTCTCTCCTCACCGAGCCTGTATGGCAGATATCCCCCACCAGCGAGCCGGCCGTTTACAACTACACCGAGGACGTGATCGCTCTGCCGTTCCTGCGCCAAGGCCACGTGTTGCTCAGCGAGGAGTGGCAACCGAGCGCCGGCGACTTCGCCCTTGACGAGGAACGCTTCCCCTCCATGGAGGAGACTATCAATATCATTCACCGTAGGGGGTTCAGGATCGTGTTCACCGTGCAACCGTTCATATCCACCGAGTCGATCAACTTCAAGGACGCCGTGTCCAACAGACTGT]


>consensus_786#1 GCTCTACGTTTCCATCAGGGCGAACAGGACCAATCACTTTTGCCTCGAGGCCAAACACGA CGCGTTCGCCTACATCAATTACCTAACCCCTTATCCCCAATTGAACTACACCATATGCGC CGGGGACAACATGAAGAATTTGCACTCGTCGATGGCCGAGAAGTCGTTGTGGGACGGCCT CAAGCCGGACGAGCTGTCCGCCGTCCACTCTCTCCTCACCGAGCCTGTATGGCAGATATC CCCCACCAGCGAGCCGGCCGTTTACAACTACACCGAGGACGTGATCGCTCTGCCGTTCCT GCGCCAAGGCCACGTGTTGCTCAGCGAGGAGTGGCAACCGAGCGCCGGCGACTTCGCCCT TGACGAGGAACGCTTCCCCTCCATGGAGGAGACTATCAATATCATTCACCGTAGGGGGTT CAGGATCGTGTTCACCGTGCAACCGTTCATATCCACCGAGTCGATCAACTTCAAGGACGC CGTGTCCAACAGACTGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_786#0      ACCGAGTCGATCAACTTCAAGGACGCCGTGTCCAACAGACTGTTGATATCCGAGAGAGGC 60
consensus_786#1      ------------------------------------------------------------
                                                                                 

consensus_786#0      AGCGACCCGAGAATACCCGCCCTCACCAGGTACAAGCAGAGTAACAGCATAGGCGTGCTC 120
consensus_786#1      ------------------------------------------------------------
                                                                                 

consensus_786#0      GACATCACGAACAACAAAACTCTTCCCTGGCTGCAATCCAAGCTGGAAAGTTTGATCACC 180
consensus_786#1      -----------------------------------------GCTCTACGTTTCCATCAGG 19
                                                              ***  *   **  ****  

consensus_786#0      AAGTACCACGTGGACTCGTTCTACCTCGACCTGGGTACCGCCCAGGACATGCCCCACTAC 240
consensus_786#1      GCGAACAGGACCAATCACTTTTGCCTCGAG------GCCAAACACGACGCGTTCGCCTAC 73
                       * **       *    ** * ******        **   ** ***  *  *  ****

consensus_786#0      TACAAATGCGGCCAGCCGTTGATCAACCCGGATCATTACAAAACCATGTTCAC-GAGGTC 299
consensus_786#1      ATCAATTAC--CTAACCCCTTATC--CCCAATTGA--ACTACACCATATGCGCCGGGGAC 127
                       *** * *  * * **  * ***  ***   * *  ** * ***** * * * * ** *

consensus_786#0      GATATTGGGA-TCGGTTCCCGTGATCGGCGTCTCGGGGGCGATCTCCAGGCCTCGAGCCC 358
consensus_786#1      AACATGAAGAATTTGCACTCGTCGATGGCCGAGAAGTCGTTGTGGGACGGCCTCAAGCCG 187
                      * **   ** *  *  * ***    ***      *  *   *     ****** **** 

consensus_786#0      CCGTCTTCGTCTCCCTTCCCCCGTTCTCCTCCTCGTGGAAGGCGATCAAGACCGTGATAC 418
consensus_786#1      GACGAGCTGTCCGCCGTCCACT-CTCTCCTCACCGAGCCTGTATGGCAGATATCCCCCAC 246
                             ***  ** *** *   *******  ** *   *     **          **

consensus_786#0      CGACGATTC--TCACCTACGGTATACTCGGTTACCCGTTCATCATGCCGGGCGCGGTCGN 476
consensus_786#1      CAGCGAGCCGGCCGTTTACAACTACACCGAGGACGTGATCGCTCTGCCGTTCCTGCGCCA 306
                     *  ***  *   *   ***        **   **  * **    *****  *  *  *  

consensus_786#0      CGGGGACGTGGCCCTCCCC-ATGTCCGACAACAACCCGGACAACGACTTCGAGGTGAGCC 535
consensus_786#1      AGGCCACGTGTTGCTCAGCGAGGAGTGGCAACCGAGCGC-CGGCGACTTCG--------- 356
                      **  *****   ***  * * *   * ****    **  *  ********         

consensus_786#0      TGCCCGACAAGGAGCTGTACGTCAG-ATGGTTGCAACTGTCCACCTTCCTCCCCGTCATA 594
consensus_786#1      CCCTTGACGAGGAACGCTTCCCCTCCATGGAGGAGACTATCAATATCATTCACCGTAGGG 416
                       *  *** **** *  * *  *   ****  *  *** ** *  *   ** ****    

consensus_786#0      CGTTTCA---CCCATCTGCCGAGCAAATACTCGGACGATTCCGTGCTCGAGATAGCGAAG 651
consensus_786#1      GGTTCAGGATCGTGTTCACCGTGCAACCGTTCATATC-CACCGAG-TCGAT-CAACTTCA 473
                      ***      *   *   *** ****    **  *     *** * ****   * *    

consensus_786#0      AGGTTGACGAGCCTCAGACAGAAAACGGTCACTCCTCTTCTCAAGAAATACGCGAACGAG 711
consensus_786#1      AGGACGCCGTGTCC--AACAGACTGT---------------------------------- 497
                     ***  * ** * *    *****                                      

consensus_786#0      ACCCTGGACACCGGCCTGCCCATCATACGACCTTTGTGGATGCTAGACCCGACCGATCCC 771
consensus_786#1      ------------------------------------------------------------
                                                                                 

consensus_786#0      GCTTGCCTGGTTGTCTACGACGAGTTTTCCGTGGGGGAGGAGCTGATCGTCGCCCCCATC 831
consensus_786#1      ------------------------------------------------------------
                                                                                 

consensus_786#0      CTTCACTCCGGGAGCAGGCAGAGGGAGATCTACTTGCCTGCCGGCGTTTGGAGGGACGGG 891
consensus_786#1      ------------------------------------------------------------
                                                                                 

consensus_786#0      ATCGACGGTAGCCTGAGGAAGGGCTCCAGATGGATCCACAATTACAGGGTTGCCGAGGAC 951
consensus_786#1      ------------------------------------------------------------
                                                                                 

consensus_786#0      AAGGTCGCGTATTTCGTCAAGATACCTGACAACACGAGATTTTAATT 998
consensus_786#1      -----------------------------------------------
                                                                    




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)