These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_788#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 506 fasta sequence [AAGCACCTCGAGCACCTACTCCAGCAACTCCTGCTGCTTCGCTTGCTGAAATTCAAAGACTTGAACGAGAAAAAAAAGCGGAAGAACAACGATTTCAACAAATAATGCAGCAACAATTAGCACAGCAGAAAGCCATAGAAGCAGCGCAAGAAGCATCGGTAACTGATTCTTCTAAAAGATTACAATTTAAGTGGGCAGAAAAAAGTACGAGTTCTACTAAATCTATACCAGTAAAAAGTCTCGCTCAAATTCAACAAGAAGAGCAGGAACGGATCGCCAAGGTAAAGCAACAAGAAAGGGAACGTCAAGAAAAGGCAGGACAAAAAGAATCAACGAACGTACTGCAAAATGCTGGAATATNNNGGTACTGCATCTCAATGTTTGAATTGGGCTAATTCGAGTAGCTCTAATAATAGTCAACCTTGGTCGAACAATAGTGGTAGTAGTGGTTTTTGGGATGATCCTACGCCAATCAAATCTTCTACAACCGCGAAATCTATTAAACA] [+] EMBL BI505171 [AAGCACCTCGAGCACCTACTCCAGCAACTCCTGCTGCTTCGCTTGCTGAAATTCAAAGACTTGAACGAGAAAAAAAAGCGGAAGAACAACGATTTCAACAAATAATGCAGCAACAATTAGCACAGCAGAAAGCCATAGAAGCAGCGCAAGAAGCATCGGTAACTGATTCTTCTAAAAGATTACAATTTAAGTGGGCAGAAAAAAGTACGAGTTCTACTAAATCTATACCAGTAAAAAGTCTCGCTCAAATTCAACAAGAAGAGCAGGAACGGATCGCCAAGGTAAAGCAACAAGAAAGGGAACGTCAAGAAAAGGCAGGACAAAAAGAATCAACGAACGTACTGCAAAATGCTGGAATAT GGGGTACTGCATCTCAATGTTTGAATTGGGCTAATTCGAGTAGCTCTAATAATAGTCAACCTTGGTCGAACAATAGTGGTAGTAGTGGTTTTTGGGATGATCCTACGCCAATCAAATCTTCTACAACCGCGAAATCTATTAAACA] [+] EMBL BI503967 [AAGCACCTCGAGCACCTACTCCAGCAACTCCTGCTGCTTCGCTTGCTGAAATTCAAAGACTTGAACGAGAAAAAAAAGCGGAAGAACAACGATTTCAACAAATAATGCAGCAACAATTAGCACTGCAGAAAGCCATAGAAGCAGCGCAAGAAGCATCGGTAACTGATTCTTCTAAAAGATTACAATTTAAGTGGGCAGAAAAAAGTACGAGTTCTACTAAATCTATACCAGTAAAAAGTCTCGCTCAAATTCAACAAGAAGAGCAGGAACGGATCGCCAAGGTAAAGCAACAAGAAAGGGAACGTCAAGAAAAGGCAGGACAAAAAGAATCAACGAACGTACTGCAAAATGCTGGAATATNNNGGTACTGCATCTCAATGTTTGAATTGGGCTAATTCGAGTAGCTCTAATAATAGTCAACCTTGGTCGAACAATAGTGGTAGTAGTGGTTTTTGGGATGATCCTACGCCAATC ] consensusID : consensus_788#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 487 fasta sequence [TTCGCAGATTACAAGAACGAAGTAAAGCACCATGGGCGCAAGCACCTCGAGCACCTACTCCAGCAACTCCTGCTGCTTCGCTTGCTGAAATTCAAAGACTTGAACGAGAAAAAAAAGCGGAAGAACAACGATTTCAACAAATAATGCAGCAACAATTAGCACAGCAGAAAGCCATAGAAGCAGCGCAAGAAGCATCGGTAACTGATTCTTCTAAAAGATTACAATTTAAGTGCAGAAAAAAGTACGAGTTCTACTAAATCTATACCAGTAAAAAGTCTCGCTCAAATTCAACAAGAAGAGCAGGAACGGATCGCCAAGGTAAAGGTACTTATTACTTTGTCAATATTTTATTATCATATGTTAATTTTGATATTTCTTATTATTTCGAGATCTTTTTATTTTTGAAATTTTATATATTCATATAATAGCGGAACAGAAAGAATTGTAATTGTTAAAAGATAATTATATATTGCTAATTGTTATTGCT] [+] EMBL BI510306 [TTCGCAGATTACAAGAACGAAGTAAAGCACCATGGGCGCAAGCACCTCGAGCACCTACTCCAGCAACTCCTGCTGCTTCGCTTGCTGAAATTCAAAGACTTGAACGAGAAAAAAAAGCGGAAGAACAACGATTTCAACAAATAATGCAGCAACAATTAGCACAGCAGAAAGCCATAGAAGCAGCGCAAGAAGCATCGGTAACTGATTCTTCTAAAAGATTACAATTTAAGTGCAGAAAAAAGTACGAGTTCTACTAAATCTATACCAGTAAAAAGTCTCGCTCAAATTCAACAAGAAGAGCAGGAACGGATCGCCAAGGTAAAGGTACTTATTACTTTGTCAATATTTTATTATCATATGTTAATTTTGATATTTCTTATTATTTCGAGATCTTTTTATTTTTGAAATTTTATATATTCATATAATAGCGGAACAGAAAGAATTGTAATTGTTAAAAGATAATTATATATTGCTAATTGTTATTGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_788#0 ---------------------------------------AAGCACCTCGAGCACCTACTC 21 consensus_788#1 TTCGCAGATTACAAGAACGAAGTAAAGCACCATGGGCGCAAGCACCTCGAGCACCTACTC 60 ********************* consensus_788#0 CAGCAACTCCTGCTGCTTCGCTTGCTGAAATTCAAAGACTTGAACGAGAAAAAAAAGCGG 81 consensus_788#1 CAGCAACTCCTGCTGCTTCGCTTGCTGAAATTCAAAGACTTGAACGAGAAAAAAAAGCGG 120 ************************************************************ consensus_788#0 AAGAACAACGATTTCAACAAATAATGCAGCAACAATTAGCACAGCAGAAAGCCATAGAAG 141 consensus_788#1 AAGAACAACGATTTCAACAAATAATGCAGCAACAATTAGCACAGCAGAAAGCCATAGAAG 180 ************************************************************ consensus_788#0 CAGCGCAAGAAGCATCGGTAACTGATTCTTCTAAAAGATTACAATTTAAGTGGGCAGAAA 201 consensus_788#1 CAGCGCAAGAAGCATCGGTAACTGATTCTTCTAAAAGATTACAATTTAAGTG--CAGAAA 238 **************************************************** ****** consensus_788#0 AAAGTACGAGTTCTACTAAATCTATACCAGTAAAAAGTCTCGCTCAAATTCAACAAGAAG 261 consensus_788#1 AAAGTACGAGTTCTACTAAATCTATACCAGTAAAAAGTCTCGCTCAAATTCAACAAGAAG 298 ************************************************************ consensus_788#0 AGCAGGAACGGATCGCCAAGGTAAAGCAACAAGAAAGGGAACGTCAAGAAAAGGCAGGAC 321 consensus_788#1 AGCAGGAACGGATCGCCAAGGTAAAGGTACTTATTACTT--TGTCAATATTTTAT----T 352 ************************** ** * ***** * consensus_788#0 AAAAAGAATCAACGAACGTACTGCAAAATGCTGGAATATNNNGGTACTGCATCTCAATGT 381 consensus_788#1 ATCATATGTTAATTTTGATATTTCTTATTATTTCGAGATCTTTTTATTTT-TGAAATTTT 411 * * * ** ** * * * * * * ** ** * * * * * consensus_788#0 TTGAATTGGGCTAATTCGAGTAGCTCTAATAATAGTCAACCTTGGTCGAACAATAGTGGT 441 consensus_788#1 ATATATTCATATAATA-GCGGAACAGAAAGAATTGTAA----TTGTTAAAAGATAATTAT 466 * *** **** * * * * ** *** ** * * ** ** *** * * consensus_788#0 AGTAGTGGTTTTTGGGATGATCCTACGCCAATCAAATCTTCTACAACCGCGAAATCTATT 501 consensus_788#1 A-TATTGCTAATTGTTATTGCT-------------------------------------- 487 * ** ** * *** ** consensus_788#0 AAACA 506 consensus_788#1 ----- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |