These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_799#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 620 fasta sequence [TCTTGACTTCAAGATTTACCGGACATAATTGATTGAGTAGGAAATAGTCTTTGGCTATTATCTGAAAAAGCGATTTGAAAAATATACGTGAGTGCTGATGTGGGTTTTATCCGAAATGATTTCATTGGGAAAAAGTTGCAAACGTGCGAAAGGTATAAATGAGTCGAGCGGCGAACGCGTGCTGAGATCGCGTCAGCACGACCGCGGAACCAGCCAGGAAAGGCGTTACAAGCGGAGCCATCGCCGATCGCCGAGCAGCGGCCGACAACACGGTGGTCATCGTGATCGCGATCGTGATCGTCTGGCGCATCCCACTTGCTCTAGACGTGCAAGGATCTACCGTCATCATGCCTCGTCGTCGACCAGCCAGGACCGGCATAGGCATCGCTCGCCATCCTCAAGAAGTCAGAGCCCACGACCGCCCTCCGTCGAGGACGACGAAGACGGACACCTTGTTTACCAATCCGGCGACATCCTGGCAAATAGATATAAAGTACTGGCCACCCTAGGAGAGGGTACTTTTGGAAAAGTTGTCAAGGTTAAGGACTTGCAAATGGATCACGTGATGGCGCTGAAAATCATCAAGAACGTAGAGAAGTATAGGGAAGCCGCGAAGCTTC] [+] EMBL BI946415 [TCTTGACTTCAAGATTTACCGGACATAATTGATTGAGTAGGAAATAGTCTTTGGCTATTATCTGAAAAAGCGATTTGAAAAATATACGTGAGTGCTGATGTGGGTTTTATCCGAAATGATTTCATTGGGAAAAAGTTGCAAACGTGCGAAAGGTATAAATGAGTCGAGCGGCGAACGCGTGCTGAGATCGCGTCAGCACGACCGCGGAACCAGCCAGGAAAGGCGTTACAAGCGGAGCCATCGCCGATCGCCGAGCAGCGGCCGACAACACGGTGGTCATCGTGATCGCGATCGTGATCGTCTGGCGCATTCCACTTGCTCTAGACGTGCAAGGATCTACCGTCATCATGCCTCGTCGTCGACCAGCCAGGACCGGCATAGGCATCGCTCGCCATCCTCAAGAAGTCAGAGCCCACGACCGCCCTCCGTCGAGGACGACGAATACGGACACCTTGTTTACCAATTCGGCGACATTCTGGCAAATAGATATAAAGTACTGGCCACCCTAGGAGAGGGTACTTTTGGAAAAGTTGTCAAGGTTAAAGACTTGCAAATGGATCACGTGATGGCGCTGAAAATCATCAAGAACGTAGAGAAGTTTAGGGAAGCCGCGAAGCTTC] [+] EMBL BI503895 [ GAAAAAGTTGCAAACGTGCGAAAGGTATAAATGAGTCGAGCGGCGAACGCGTGCTGAGATCGCGTCAGCACGACCGCGGAACCAGCCAGGAAAGGCGTTACAAGCGGAGCCATCGCCGATCGCCGAGCAGCGGCCGACAACACGGTGGTCATCGTGATCGCGATCGTGATCGTCTGGCGCATCCCACTTCCTCTAGACGTGCAAGGATCTACCGTCATCATGCCTCGTCGTCGACCAGCCAGGACCGGCATAGGCATCGCTCGCCATCCTCAAGAAGTCAGAGCCCACGACCGCCCTCCGTCGAGGACGACGAAGACGGCCACCTTGTTTACCAATCCGGCGACATCCTGGCAAATAGATATAAAGTACTGGCCACCCTAGGAGAGGGTACTTTTGGAAAAGTTGTCAAGGTTAAGGACTTGCAAATGGATCACGTGATGGCGCTGAAAATCATCAAGAACGTAGAGAAGTATAGGGAAGCCGCGAAGCT ] consensusID : consensus_799#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 503 fasta sequence [GTCTTTGGCTATTATCTGAAAAAGCGATTTGAAAAATATACGTGAGTGCTGATGTGGGTTTTATCCGAAATGATTTCATTGGGAAAAAGTTGCAAACGTGCGAAAGCGGCGAACGCGTGCTGAGATCGCGTCAGCACGACCGCGGAACCAGCCAGGAAAGGCGTTACAAGCGGAGCCATCGCCGATCGCCGAGCAGCGGCCGACAACACGGTGGTCATCGTGATCGCGATCGTGATCGTCTGGCGCATCCCACTTCCTCTAGACGTGCAAGGATCTACCGTCATCATGCCTCGTCGTCGACCAGCCAGGACCGGCATAGGCATCGCTCGCCATCCTCAAGAAGTCAGATAAAGTACTGGCCACCCTAGGAGAGGGTACTTTTGGAAAAGTTGTCAAGGTTAAGGACTTGCAAATGGATCACGTGATGGCGCTGAAAATCATCAAGAACGTAGAGAAGTATAGGGAAGCCGCGAAGCTCGAAATAAACGCCTTAGAGAAAATTG] [+] EMBL BI504086 [GTCTTTGGCTATTATCTGAAAAAGCGATTTGAAAAATATACGTGAGTGCTGATGTGGGTTTTATCCGAAATGATTTCATTGGGAAAAAGTTGCAAACGTGCGAAAGCGGCGAACGCGTGCTGAGATCGCGTCAGCACGACCGCGGAACCAGCCAGGAAAGGCGTTACAAGCGGAGCCATCGCCGATCGCCGAGCAGCGGCCGACAACACGGTGGTCATCGTGATCGCGATCGTGATCGTCTGGCGCATCCCACTTCCTCTAGACGTGCAAGGATCTACCGTCATCATGCCTCGTCGTCGACCAGCCAGGACCGGCATAGGCATCGCTCGCCATCCTCAAGAAGTCAGATAAAGTACTGGCCACCCTAGGAGAGGGTACTTTTGGAAAAGTTGTCAAGGTTAAGGACTTGCAAATGGATCACGTGATGGCGCTGAAAATCATCAAGAACGTAGAGAAGTATAGGGAAGCCGCGAAGCTCGAAATAAACGCCTTAGAGAAAATTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_799#0 TCTTGACTTCAAGATTTACCGGACATAATTGATTGAGTAGGAAATAGTCTTTGGCTATTA 60 consensus_799#1 ----------------------------------------------GTCTTTGGCTATTA 14 ************** consensus_799#0 TCTGAAAAAGCGATTTGAAAAATATACGTGAGTGCTGATGTGGGTTTTATCCGAAATGAT 120 consensus_799#1 TCTGAAAAAGCGATTTGAAAAATATACGTGAGTGCTGATGTGGGTTTTATCCGAAATGAT 74 ************************************************************ consensus_799#0 TTCATTGGGAAAAAGTTGCAAACGTGCGAAAGGTATAAATGAGTCGAGCGGCGAACGCGT 180 consensus_799#1 TTCATTGGGAAAAAGTTGCAAACGTGCGAAAG----------------CGGCGAACGCGT 118 ******************************** ************ consensus_799#0 GCTGAGATCGCGTCAGCACGACCGCGGAACCAGCCAGGAAAGGCGTTACAAGCGGAGCCA 240 consensus_799#1 GCTGAGATCGCGTCAGCACGACCGCGGAACCAGCCAGGAAAGGCGTTACAAGCGGAGCCA 178 ************************************************************ consensus_799#0 TCGCCGATCGCCGAGCAGCGGCCGACAACACGGTGGTCATCGTGATCGCGATCGTGATCG 300 consensus_799#1 TCGCCGATCGCCGAGCAGCGGCCGACAACACGGTGGTCATCGTGATCGCGATCGTGATCG 238 ************************************************************ consensus_799#0 TCTGGCGCATCCCACTTGCTCTAGACGTGCAAGGATCTACCGTCATCATGCCTCGTCGTC 360 consensus_799#1 TCTGGCGCATCCCACTTCCTCTAGACGTGCAAGGATCTACCGTCATCATGCCTCGTCGTC 298 ***************** ****************************************** consensus_799#0 GACCAGCCAGGACCGGCATAGGCATCGCTCGCCATCCTCAAGAAGTCAGAGCCCACGACC 420 consensus_799#1 GACCAGCCAGGACCGGCATAGGCATCGCTCGCCATCCTCAAGAAGTCAGA---------- 348 ************************************************** consensus_799#0 GCCCTCCGTCGAGGACGACGAAGACGGACACCTTGTTTACCAATCCGGCGACATCCTGGC 480 consensus_799#1 ------------------------------------------------------------ consensus_799#0 AAATAGATATAAAGTACTGGCCACCCTAGGAGAGGGTACTTTTGGAAAAGTTGTCAAGGT 540 consensus_799#1 ---------TAAAGTACTGGCCACCCTAGGAGAGGGTACTTTTGGAAAAGTTGTCAAGGT 399 *************************************************** consensus_799#0 TAAGGACTTGCAAATGGATCACGTGATGGCGCTGAAAATCATCAAGAACGTAGAGAAGTA 600 consensus_799#1 TAAGGACTTGCAAATGGATCACGTGATGGCGCTGAAAATCATCAAGAACGTAGAGAAGTA 459 ************************************************************ consensus_799#0 TAGGGAAGCCGCGAAGCTTC------------------------ 620 consensus_799#1 TAGGGAAGCCGCGAAGCTCGAAATAAACGCCTTAGAGAAAATTG 503 ****************** |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |