|
These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_801#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 615 fasta sequence
[ACAGAGATACAAGAGGGGTTCAAGTACAAACACATCCTAATGTGGATAAAGAATTATTCAGAACACGTGGTCAGATAGGCTTAAAAATTCCTACAAAACCATTTCCATTAAATACTGATGTTGGAGTATTAAAATGGCGATTGCAAGCTCAAGATGAGACAGCATTACCTATTTCAATTAATTGTTGGCCATCTGAAAATGGAGAAGGTGGATGTGATGTGAATATAGAATATGAATTAGAACAGATTAATCTAGAATTAAATGATGTTCAAATAAATATTCCATTACCTATGGGATGTAATCCTATAGTAAGCGAATGCGATGGACAATATACACATGAAGCACGACGAAATACACTTGTATGGTCTTTACCAGTGGTTGATGCAACAACGAAGTCAGGTTCAATGGAATTCTCAGCACCTTCTTCTACTCCTGCAGATTTTTTCCCTCTTCTTGTTTCATTTTCATCTAAGACATCATATGTCAATATTAAAGTAACTGAAGTCTTACTTGTAGAAGATGAAAGTCCTGTTAAATATTCAGTGGAGACAGTTTTCTTTACTGATAATTATGAAGTGGTATAAAATATATCTATTATATAATAAGATAATTGCT]
[+] EMBL BI513322 [ACAGAGATACAAGAGGGGTTCAAGTACAAACACATCCTAATGTGGATAAAGAATTATTCAGAACACGTGGTCAGATAGGCTTAAAAATTCCTACAAAACCATTTCCATTAAATACTGATGTTGGAGTATTAAAATGGCGATTGCAAGCTCAAGATGAGACAGCATTACCTATTTCAATTAATTGTTGGCCATCTGAAAATGGAGAAGGTGGATGTGATGTGAATATAGAATATGAATTAGAACAGATTAATCTAGAATTAAATGATGTTCAAATAAATATTCCATTACCTATGGGATGTAATCCTATAGTAAGCGAATGCGATGGACAATATACACATGAAGCACGACGAAATACACTTGTATGGTCTTTACCAGTGGTTGATGCAACAACGAAGTCAGGTTCAATGGAATTCTCAGCACCTTCTTCTACTCCTGCAGATTTTTTCCCTCTTCTTGTTTCATTTTCATCTAAGACATCATATGTCAATATTAAAGTAACTGAAGTCTTACTTGTAGAAGATGAAAGTCCTGTTAAATATTCAGTGGAGACAGTTTTCTTTACTGATAATTATGAAGTGGTATAAAATATATCTATTATATAATAAGATAATTGCT]
consensusID : consensus_801#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 466 fasta sequence
[CTTCATCCCTCCCGCCGTGAAAGCTAAAAGAAACGCCGTGAATTTCTCGTACAACGTAGGAAGAGGAAAGCTCGATTATCCTTCTCTTTTCTTTCCCTTTTCTTTTTTTTTCTCCCTTTTTTTGACTTTATCCCCCGCTTCGTTATCGTTTTCGTTCAACCTTCTTTCGGAGACTCTGATTTCGGTGACTCTGTCGCCTCCTCCTTGATACTTGAAATTTTTTCCCTGTTCCGTTTTTATTTTCATCTAAGACATCATATGTCAATATTAAAGTAACTGAAGTCTTACTTGTAGAAGATGAAAGTCCTGTTAAATATTCAGTGGAGACAGTTTTCTTTACTGATAATTATGAAGTGNNATAAAATATATCTATTATATAATAAGATAATTGCTCGTGCTAAGTATGTACAAAAATACAAAACTAGCACTGTCCATTGGAATTTCAAAGATAAAGATTTTCAGCTTA]
[+] EMBL BI514119 [CTTCATCCCTCCCGCCGTGAAAGCTAAAAGAAACGCCGTGAATTTCTCGTACAACGTAGGAAGAGGAAAGCTCGATTATCCTTCTCTTTTCTTTCCCTTTTCTTTTTTTTTCTCCCTTTTTTTGACTTTATCCCCCGCTTCGTTATCGTTTTCGTTCAACCTTCTTTCGGAGACTCTGATTTCGGTGACTCTGTCGCCTCCTCCTTGATACTTGAAATTTTTTCCCTGTTCCGTTTTTATTTTCATCTAAGACATCATATGTCAATATTAAAGTAACTGAAGTCTTACTTGTAGAAGATGAAAGTCCTGTTAAATATTCAGTGGAGACAGTTTTCTTTACTGATAATTATGAAGTGGTATAAAATATATCTATTATATAATAAGATAATTGCTCGTGCTAAGTATGTACAAAAATACAAAACTAGCACTGTCCATTGGAATTTCAAAGATAAAGATTTTCAGCTTA]
[+] EMBL BI514023 [CTTCATCCCTCCCGCCGTGAAAGCTAAAAGAAACGCCGTGAATTTCTCGTACAACGTAGGAAGAGGAAAGCTCGATTATCCTTCTCTTTTCTTTCCCTTTTCTTTTTTTTTCTCCCTTTTTTTGACTTTATCCCCCGCTTCGTTATCGTTTTCGTTCAACCTTCTTTCGGAGACTCTGATTTCGGTGACTCTGTCGCCTCCTCCTTGATACTTGAAATTTTTTCCCTGTTCCGTTTTTATTTTCATCTAAGACATCATATGTCAATATTAAAGTAACTGAAGTCTTACTTGTAGAAGATGAAAGTCCTGTTAAATATTCAGTGGAGACAGTTTTCTTTACTGATAATTATGAAGTGNNATAAAATATATCTATTATATAATAAGATAATTGCTCGTGCTAAGTATGTACAAAAATACAAAACTAGCACTGTCCATTGGA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_801#0 ACAGAGATACAAGAGGGGTTCAAGTACAAACACATCCTAATGTGGATAAAGAATTATTCA 60
consensus_801#1 ------------------------------------------------------------
consensus_801#0 GAACACGTGGTCAGATAGGCTTAAAAATTCCTACAAAACCATTTCCATTAAATACTGATG 120
consensus_801#1 ------------------------------------------------------------
consensus_801#0 TTGGAGTATTAAAATGGCGATTGCAAGCTCAAGATGAGACAGCATTACCTATTTCAATTA 180
consensus_801#1 --------------------------------------------------------CTTC 4
**
consensus_801#0 ATTGTTGGCCATCTGAAAATGGAGAAGGTGGATGTGATGTGAATATAGAATATGAATTAG 240
consensus_801#1 ATCCCTCCCGCCGTGAAAGCTAAAA-----GAAACGCCGTGAATTTCTCGTACAACGTAG 59
** * * ***** * * ** * ****** * ** * ***
consensus_801#0 AACAGATTAATCTAGAATTAAATGATGTTCAAATAAATATTCCATTACCTATGGGATGTA 300
consensus_801#1 GA-AGAGGAA-----AGCTCGATTATCCTTCTCTTTTCTTTCCCTTTTCTTTTT--TTTT 111
* *** ** * * ** ** * * **** ** ** * * *
consensus_801#0 ATCCTATAGTAAGCGAATGCGATGGACAATATACACATGAAGCACGACGAAATACACTTG 360
consensus_801#1 CTCCCTTTTT------------TTGACTTTATCCCC----------------CGCTTCGT 143
*** * * * *** *** * * *
consensus_801#0 TATGGTCTTTACCAGTGGTTGATGCAACAACGAAGTCAGGTTCAATGGAATTCTCAGCAC 420
consensus_801#1 TATCGTTTTCGTTCAACCTTCTTTCGGAGAC----TCTGATTTCGGTGACTCTGTCGCCT 199
*** ** ** ** * * ** ** * ** ** * **
consensus_801#0 CTTCTTCTACTCCTGCAGATTTTTTCCCTCTTCTTGTTTCATTTTCATCTAAGACATCAT 480
consensus_801#1 CCTCCTTGATACTTG-AAATTTTTTCCCTGTTCCGTTTTTATTTTCATCTAAGACATCAT 258
* ** * * * ** * *********** *** *** ********************
consensus_801#0 ATGTCAATATTAAAGTAACTGAAGTCTTACTTGTAGAAGATGAAAGTCCTGTTAAATATT 540
consensus_801#1 ATGTCAATATTAAAGTAACTGAAGTCTTACTTGTAGAAGATGAAAGTCCTGTTAAATATT 318
************************************************************
consensus_801#0 CAGTGGAGACAGTTTTCTTTACTGATAATTATGAAGTGGTATAAAATATATCTATTATAT 600
consensus_801#1 CAGTGGAGACAGTTTTCTTTACTGATAATTATGAAGTGNNATAAAATATATCTATTATAT 378
************************************** ********************
consensus_801#0 AATAAGATAATTGCT--------------------------------------------- 615
consensus_801#1 AATAAGATAATTGCTCGTGCTAAGTATGTACAAAAATACAAAACTAGCACTGTCCATTGG 438
***************
consensus_801#0 ----------------------------
consensus_801#1 AATTTCAAAGATAAAGATTTTCAGCTTA 466
|
|||||||
| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |