These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_802#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 725 fasta sequence [TTTAAATGTATATTAGAAGGTAATTCAACCAACTCCAGAACTTTCTCCATGCACAAGCGAAGCAGGTCTTTATGCAAAAAACGTGATGATCACAGGGATTAACGGTAAAAGAGCACCATTGGCTTCTATGGGCAGTGTTGATCCTCCAGAAGCAGATTCGAGGTCTCTTGGTTCCGACTCGGTCTTCCTAAGAAACGATGAACAAGAAGAGTGTCTCGACACAGAGGATGAAGTGTCTGGATTTTCGACCGATTCTGAAACAGCCGGGCCAAGTTGTCGACGGTTTCTTCGAGTACCCTCGAAAAAGAAGAAAACAATTGAAAAATGGGATGGTTGTGCTGGATGTGTTCCTAGACGGCGATCTGGAGGCAAACTTTGTCAAGCTTGTCATAGTATTAGTGCAGCTGTTGAAACCTCTAGGTCTCAGACAGTTTCTACGAGCACCAGCAGTCAGACTAGTCTCGGTTCTCCTCCGTGTTCACCAACTATCGAACTCAGACATAGACCACCACCGACACCATTGCCATCAAGTCCACCTATTTGGTCTCAAGAAACGCTCTTTTAATTCTCTAAAAACTTGCCGTTTTCATAAATGATTAGTAACCGCACAAATATATTCCTTTCATAAGAAAAACGAACAAAGAAAATGAAGAACAACTGTAAAAAATAATTGATAAAATAATTTTGACTATATTAAATGAAATTACAAAAACAAAAAATACAAA] [+] EMBL BI516427 [TTTAAATGTATATTAGAAGGTAATTCAACCAACTCCAGAACTTTCTCCATGCACAAGCGAAGCAGGTCTTTATGCAAAAAACGTGATGATCACAGGGATTAACGGTAAAAGAGCACCATTGGCTTCTATGGGCAGTGTTGATCCTCCAGAAGCAGATTCGAGGTCTCTTGGTTCCGACTCGGTCTTCCTAAGAAACGATGAACAAGAAGAGTGTCTCGACACAGAGGATGAAGTGTCTGGATTTTCGACCGATTCTGAAACAGCCGGGCCAAGTTGTCGACGGTTTCTTCGAGTACCCTCGAAAAAGAAGAAAACAATTGAAAAATGGGATGGTTGTGCTGGATGTGTTCCTAGACGGCGATCTGGAGGCAAACTTTGTCAAGCTTGTCATAGTATTAGTG ] [+] EMBL BI516070 [ TTTTCGACCGATTCTGAAACAGCCGGGCCAAGTTGTCGACGGTTTCTTCGAGTACCCTCGAAAAAGAAGAAAACAATTGAAAAATGGGATGGTTGTGCTGGATGTGTTCCTAGACGGCGATCTGGAGGCAAACTTTGTCAAGCTTGTCATAGTATTAGTGCAGCTGTTGAAACCTCTAGGTCTCAGACAGTTTCTACGAGCACCAGCAGTCAGACTAGTCTCGGTTCTCCTCCGTGTTCACCAACTATCGAACTCAGACATAGACCACCACCGACACCATTGCCATCAAGTCCACCTATTTGGTCTCAAGAAACGCTCTTTTAATTCTCTAAAAACTTGCCGTTTTCATAAATGATTAGTAACCGCACAAATATATTCCTTTCATAAGAAAAACGAACAAAGAAAATGAAGAACAACTGTAAAAAATAATTGATAAAATAATTTTGACTATATTAAATGAAATTACAAAAACAAAAAATACAAA] consensusID : consensus_802#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 531 fasta sequence [CAGTACCATGTTTGCCGCTTCATTCTACGTTTTCAACTAAATACACTATCCATGATGAACTCTGGGATCTTTATTATCCCATTGATATTCAAGTAATTCAACCAACTCCAGAACTTTCTCCATGCACAAGCGAAGCAGGTCTTTATGCAAAAAACGTGATGATCACAGGGATTAACGGTAAAAGAGCACCATTGGCTTCTATGGGCAGTGTTGATCCTCCAGAAGCAGATTCGAGGTTATCGATATATTTATATAGAATACATATTATATTTATATAGAATACATAATTTTGAATAAAATTTTAAAAGATCTGGTTGGTCGATAATTTTGGAAAAATAGTAGAGAAGAAAAGATTCAAATATAAAATTTTCGATTTAACTAATTATTATTTTCCAAGATATTAATAAAATTCATATATTATTATCTATCTAGATATTATTAATATAAATTAATCTTTGCTATAAAAATAACGTCATCGATTGTCGAATAACCATTGATATTATTATATGTTAAAAAGTATCCTAAAAATAT] [+] EMBL BI513308 [CAGTACCATGTTTGCCGCTTCATTCTACGTTTTCAACTAAATACACTATCCATGATGAACTCTGGGATCTTTATTATCCCATTGATATTCAAGTAATTCAACCAACTCCAGAACTTTCTCCATGCACAAGCGAAGCAGGTCTTTATGCAAAAAACGTGATGATCACAGGGATTAACGGTAAAAGAGCACCATTGGCTTCTATGGGCAGTGTTGATCCTCCAGAAGCAGATTCGAGGTTATCGATATATTTATATAGAATACATATTATATTTATATAGAATACATAATTTTGAATAAAATTTTAAAAGATCTGGTTGGTCGATAATTTTGGAAAAATAGTAGAGAAGAAAAGATTCAAATATAAAATTTTCGATTTAACTAATTATTATTTTCCAAGATATTAATAAAATTCATATATTATTATCTATCTAGATATTATTAATATAAATTAATCTTTGCTATAAAAATAACGTCATCGATTGTCGAATAACCATTGATATTATTATATGTTAAAAAGTATCCTAAAAATAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_802#0 ------------------------------------------------------------ consensus_802#1 CAGTACCATGTTTGCCGCTTCATTCTACGTTTTCAACTAAATACACTATCCATGATGAAC 60 consensus_802#0 ---------------TTTAAATGTATATTAGAAGGTAATTCAACCAACTCCAGAACTTTC 45 consensus_802#1 TCTGGGATCTTTATTATCCCATTGATATT--CAAGTAATTCAACCAACTCCAGAACTTTC 118 * ** ***** * ************************** consensus_802#0 TCCATGCACAAGCGAAGCAGGTCTTTATGCAAAAAACGTGATGATCACAGGGATTAACGG 105 consensus_802#1 TCCATGCACAAGCGAAGCAGGTCTTTATGCAAAAAACGTGATGATCACAGGGATTAACGG 178 ************************************************************ consensus_802#0 TAAAAGAGCACCATTGGCTTCTATGGGCAGTGTTGATCCTCCAGAAGCAGATTCGAGGTC 165 consensus_802#1 TAAAAGAGCACCATTGGCTTCTATGGGCAGTGTTGATCCTCCAGAAGCAGATTCGAGGT- 237 *********************************************************** consensus_802#0 TCTTGGTTCCGACTCGGTCTTCCTAAGAAACGATGAACAAGAAGAGTGTCTCGACACAGA 225 consensus_802#1 ------TATCGATATA-TTTATATAGAATAC-----------ATATTATATTTATATAGA 279 * *** * * ** * ** * * * * * * * *** consensus_802#0 GGATGAAGTGTCTGGATTTTCGACCGATTCTGAAACAGCCGGGCCAAGTTGTCGACGGTT 285 consensus_802#1 ATACATA--------ATTTTGAATAAAATTTTAAAAGATCTGGTTG----GTCGATAATT 327 * * ***** * * * * *** * ** ***** ** consensus_802#0 TCTTCGAGTACCCTCGAAAAAGAAGAAAACAATTGAAAAATGGGATGGTTG--TGCTGGA 343 consensus_802#1 T-TGGAAAAATAGTAGAGAAGAAAAGATTCAAATATAAAATTTTCGATTTAACTAATTAT 386 * * * * * ** ** ** * *** * ***** ** * * consensus_802#0 TGTGTTCCTAGACGGCGATCTGGAGGCAAACTTTGTCAAGCTTGTCATAGTATTAGTGCA 403 consensus_802#1 TATTTTCCAAGATATTAATA-AAATTCATATATTATTA--TCTATCTAGATATTATTAAT 443 * * **** *** ** * ** * ** * * * ** ***** * consensus_802#0 GCTGTTGAAACCTCTAGGTCTCAGACAGTTTCTACGAGCACCAGCAGTCAGACTAGTCTC 463 consensus_802#1 ATAAATTAA---TCTTTGCTATAAAAA-----TAACGTCATCGATTGTCGAATAACCATT 495 * ** *** * * * * ** ** * *** * * * consensus_802#0 GGTTCTCCTCCGTGTTCACCAACTATCGAACTCAGACATAGACCACCACCGACACCATTG 523 consensus_802#1 GATATTATTATATGTTAAAAAGTATCCTAA---AAATAT--------------------- 531 * * * * **** * * * ** * * ** consensus_802#0 CCATCAAGTCCACCTATTTGGTCTCAAGAAACGCTCTTTTAATTCTCTAAAAACTTGCCG 583 consensus_802#1 ------------------------------------------------------------ consensus_802#0 TTTTCATAAATGATTAGTAACCGCACAAATATATTCCTTTCATAAGAAAAACGAACAAAG 643 consensus_802#1 ------------------------------------------------------------ consensus_802#0 AAAATGAAGAACAACTGTAAAAAATAATTGATAAAATAATTTTGACTATATTAAATGAAA 703 consensus_802#1 ------------------------------------------------------------ consensus_802#0 TTACAAAAACAAAAAATACAAA 725 consensus_802#1 ---------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |